ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet51f05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466144.1| Oryza sativa (japonica cultivar-group), mRNA Length = 853 Score = 65.9 bits (33), Expect = 6e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 206 ccaccagagctcctgaatgatggctggaagtctgcaggagc 246 |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 562 ccaccagaactcctgaatgatggctggaattctgcaggagc 522
>dbj|AK066564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073I17, full insert sequence Length = 853 Score = 65.9 bits (33), Expect = 6e-08 Identities = 39/41 (95%) Strand = Plus / Minus Query: 206 ccaccagagctcctgaatgatggctggaagtctgcaggagc 246 |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 562 ccaccagaactcctgaatgatggctggaattctgcaggagc 522
>emb|X87948.1|VURNAGRP V.unguiculata mRNA for glycin-rich protein Length = 1389 Score = 61.9 bits (31), Expect = 9e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 172 gccacctgcgccaccgccgcggccaaatccacctccacc 210 ||||||||| |||||||||| |||||||||||||||||| Sbjct: 1203 gccacctgctccaccgccgccgccaaatccacctccacc 1165
>ref|XM_472497.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 552 Score = 56.0 bits (28), Expect = 6e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 206 ccaccagagctcctgaatgatggctggaagtctgcaggagctcc 249 |||||||||||||| || ||||||||||| || ||||||||||| Sbjct: 482 ccaccagagctcctaaaggatggctggaactcagcaggagctcc 439
>dbj|AK102190.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087A06, full insert sequence Length = 902 Score = 56.0 bits (28), Expect = 6e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 206 ccaccagagctcctgaatgatggctggaagtctgcaggagctcc 249 |||||||||||||| || ||||||||||| || ||||||||||| Sbjct: 575 ccaccagagctcctaaaggatggctggaactcagcaggagctcc 532 Score = 44.1 bits (22), Expect = 0.21 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 89 aaaacatcacatccgaactacgaggaagttcactccat 126 ||||||||| |||| ||||||| ||||||||||||||| Sbjct: 673 aaaacatcatatccaaactacg-ggaagttcactccat 637
>gb|BT017535.1| Zea mays clone EL01N0422A10.c mRNA sequence Length = 568 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 215 ctcctgaatgatggctggaagtctgcaggagctcc 249 |||||||||||||||||||| || ||||||||||| Sbjct: 261 ctcctgaatgatggctggaactcagcaggagctcc 227
>gb|AY103548.1| Zea mays PCO091529 mRNA sequence Length = 1541 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 215 ctcctgaatgatggctggaagtctgcaggagctcc 249 |||||||||||||||||||| || ||||||||||| Sbjct: 719 ctcctgaatgatggctggaactcagcaggagctcc 685
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 9e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 217 cctgaatgatggctggaagtctgcaggagc 246 |||||||||||||||||| ||||||||||| Sbjct: 20670661 cctgaatgatggctggaattctgcaggagc 20670632
>dbj|AP004775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0451A10 Length = 137046 Score = 52.0 bits (26), Expect = 9e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 217 cctgaatgatggctggaagtctgcaggagc 246 |||||||||||||||||| ||||||||||| Sbjct: 21767 cctgaatgatggctggaattctgcaggagc 21738
>dbj|AP005469.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0040I22 Length = 134273 Score = 52.0 bits (26), Expect = 9e-04 Identities = 29/30 (96%) Strand = Plus / Minus Query: 217 cctgaatgatggctggaagtctgcaggagc 246 |||||||||||||||||| ||||||||||| Sbjct: 67516 cctgaatgatggctggaattctgcaggagc 67487
>gb|BT019280.1| Zea mays clone Contig953.F mRNA sequence Length = 872 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 209 ccagagctcctgaatgatggctggaagtctgcaggagctcc 249 ||||| |||||||| ||||||||||| || ||||||||||| Sbjct: 317 ccagaactcctgaaagatggctggaactcagcaggagctcc 357
>dbj|AB054123.1| Oryza sativa (japonica cultivar-group) mRNA for ribosomal protein S10, complete cds Length = 756 Score = 48.1 bits (24), Expect = 0.014 Identities = 39/44 (88%) Strand = Plus / Minus Query: 206 ccaccagagctcctgaatgatggctggaagtctgcaggagctcc 249 |||||||||||||| || ||||| ||||| || ||||||||||| Sbjct: 573 ccaccagagctcctaaaggatggttggaactcagcaggagctcc 530
