ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet52c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
2dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
3dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
4dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
5ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group... 80 5e-12
6ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA 80 5e-12
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
8dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
9dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 80 5e-12
10dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 5e-12
11dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 5e-12
12ref|XM_467879.1| Oryza sativa (japonica cultivar-group), mRNA 72 1e-09
13dbj|AK070419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
14ref|XM_467877.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
15ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
16dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
17dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
18ref|XM_483034.1| Oryza sativa (japonica cultivar-group), mRNA 60 5e-06
19dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
20dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic D... 60 5e-06
21dbj|AK073011.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
22gb|AF325723.1|AF325723 Pennisetum ciliare phosphate-induced prot... 52 0.001
23gb|AY105815.1| Zea mays PCO102946 mRNA sequence 52 0.001
24emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 42 1.1
25gb|AY230855.1| Xanthomonas sp. 35Y 70 kDa protein gene, complete... 42 1.1
26ref|XM_469111.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.2
27ref|NM_189865.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.2
28ref|XM_600477.2| PREDICTED: Bos taurus similar to Muscle-cadheri... 40 4.2
29gb|AY659306.1| Synthetic construct Peudomonas aeruginosa clone F... 40 4.2
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.2
31ref|XM_542202.2| PREDICTED: Canis familiaris similar to adenomat... 40 4.2
32emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 ... 40 4.2
33gb|AY907537.1| Uncultured bacterial symbiont of Discodermia diss... 40 4.2
34emb|AJ557546.1|MLI557546 Melittangium lichenicola melithiazol ge... 40 4.2
35emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in... 40 4.2
36gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, co... 40 4.2
37ref|XM_694557.1| PREDICTED: Danio rerio similar to neurochondrin... 40 4.2
38dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
40gb|AE004796.1| Pseudomonas aeruginosa PAO1, section 357 of 529 o... 40 4.2
41gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genom... 40 4.2
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.2
43dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
44dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 4.2
45dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.2
46emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in ... 40 4.2
47dbj|AK105700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
48dbj|AK062598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
49dbj|AK058704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  127 bits (64), Expect = 2e-26
 Identities = 112/128 (87%)
 Strand = Plus / Plus

                                                                           
Query: 192     tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
               ||||| ||||||||||||||||| ||| |||||||||| |||||||| || ||||| |||
Sbjct: 6191263 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 6191322

                                                                           
Query: 252     ctcccgtgcgcgccgtgggcgttgtagctcgctccggtggccccgtccaccagcagctgg 311
               |  |||||||||||||| ||||||||||| || |||||||||  |||||||||||||  |
Sbjct: 6191323 cggccgtgcgcgccgtgcgcgttgtagctggcgccggtggccttgtccaccagcagcgcg 6191382

                       
Query: 312     ccggcgta 319
               ||||||||
Sbjct: 6191383 ccggcgta 6191390



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 233     cgccggcagcaggtacttcc 252
               ||||||||||||||||||||
Sbjct: 6189005 cgccggcagcaggtacttcc 6189024
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>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0436F11
          Length = 165550

 Score =  127 bits (64), Expect = 2e-26
 Identities = 112/128 (87%)
 Strand = Plus / Plus

                                                                          
Query: 192    tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
              ||||| ||||||||||||||||| ||| |||||||||| |||||||| || ||||| |||
Sbjct: 105082 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 105141

                                                                          
Query: 252    ctcccgtgcgcgccgtgggcgttgtagctcgctccggtggccccgtccaccagcagctgg 311
              |  |||||||||||||| ||||||||||| || |||||||||  |||||||||||||  |
Sbjct: 105142 cggccgtgcgcgccgtgcgcgttgtagctggcgccggtggccttgtccaccagcagcgcg 105201

                      
Query: 312    ccggcgta 319
              ||||||||
Sbjct: 105202 ccggcgta 105209



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cgccggcagcaggtacttcc 252
              ||||||||||||||||||||
Sbjct: 102824 cgccggcagcaggtacttcc 102843
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>dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G10, full
           insert sequence
          Length = 962

