ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet52c08 |
|---|---|
| Clone Library Name | barley_pub |
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 232 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 232 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 235 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 234 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 234 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 234 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 74.3 bits (181), Expect = 7e-14 Identities = 33/33 (100%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK Sbjct: 92 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 73.6 bits (179), Expect = 1e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADH+ADPVNNNAWAFATNFVPGK Sbjct: 235 VTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 73.6 bits (179), Expect = 1e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADH+ADPVNNNAWAFATNFVPGK Sbjct: 235 VTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 73.6 bits (179), Expect = 1e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENLADHLADPVNNNAWAFATNFVPGK Sbjct: 235 VTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 73.6 bits (179), Expect = 1e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENLADHLADPVNNNAWAFATNFVPGK Sbjct: 235 VTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 73.2 bits (178), Expect = 2e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 235 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 73.2 bits (178), Expect = 2e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 235 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 73.2 bits (178), Expect = 2e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 174 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 73.2 bits (178), Expect = 2e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 229 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 73.2 bits (178), Expect = 2e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 73.2 bits (178), Expect = 2e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 73.2 bits (178), Expect = 2e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 233 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 73.2 bits (178), Expect = 2e-13 Identities = 32/33 (96%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 223 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 72.4 bits (176), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 246 VTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 72.4 bits (176), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 246 VTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 72.4 bits (176), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK Sbjct: 233 VTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 72.4 bits (176), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK Sbjct: 242 VTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 72.0 bits (175), Expect = 3e-13 Identities = 32/33 (96%), Positives = 32/33 (96%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW FATNFVPGK Sbjct: 235 VTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 235 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 235 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 235 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 84 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 234 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 234 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 196 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 72.0 bits (175), Expect = 3e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAW++ATNFVPGK Sbjct: 237 VTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 71.6 bits (174), Expect = 5e-13 Identities = 31/33 (93%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLA+PVNNNAWA+ATNFVPGK Sbjct: 213 VTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 70.9 bits (172), Expect = 8e-13 Identities = 30/33 (90%), Positives = 32/33 (96%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENLADHL DPVNNNAWA+ATNFVPGK Sbjct: 232 VTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 70.9 bits (172), Expect = 8e-13 Identities = 30/33 (90%), Positives = 33/33 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHL+DPVNNNAW++ATNFVPGK Sbjct: 236 VTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 70.5 bits (171), Expect = 1e-12 Identities = 30/33 (90%), Positives = 32/33 (96%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPL+NL DHLADPVNNNAWA+ATNFVPGK Sbjct: 235 VTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 70.5 bits (171), Expect = 1e-12 Identities = 31/33 (93%), Positives = 32/33 (96%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLA PVNNNAWA+ATNFVPGK Sbjct: 231 VTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 70.5 bits (171), Expect = 1e-12 Identities = 30/32 (93%), Positives = 32/32 (100%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 223 VTGKGPLENLADH+ADPVNNNAWA+ATNFVPG Sbjct: 230 VTGKGPLENLADHIADPVNNNAWAYATNFVPG 261