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence Length = 1590432 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 135 cgccaaagccaccagcaccaccgcca 160 |||||||||||||| ||||||||||| Sbjct: 1048467 cgccaaagccaccaacaccaccgcca 1048442
>gb|AC091781.20| Trypanosoma brucei chromosome 4 clone RPCI93-30K5, complete sequence Length = 144951 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 135 cgccaaagccaccagcaccaccgcca 160 |||||||||||||| ||||||||||| Sbjct: 17268 cgccaaagccaccaacaccaccgcca 17243
>gb|AC159410.1| Trypanosoma brucei chromosome 4 clone RPCI93-1D20, complete sequence Length = 154694 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 cgccaaagccaccagcaccaccgcca 160 |||||||||||||| ||||||||||| Sbjct: 117524 cgccaaagccaccaacaccaccgcca 117549
>ref|XM_818647.1| Trypanosoma brucei TREU927 clone RPCI93-1D20 cytoskeleton-associated protein CAP5.5 (Tb927.4.3950) partial mRNA Length = 2562 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 cgccaaagccaccagcaccaccgcca 160 |||||||||||||| ||||||||||| Sbjct: 59 cgccaaagccaccaacaccaccgcca 84
>ref|XM_801401.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510161.20) partial mRNA Length = 3381 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 gccaaagccaccagcaccaccg 157 |||||||||||||||||||||| Sbjct: 1171 gccaaagccaccagcaccaccg 1192
>ref|XM_815304.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506459.270) partial mRNA Length = 3111 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 gccaaagccaccagcaccaccg 157 |||||||||||||||||||||| Sbjct: 931 gccaaagccaccagcaccaccg 952
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 44.1 bits (22), Expect = 0.21 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 89 aaaacatcacatccgaactacgaggaagttcactccat 126 ||||||||| |||| ||||||| ||||||||||||||| Sbjct: 153789 aaaacatcatatccaaactacg-ggaagttcactccat 153753
>ref|XM_971185.1| PREDICTED: Tribolium castaneum hypothetical protein LOC658325 (LOC658325), mRNA Length = 453 Score = 44.1 bits (22), Expect = 0.21 Identities = 25/26 (96%) Strand = Plus / Minus Query: 185 ccgccgcggccaaatccacctccacc 210 ||||||| |||||||||||||||||| Sbjct: 173 ccgccgccgccaaatccacctccacc 148
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.21 Identities = 35/38 (92%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 89 aaaacatcacatccgaactacgaggaagttcactccat 126 ||||||||| |||| ||||||| ||||||||||||||| Sbjct: 21340315 aaaacatcatatccaaactacg-ggaagttcactccat 21340279 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 ccaccagcaccaccgccaccacgg 166 |||||||||||||| ||||||||| Sbjct: 19127485 ccaccagcaccaccaccaccacgg 19127462
>ref|XM_310655.2| Anopheles gambiae str. PEST ENSANGP00000020024 (ENSANGG00000017535), partial mRNA Length = 1218 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 143 ccaccagcaccaccgccaccac 164 |||||||||||||||||||||| Sbjct: 788 ccaccagcaccaccgccaccac 809
>gb|AY363637.1| Pholis gunnellus mixed lineage leukemia-like protein (MLL) gene, exons 25, 26 and partial cds Length = 859 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 143 ccaccagcaccaccgccaccac 164 |||||||||||||||||||||| Sbjct: 566 ccaccagcaccaccgccaccac 587
>ref|XM_368131.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01113.4) partial mRNA Length = 513 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Minus Query: 180 cgccaccgccgcggccaaatccacc 204 |||||| |||||||||||||||||| Sbjct: 496 cgccacggccgcggccaaatccacc 472
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 ccagcaccaccgccaccacgg 166 ||||||||||||||||||||| Sbjct: 434535 ccagcaccaccgccaccacgg 434515
>ref|XM_710295.1| Candida albicans SC5314 hypothetical protein (CaO19_3078), mRNA Length = 384 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 caccagcaccaccgccaccac 164 ||||||||||||||||||||| Sbjct: 37 caccagcaccaccgccaccac 17
>ref|XM_710294.1| Candida albicans SC5314 hypothetical protein (CaO19_3077), mRNA Length = 2061 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 caccagcaccaccgccaccac 164 ||||||||||||||||||||| Sbjct: 1673 caccagcaccaccgccaccac 1693