 Score =  127 bits (64), Expect = 2e-26
 Identities = 112/128 (87%)
 Strand = Plus / Minus

                                                                       
Query: 192 tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
           ||||| ||||||||||||||||| ||| |||||||||| |||||||| || ||||| |||
Sbjct: 851 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 792

                                                                       
Query: 252 ctcccgtgcgcgccgtgggcgttgtagctcgctccggtggccccgtccaccagcagctgg 311
           |  |||||||||||||| ||||||||||| || |||||||||  |||||||||||||  |
Sbjct: 791 cggccgtgcgcgccgtgcgcgttgtagctggcgccggtggccttgtccaccagcagcgcg 732

                   
Query: 312 ccggcgta 319
           ||||||||
Sbjct: 731 ccggcgta 724
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>dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053E02, full
           insert sequence
          Length = 837

 Score =  121 bits (61), Expect = 1e-24
 Identities = 103/117 (88%)
 Strand = Plus / Plus

                                                                       
Query: 192 tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
           ||||| ||||||||||||||||| ||| |||||||||| |||||||| || ||||| |||
Sbjct: 40  tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 99

                                                                    
Query: 252 ctcccgtgcgcgccgtgggcgttgtagctcgctccggtggccccgtccaccagcagc 308
           |  |||||||||||||| ||||||||||| || |||||||||  |||||||||||||
Sbjct: 100 cggccgtgcgcgccgtgcgcgttgtagctggcgccggtggccttgtccaccagcagc 156
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>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2 mRNA
          Length = 1129

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                        
Query: 192  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 1033 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 974

                                                    
Query: 252  ctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
            |||| || |||||||| |||||||||||| ||||||||||
Sbjct: 973  ctcctgttcgcgccgttggcgttgtagctggctccggtgg 934
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>ref|XM_467873.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1127

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                        
Query: 192  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 1031 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 972

                                                    
Query: 252  ctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
            |||| || |||||||| |||||||||||| ||||||||||
Sbjct: 971  ctcctgttcgcgccgttggcgttgtagctggctccggtgg 932
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 85/100 (85%)
 Strand = Plus / Plus

                                                                            
Query: 192      tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
                ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 31842723 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 31842782

                                                        
Query: 252      ctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
                |||| || |||||||| |||||||||||| ||||||||||
Sbjct: 31842783 ctcctgttcgcgccgttggcgttgtagctggctccggtgg 31842822



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 90/108 (83%)
 Strand = Plus / Minus

                                                                            
Query: 201      gtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgc 260
                ||||||||||| || ||| ||||||| |  |||||||| | |||||| ||||||||||||
Sbjct: 31870943 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 31870884

                                                                
Query: 261      gcgccgtgggcgttgtagctcgctccggtggccccgtccaccagcagc 308
                || || |  ||||||||||| || ||| |||||  |||||||||||||
Sbjct: 31870883 gccccattcgcgttgtagctggccccgctggccgggtccaccagcagc 31870836



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                            
Query: 216      gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 275
                ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 31859226 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 31859285

                           
Query: 276      tagctcgctcc 286
                |||||||||||
Sbjct: 31859286 tagctcgctcc 31859296
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0471A11
          Length = 157740

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 85/100 (85%)
 Strand = Plus / Plus

                                                                        
Query: 192  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 3724 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 3783

                                                    
Query: 252  ctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
            |||| || |||||||| |||||||||||| ||||||||||
Sbjct: 3784 ctcctgttcgcgccgttggcgttgtagctggctccggtgg 3823



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 90/108 (83%)
 Strand = Plus / Minus

                                                                         
Query: 201   gtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgc 260
             ||||||||||| || ||| ||||||| |  |||||||| | |||||| ||||||||||||
Sbjct: 31944 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 31885

                                                             
Query: 261   gcgccgtgggcgttgtagctcgctccggtggccccgtccaccagcagc 308
             || || |  ||||||||||| || ||| |||||  |||||||||||||
Sbjct: 31884 gccccattcgcgttgtagctggccccgctggccgggtccaccagcagc 31837