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 69.7 bits (169), Expect = 2e-12 Identities = 30/33 (90%), Positives = 32/33 (96%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENLADH+ADPV NNAWAFATNFVPGK Sbjct: 232 VTGKGPIENLADHIADPVANNAWAFATNFVPGK 264
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 67.4 bits (163), Expect = 9e-12 Identities = 28/33 (84%), Positives = 32/33 (96%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL+DH+ADPV NNAWA+ATNFVPGK Sbjct: 205 VTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 67.4 bits (163), Expect = 9e-12 Identities = 29/33 (87%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLE+LADH+ADPVNNNAW ATNFVPGK Sbjct: 234 VTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 67.4 bits (163), Expect = 9e-12 Identities = 29/33 (87%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHL DPVNNNAW++ATNFVP K Sbjct: 235 VTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 67.0 bits (162), Expect = 1e-11 Identities = 29/33 (87%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL DHLADPV NNAWA+ATNFVPGK Sbjct: 234 VTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 67.0 bits (162), Expect = 1e-11 Identities = 29/33 (87%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL DHLADPV NNAWA+ATNFVPGK Sbjct: 118 VTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 67.0 bits (162), Expect = 1e-11 Identities = 29/33 (87%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL DH+ADPV NNAWAFATNFVPGK Sbjct: 233 VTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 67.0 bits (162), Expect = 1e-11 Identities = 29/33 (87%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL DHLADPV NNAWA+ATNFVPGK Sbjct: 233 VTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 66.6 bits (161), Expect = 1e-11 Identities = 29/33 (87%), Positives = 30/33 (90%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGPLENLADHLADPVNNNAWA+AT PGK Sbjct: 224 VTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 65.9 bits (159), Expect = 3e-11 Identities = 28/33 (84%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 231 VTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 65.9 bits (159), Expect = 3e-11 Identities = 28/33 (84%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK Sbjct: 233 VTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 65.1 bits (157), Expect = 4e-11 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL+DH+ DPV NNAWA+ATNFVPGK Sbjct: 233 VTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 64.7 bits (156), Expect = 6e-11 Identities = 27/33 (81%), Positives = 30/33 (90%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP+ENL+DHLADP NNAWA+ATNF PGK Sbjct: 233 VTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 64.3 bits (155), Expect = 7e-11 Identities = 27/33 (81%), Positives = 31/33 (93%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 220 VTGKGP++NL DH+ADPV NNAWAFATNFVPG+ Sbjct: 233 VTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 59.3 bits (142), Expect = 2e-09 Identities = 26/32 (81%), Positives = 26/32 (81%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 223 VTGKGPLENL DHL DPV NNAW FAT F PG Sbjct: 236 VTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 58.2 bits (139), Expect = 5e-09 Identities = 25/32 (78%), Positives = 27/32 (84%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 223 VTGKGPLENL DHL +PV NNAW +AT FVPG Sbjct: 233 VTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 55.8 bits (133), Expect = 3e-08 Identities = 25/32 (78%), Positives = 26/32 (81%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 223 VTGKGPLENL DHLADPV NNAWA+A PG Sbjct: 236 VTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 53.1 bits (126), Expect = 2e-07 Identities = 22/31 (70%), Positives = 26/31 (83%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVP 226 VTGKGP+ENL DHLA+P NNA+A+AT F P Sbjct: 242 VTGKGPIENLTDHLANPAENNAFAYATKFTP 272
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 52.4 bits (124), Expect = 3e-07 Identities = 23/31 (74%), Positives = 26/31 (83%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVP 226 VTGKGP++NLADHLADP NNA+A AT F P Sbjct: 224 VTGKGPIQNLADHLADPGTNNAFAAATKFTP 254