>emb|CR376839.12| Zebrafish DNA sequence from clone DKEY-75G22 in linkage group 2, complete sequence Length = 127371 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 tcactccattgggctagcgcc 138 ||||||||||||||||||||| Sbjct: 50352 tcactccattgggctagcgcc 50372
>ref|XM_818056.1| Trypanosoma brucei TREU927 G-actin binding protein (Tb10.6k15.1160) partial mRNA Length = 810 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 gccaccagcaccaccgccacc 162 ||||||||||||||||||||| Sbjct: 12 gccaccagcaccaccgccacc 32
>gb|AC012393.5|ATAC012393 Arabidopsis thaliana chromosome III BAC F10A16 genomic sequence, complete sequence Length = 87045 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 aatccacctccaccagagctc 217 ||||||||||||||||||||| Sbjct: 52838 aatccacctccaccagagctc 52818
>gb|AC116950.5| Mus musculus BAC clone RP23-56K4 from 15, complete sequence Length = 225940 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 caccagcaccaccgccaccac 164 ||||||||||||||||||||| Sbjct: 109360 caccagcaccaccgccaccac 109380
>gb|AC105075.6| Mus musculus chromosome 1, clone RP23-366P11, complete sequence Length = 195511 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 ttgcaaacatcactacataaa 63 ||||||||||||||||||||| Sbjct: 186359 ttgcaaacatcactacataaa 186379
>emb|AL627248.7| Zebrafish DNA sequence from clone RP71-1G18 in linkage group 2 Contains three novel genes, a novel gene similar to human CASQ1 (calsequestrin 1), six novel genes similar to vertebrate C1Q (gliacolin), a novel gene similar to human HNRPC (heterogeneous nuclear ribonucleoprotein C (C1/C2)), a novel gene for a protein similar to human H326 protein, two novel genes for proteins similar to human apolipoproteins, a novel gene similar to human TEP1 (telomerase-associated protein 1) and a CpG island, complete sequence Length = 143586 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 tcactccattgggctagcgcc 138 ||||||||||||||||||||| Sbjct: 57477 tcactccattgggctagcgcc 57457
>gb|AY113445.1| Drosophila melanogaster RE29777 full insert cDNA Length = 5386 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 gccaaagccaccagcaccacc 156 ||||||||||||||||||||| Sbjct: 1226 gccaaagccaccagcaccacc 1246
>ref|NM_166242.1| Drosophila melanogaster CG10936-RB, transcript variant B (CG10936), mRNA Length = 5370 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 gccaaagccaccagcaccacc 156 ||||||||||||||||||||| Sbjct: 1225 gccaaagccaccagcaccacc 1245
>ref|NM_137395.1| Drosophila melanogaster CG10936-RA, transcript variant A (CG10936), mRNA Length = 5373 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 gccaaagccaccagcaccacc 156 ||||||||||||||||||||| Sbjct: 1228 gccaaagccaccagcaccacc 1248
>gb|AF381614.1|AF381614 Magnaporthe grisea clone BAC 14F6 gene sequence Length = 110467 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Plus Query: 180 cgccaccgccgcggccaaatccacc 204 |||||| |||||||||||||||||| Sbjct: 3284 cgccacggccgcggccaaatccacc 3308
>gb|AC007697.5|AC007697 Drosophila melanogaster, chromosome 2R, region 54D4-54E7, BAC clone BACR12C23, complete sequence Length = 194897 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 gccaaagccaccagcaccacc 156 ||||||||||||||||||||| Sbjct: 57817 gccaaagccaccagcaccacc 57797
>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome Length = 335593 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 gcaccaccgccaccacgggca 169 ||||||||||||||||||||| Sbjct: 210165 gcaccaccgccaccacgggca 210145
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 caaagccaccagcaccaccgc 158 ||||||||||||||||||||| Sbjct: 5893056 caaagccaccagcaccaccgc 5893076
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 ctgcgccaccgccgcggccaaatcc 201 |||||||||||||||||||| |||| Sbjct: 5432480 ctgcgccaccgccgcggccagatcc 5432456 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 ccaccagcaccaccgccaccacgg 166 ||||| |||||||||||||||||| Sbjct: 2355611 ccaccggcaccaccgccaccacgg 2355634