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 216   gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 275
             ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 20227 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 20286

                        
Query: 276   tagctcgctcc 286
             |||||||||||
Sbjct: 20287 tagctcgctcc 20297
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>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0627E03
          Length = 159861

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 85/100 (85%)
 Strand = Plus / Plus

                                                                          
Query: 192    tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
              ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 138521 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 138580

                                                      
Query: 252    ctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
              |||| || |||||||| |||||||||||| ||||||||||
Sbjct: 138581 ctcctgttcgcgccgttggcgttgtagctggctccggtgg 138620



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                          
Query: 216    gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 275
              ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 155024 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 155083

                         
Query: 276    tagctcgctcc 286
              |||||||||||
Sbjct: 155084 tagctcgctcc 155094
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>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full
            insert sequence
          Length = 1128

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                        
Query: 192  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 1032 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 973

                                                    
Query: 252  ctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
            |||| || |||||||| |||||||||||| ||||||||||
Sbjct: 972  ctcctgttcgcgccgttggcgttgtagctggctccggtgg 933
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>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full
            insert sequence
          Length = 1127

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                        
Query: 192  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 251
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 1031 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 972

                                                    
Query: 252  ctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
            |||| || |||||||| |||||||||||| ||||||||||
Sbjct: 971  ctcctgttcgcgccgttggcgttgtagctggctccggtgg 932
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>ref|XM_467879.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 936

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 90/108 (83%)
 Strand = Plus / Minus

                                                                       
Query: 201 gtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgc 260
           ||||||||||| || ||| ||||||| |  |||||||| | |||||| ||||||||||||
Sbjct: 926 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 867

                                                           
Query: 261 gcgccgtgggcgttgtagctcgctccggtggccccgtccaccagcagc 308
           || || |  ||||||||||| || ||| |||||  |||||||||||||
Sbjct: 866 gccccattcgcgttgtagctggccccgctggccgggtccaccagcagc 819
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>dbj|AK070419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J22, full
           insert sequence
          Length = 1187

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 90/108 (83%)
 Strand = Plus / Minus

                                                                       
Query: 201 gtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgc 260
           ||||||||||| || ||| ||||||| |  |||||||| | |||||| ||||||||||||
Sbjct: 991 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 932

                                                           
Query: 261 gcgccgtgggcgttgtagctcgctccggtggccccgtccaccagcagc 308
           || || |  ||||||||||| || ||| |||||  |||||||||||||
Sbjct: 931 gccccattcgcgttgtagctggccccgctggccgggtccaccagcagc 884
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>ref|XM_467877.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1222

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 216  gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 275
            ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 1036 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 977

                       
Query: 276  tagctcgctcc 286
            |||||||||||
Sbjct: 976  tagctcgctcc 966
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>ref|XM_467872.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 245 gtacttcctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
           ||||||||||| || |||||||| |||||||||||| ||||||||||
Sbjct: 979 gtacttcctcctgttcgcgccgttggcgttgtagctggctccggtgg 933
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>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full
           insert sequence
          Length = 1110

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 245 gtacttcctcccgtgcgcgccgtgggcgttgtagctcgctccggtgg 291
           ||||||||||| || |||||||| |||||||||||| ||||||||||
Sbjct: 979 gtacttcctcctgttcgcgccgttggcgttgtagctggctccggtgg 933
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>dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C09, full
            insert sequence
          Length = 1222

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 216  gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 275
            ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 1036 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 977

                       
Query: 276  tagctcgctcc 286
            |||||||||||
Sbjct: 976  tagctcgctcc 966
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>ref|XM_483034.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 924

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 269 ggcgttgtagctcgctccggtggccccgtccaccagcagctggccggcgtaccc 322
           |||||||||||| || ||||||||  |||||||| |||||||||||| ||||||
Sbjct: 637 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccc 584
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                      
Query: 269      ggcgttgtagctcgctccggtggccccgtccaccagcagctggccggcgtaccc 322
                |||||||||||| || ||||||||  |||||||| |||||||||||| ||||||
Sbjct: 23962452 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccc 23962505
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>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0419H09
          Length = 143533