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 50.8 bits (120), Expect = 8e-07 Identities = 22/31 (70%), Positives = 26/31 (83%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVP 226 VTGKGP++NL DHLA+P NNA+AFAT F P Sbjct: 221 VTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 50.4 bits (119), Expect = 1e-06 Identities = 22/32 (68%), Positives = 25/32 (78%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 223 VTGKGP++NL DHLADP N A+A AT F PG Sbjct: 221 VTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast| precursor (LHCII type I CAB-AB10) (LHCP) Length = 268 Score = 42.0 bits (97), Expect = 4e-04 Identities = 21/32 (65%), Positives = 23/32 (71%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNNAWAFATNFVPG 223 V+ K LENLADHL VNNNA + TNFVPG Sbjct: 236 VSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/21 (80%), Positives = 18/21 (85%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNN 256 VTG GP +NL DHLADPVNNN Sbjct: 245 VTGVGPYQNLLDHLADPVNNN 265
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 37.4 bits (85), Expect = 0.010 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNN 256 VTG+GP+ENLA HL+DP NN Sbjct: 245 VTGEGPVENLAKHLSDPFGNN 265
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 35.0 bits (79), Expect = 0.047 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = -3 Query: 312 GKGPLENLADHLADPVNNN 256 G GPLENLA HLADP +NN Sbjct: 215 GTGPLENLATHLADPWHNN 233
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 34.3 bits (77), Expect = 0.081 Identities = 14/20 (70%), Positives = 16/20 (80%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNN 259 VTGKGP ENL HL+DP +N Sbjct: 225 VTGKGPFENLLQHLSDPWHN 244
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -3 Query: 318 VTGKGPLENLADHLADP-VNNNAWAFATNFVP 226 VTG+GP+EN HL DP +N A T F P Sbjct: 90 VTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 30.8 bits (68), Expect = 0.89 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 315 TGKGPLENLADHLADPVN 262 TGKGPL N A HL+DP++ Sbjct: 263 TGKGPLNNWATHLSDPLH 280
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 30.8 bits (68), Expect = 0.89 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -3 Query: 315 TGKGPLENLADHLADPVN 262 TGKGPL N A HL+DP++ Sbjct: 260 TGKGPLNNWATHLSDPLH 277
>HUNB_DROTA (O46260) Protein hunchback (Fragments)| Length = 192 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 Query: 28 NLKNNQILHKHHLFSVHTPTHHLDSPSHAKS 120 N+K I H HH H +HH DS S+A S Sbjct: 9 NIKQEPISHHHHHHHAH-HSHHADSNSNASS 38
>HUNB_DRODA (O46262) Protein hunchback (Fragments)| Length = 195 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 28 NLKNNQILHKHHLFSVHTPTHHLDSPSHAKSISPER 135 N+K I H HH H H DS S++ + SP + Sbjct: 9 NIKQEPISHHHHHHHAHHSHHAHDSNSNSNASSPHQ 44
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor| [Contains: LH35 protein 1; LH35 protein 2] (Fragment) Length = 331 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -3 Query: 315 TGKGPLENLADHLADPVNNN 256 TG+ PL NLA H A+PV N Sbjct: 306 TGESPLANLAAHFANPVGAN 325
>HRP2_PLAFA (P05228) Histidine-rich protein precursor (Clone PFHRP-III)| Length = 241 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = +1 Query: 52 HKHHLFSVHTPTHHLDSPSHAKSISPERHAAQQHPSA 162 H HH+ H HH+ HA + HAA H +A Sbjct: 59 HAHHVADAHH-AHHVADAHHAHHAANAHHAANAHHAA 94
>OSKA_DROVI (Q24741) Maternal effect protein oskar| Length = 594 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = +3 Query: 93 SRLALTCKIYQSGKTCSTAASISNEVVGQARARALEVELTELT 221 +R+ L C+ + K + IS + + AR R VEL E+T Sbjct: 422 ARMELKCRFKKFEKVLQSGLCISGQTINAARQRLRLVELPEMT 464
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor| [Contains: LH38 protein 1; LH38 protein 2; LH38 protein 3] (Fragment) Length = 530 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 Query: 315 TGKGPLENLADHLADPVNNN 256 TG+ PL NL+ HLA+P+ N Sbjct: 335 TGESPLANLSAHLANPIGAN 354 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -3 Query: 318 VTGKGPLENLADHLADPVNNN 256 V G PL NLA+HL P+ N Sbjct: 146 VVGGSPLANLAEHLQQPLQRN 166
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -3 Query: 315 TGKGPLENLADHLADP 268 TG GP++NL HLADP Sbjct: 243 TGTGPIDNLFAHLADP 258
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -3 Query: 315 TGKGPLENLADHLADP 268 TG GP++NL HLADP Sbjct: 243 TGTGPIDNLFAHLADP 258
>HRP1_PLAFA (P05227) Histidine-rich protein precursor (Clone PFHRP-II)| Length = 332 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/37 (37%), Positives = 15/37 (40%) Frame = +1 Query: 52 HKHHLFSVHTPTHHLDSPSHAKSISPERHAAQQHPSA 162 H HH H HH HA S HAA H +A Sbjct: 143 HAHHAADAHH-AHHAAYAHHAHHASDAHHAADAHHAA 178
>CARA_BUCAP (Q8K9Z6) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 385 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +2 Query: 74 YTHQLIISTRPHMQNLSVR-KDMQHSSIH 157 Y+HQ++ T PH+ N+ D + S IH Sbjct: 52 YSHQIVTLTHPHIGNIGTNCNDEESSKIH 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.126 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,010,316 Number of Sequences: 219361 Number of extensions: 581050 Number of successful extensions: 1774 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 1705 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1771 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