>gb|AE003802.3| Drosophila melanogaster chromosome 2R, section 48 of 73 of the complete sequence Length = 246095 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 gccaaagccaccagcaccacc 156 ||||||||||||||||||||| Sbjct: 53131 gccaaagccaccagcaccacc 53111
>emb|AL845366.6| Zebrafish DNA sequence from clone CH211-167C22 in linkage group 20, complete sequence Length = 149189 Score = 42.1 bits (21), Expect = 0.84 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 tcactccattgggctagcgcc 138 ||||||||||||||||||||| Sbjct: 110914 tcactccattgggctagcgcc 110934
>gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, complete sequence Length = 237824 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Plus Query: 208 accagagctcctgaatgatggctgg 232 |||||||| |||||||||||||||| Sbjct: 35614 accagagcacctgaatgatggctgg 35638
>dbj|AB070346.1| Tetragenococcus halophilus genes for ORF1, HrcA, GrpE, DnaK and DnaJ, complete cds Length = 6608 Score = 42.1 bits (21), Expect = 0.84 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 cgccaaagccaccagcaccaccgcc 159 ||||||| ||||||||||||||||| Sbjct: 5576 cgccaaatccaccagcaccaccgcc 5552
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 acctgcgccaccgccgcggc 194 |||||||||||||||||||| Sbjct: 229601 acctgcgccaccgccgcggc 229582
>gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome 7, complete sequence Length = 214959 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 cgccaccgccgcggccaaatccacctccacca 211 |||||||||||| |||| ||||||||||||| Sbjct: 17024 cgccaccgccgccgccacctccacctccacca 17055
>ref|XM_478537.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1104 Score = 40.1 bits (20), Expect = 3.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 171 agccacctgcgccaccgccgcggccaaatccacctc 206 |||| ||| |||||||||||| ||||| |||||||| Sbjct: 747 agccgcctccgccaccgccgccgccaactccacctc 712
>ref|XM_472288.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 594 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 ccaccagcaccaccgccaccacgg 166 |||||||||||||| ||||||||| Sbjct: 213 ccaccagcaccaccaccaccacgg 236
>ref|XM_457172.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B04697g) partial mRNA Length = 291 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agccaccagcaccaccgcca 160 |||||||||||||||||||| Sbjct: 181 agccaccagcaccaccgcca 162
>ref|XM_710366.1| Candida albicans SC5314 hypothetical protein (CaO19_10591), mRNA Length = 549 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 accagcaccaccgccaccac 164 |||||||||||||||||||| Sbjct: 219 accagcaccaccgccaccac 200
>ref|XM_710365.1| Candida albicans SC5314 hypothetical protein (CaO19_10590), mRNA Length = 771 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 accagcaccaccgccaccac 164 |||||||||||||||||||| Sbjct: 387 accagcaccaccgccaccac 406
>gb|AC084158.2| Caenorhabditis elegans cosmid Y69A2AR, complete sequence Length = 188616 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 ccaaagccaccagcaccaccgccaccac 164 |||||||||||| |||||||||| |||| Sbjct: 71921 ccaaagccaccaccaccaccgcctccac 71948
>gb|AY225464.1| Klebsiella pneumoniae MrkDV3 gene, complete cds Length = 984 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 145 accagcaccaccgccaccacgggc 168 ||||||||||||||||||| |||| Sbjct: 730 accagcaccaccgccaccatgggc 753
>emb|CT030058.1| Xenopus tropicalis finished cDNA, clone TEgg060f09 Length = 852 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 gccaaagccaccagcaccac 155 |||||||||||||||||||| Sbjct: 496 gccaaagccaccagcaccac 477
>emb|CR974458.2| Pig DNA sequence from clone CH242-29M17 on chromosome 17, complete sequence Length = 177939 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 atcactacataaaaccatca 70 |||||||||||||||||||| Sbjct: 137335 atcactacataaaaccatca 137316
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 ccagcaccaccgccaccacg 165 |||||||||||||||||||| Sbjct: 2719725 ccagcaccaccgccaccacg 2719744
>emb|AL109982.1|HSJ281E18 Human DNA sequence from clone RP1-281E18 on chromosome 6p12.1-12.3, complete sequence Length = 74586 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aagatagcatattacagata 26 |||||||||||||||||||| Sbjct: 10969 aagatagcatattacagata 10988