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 269   ggcgttgtagctcgctccggtggccccgtccaccagcagctggccggcgtaccc 322
             |||||||||||| || ||||||||  |||||||| |||||||||||| ||||||
Sbjct: 95603 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccc 95656
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>dbj|AK073011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145I01, full
           insert sequence
          Length = 922

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 269 ggcgttgtagctcgctccggtggccccgtccaccagcagctggccggcgtaccc 322
           |||||||||||| || ||||||||  |||||||| |||||||||||| ||||||
Sbjct: 635 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccc 582
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>gb|AF325723.1|AF325723 Pennisetum ciliare phosphate-induced protein 1-like protein mRNA,
           complete cds
          Length = 1160

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 231 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtagctcgctccggtg 290
           |||||||| | ||||||||||||||| || || |||| ||| ||| |||| || ||| ||
Sbjct: 989 agcgccgggaccaggtacttcctcccatgggccccgttggcattgaagctggccccgctg 930

                             
Query: 291 gccccgtccaccagcagc 308
           |||  |||||||||||||
Sbjct: 929 gcctggtccaccagcagc 912
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>gb|AY105815.1| Zea mays PCO102946 mRNA sequence
          Length = 1238

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 231 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtagctcgctccggtg 290
           |||||||| | |||||||||||||||||| || |||| ||| ||| |||| || ||| ||
Sbjct: 996 agcgccgggaccaggtacttcctcccgtgggccccgttggcattgaagctggccccgctg 937

                             
Query: 291 gccccgtccaccagcagc 308
           |||  ||| |||||||||
Sbjct: 936 gcctggtctaccagcagc 919
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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 8       acaaaggctgatttacatttt 28
               |||||||||||||||||||||
Sbjct: 1738417 acaaaggctgatttacatttt 1738437
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>gb|AY230855.1| Xanthomonas sp. 35Y 70 kDa protein gene, complete cds
          Length = 2037

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 224 gtcgaacagcgccggcagcag 244
           |||||||||||||||||||||
Sbjct: 837 gtcgaacagcgccggcagcag 817
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>ref|XM_469111.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 444

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 203 ggagcaggcggaggtggcggggtcgaacagcg 234
           ||||||||||||||||||| ||| || |||||
Sbjct: 51  ggagcaggcggaggtggcgaggtggagcagcg 20
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>ref|NM_189865.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 203 ggagcaggcggaggtggcgg 222
           ||||||||||||||||||||
Sbjct: 178 ggagcaggcggaggtggcgg 159
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>ref|XM_600477.2| PREDICTED: Bos taurus similar to Muscle-cadherin precursor
            (M-cadherin) (Cadherin-15) (Cadherin-14) (LOC522202),
            mRNA
          Length = 3264

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 285  ccggtggccccgtccaccagcagc 308
            |||||||||||||||||| |||||
Sbjct: 1805 ccggtggccccgtccacctgcagc 1782
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>gb|AY659306.1| Synthetic construct Peudomonas aeruginosa clone FLH038416.01F
           PA3773 gene, partial cds
          Length = 1158

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 225 tcgaacagcgccggcagcag 244
           ||||||||||||||||||||
Sbjct: 494 tcgaacagcgccggcagcag 475
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 203      ggagcaggcggaggtggcggggtcgaacagcg 234
                ||||||||||||||||||| ||| || |||||
Sbjct: 25514096 ggagcaggcggaggtggcgaggtggagcagcg 25514065
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>ref|XM_542202.2| PREDICTED: Canis familiaris similar to adenomatosis polyposis coli
           2 (LOC485084), mRNA
          Length = 7620

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 ccccgtccaccagcagctgg 311
           ||||||||||||||||||||
Sbjct: 460 ccccgtccaccagcagctgg 441
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>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13,
             complete sequence
          Length = 189908

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   aatacagtttggctagatgg 132
             ||||||||||||||||||||
Sbjct: 93966 aatacagtttggctagatgg 93947
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>gb|AY907537.1| Uncultured bacterial symbiont of Discodermia dissoluta polyketide
             synthesis gene cluster, partial sequence
          Length = 124311

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   ccagcgtggagcaggcggaggtgg 219
             |||||||||||| |||||||||||
Sbjct: 36765 ccagcgtggagccggcggaggtgg 36788
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>emb|AJ557546.1|MLI557546 Melittangium lichenicola melithiazol gene cluster
          Length = 51855

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   ggagcaggcggaggtggcgg 222
             ||||||||||||||||||||
Sbjct: 25240 ggagcaggcggaggtggcgg 25221
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>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
            complete sequence
          Length = 262038

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 15   ctgatttacattttttattt 34
            ||||||||||||||||||||
Sbjct: 5871 ctgatttacattttttattt 5852
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>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence
          Length = 113199

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tgatttacattttttattta 35
             ||||||||||||||||||||
Sbjct: 45849 tgatttacattttttattta 45868
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>ref|XM_694557.1| PREDICTED: Danio rerio similar to neurochondrin isoform 1
           (LOC571005), partial mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 229 acagcgccggcagcaggtac 248
           ||||||||||||||||||||
Sbjct: 814 acagcgccggcagcaggtac 795
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 203      ggagcaggcggaggtggcgg 222
                ||||||||||||||||||||
Sbjct: 25618798 ggagcaggcggaggtggcgg 25618779
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 203      ggagcaggcggaggtggcggggtcgaacagcg 234
                ||||||||||||||||||| ||| || |||||
Sbjct: 25605405 ggagcaggcggaggtggcgaggtggagcagcg 25605374
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>gb|AE004796.1| Pseudomonas aeruginosa PAO1, section 357 of 529 of the complete
            genome
          Length = 12098

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  tcgaacagcgccggcagcag 244
            ||||||||||||||||||||
Sbjct: 6016 tcgaacagcgccggcagcag 5997
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>gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genomic sequence, complete
             sequence
          Length = 117046

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 203   ggagcaggcggaggtggcggggtcgaacagcg 234
             ||||||||||||||||||| ||| || |||||
Sbjct: 20756 ggagcaggcggaggtggcgaggtggagcagcg 20787
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 226     cgaacagcgccggcagcagg 245
               ||||||||||||||||||||
Sbjct: 4550911 cgaacagcgccggcagcagg 4550892
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>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   ggagcaggcggaggtggcgg 222
             ||||||||||||||||||||
Sbjct: 72771 ggagcaggcggaggtggcgg 72752
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     tactactagttgtacccaat 115
              ||||||||||||||||||||
Sbjct: 150700 tactactagttgtacccaat 150681
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 209     ggcggaggtggcggggtcgaacag 232
               ||||| ||||||||||||||||||
Sbjct: 5337221 ggcggcggtggcggggtcgaacag 5337244
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>emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in linkage group 11,
             complete sequence
          Length = 234851

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    gatttacattttttatttag 36
             ||||||||||||||||||||
Sbjct: 21220 gatttacattttttatttag 21201
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>dbj|AK105700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D06, full
           insert sequence
          Length = 796

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 203 ggagcaggcggaggtggcggggtcgaacagcg 234
           ||||||||||||||||||| ||| || |||||
Sbjct: 142 ggagcaggcggaggtggcgaggtggagcagcg 111
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>dbj|AK062598.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F10, full
           insert sequence
          Length = 722

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 203 ggagcaggcggaggtggcggggtcgaacagcg 234
           ||||||||||||||||||| ||| || |||||
Sbjct: 68  ggagcaggcggaggtggcgaggtggagcagcg 37
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>dbj|AK058704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C08, full
           insert sequence
          Length = 1268

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 cgccggcagcaggtacttcc 252
           ||||||||||||||||||||
Sbjct: 976 cgccggcagcaggtacttcc 957


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,739,989
Number of Sequences: 3902068
Number of extensions: 2739989
Number of successful extensions: 59447
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59075
Number of HSP's gapped (non-prelim): 372
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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