>emb|AL020998.1|HS745E8 Human DNA sequence from clone RP4-745E8 on chromosome 1p35.2-36.13 Contains the gene for a novel protein (FLJ43845, FLJ32784) and a novel gene, complete sequence Length = 80767 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 137 ccaaagccaccagcaccaccgccaccac 164 |||||||||||| ||||||| ||||||| Sbjct: 46735 ccaaagccaccaccaccaccaccaccac 46708
>emb|CR788255.6| Zebrafish DNA sequence from clone DKEY-9C18 in linkage group 2, complete sequence Length = 210464 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ctccattgggctagcgccaa 140 |||||||||||||||||||| Sbjct: 124234 ctccattgggctagcgccaa 124253 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ctccattgggctagcgccaa 140 |||||||||||||||||||| Sbjct: 92047 ctccattgggctagcgccaa 92066
>emb|AJ630128.1| Bacteriophage S-PM2 complete genome Length = 196280 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caccagcaccaccgccacca 163 |||||||||||||||||||| Sbjct: 161472 caccagcaccaccgccacca 161453
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agccaccagcaccaccgcca 160 |||||||||||||||||||| Sbjct: 388676 agccaccagcaccaccgcca 388657
>gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, complete sequence Length = 223809 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tcactacataaaaccatcat 71 |||||||||||||||||||| Sbjct: 112770 tcactacataaaaccatcat 112751
>gb|AC090638.11| Homo sapiens chromosome 18, clone RP11-429H5, complete sequence Length = 180429 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ggccaaatccacctccacca 211 |||||||||||||||||||| Sbjct: 78113 ggccaaatccacctccacca 78094
>emb|BX469889.7| Zebrafish DNA sequence from clone DKEY-156P3 in linkage group 18, complete sequence Length = 177975 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 ggctggaagtctgcaggagc 246 |||||||||||||||||||| Sbjct: 118345 ggctggaagtctgcaggagc 118364
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 accagcaccaccgccaccac 164 |||||||||||||||||||| Sbjct: 5345447 accagcaccaccgccaccac 5345466
>gb|AC079789.7| Homo sapiens BAC clone RP11-475B2 from 4, complete sequence Length = 198586 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 gctcctgaatgatggctgga 233 |||||||||||||||||||| Sbjct: 138534 gctcctgaatgatggctgga 138515
>gb|AC013759.6|AC013759 Homo sapiens chromosome 18, clone RP11-2E13, complete sequence Length = 166700 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ggccaaatccacctccacca 211 |||||||||||||||||||| Sbjct: 13627 ggccaaatccacctccacca 13646
>ref|NM_067819.1| Caenorhabditis elegans Y69A2AR.14 (Y69A2AR.14) mRNA, complete cds Length = 1668 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 ccaaagccaccagcaccaccgccaccac 164 |||||||||||| |||||||||| |||| Sbjct: 916 ccaaagccaccaccaccaccgcctccac 943
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 171 agccacctgcgccaccgccgcggccaaatccacctc 206 |||| ||| |||||||||||| ||||| |||||||| Sbjct: 20773161 agccgcctccgccaccgccgccgccaactccacctc 20773126
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agccaccagcaccaccgcca 160 |||||||||||||||||||| Sbjct: 20782301 agccaccagcaccaccgcca 20782282
>emb|BX813333.7| Mouse DNA sequence from clone RP23-255A6 on chromosome 2, complete sequence Length = 163063 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 ccaaagccaccagcaccaccgccaccac 164 |||||||||||| ||||||| ||||||| Sbjct: 68457 ccaaagccaccaccaccaccaccaccac 68484
>ref|NM_008085.1| Mus musculus glyceraldehyde-3-phosphate dehydrogenase, spermatogenic (Gapdhs), mRNA Length = 1317 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 cgccaccgccgcggccaaatccacctccacca 211 |||||||||||| |||| ||||||||||||| Sbjct: 158 cgccaccgccgccgccacctccacctccacca 189
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ccaaagccaccagcaccacc 156 |||||||||||||||||||| Sbjct: 1178453 ccaaagccaccagcaccacc 1178434
>dbj|AP003613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E11 Length = 148798 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agccaccagcaccaccgcca 160 |||||||||||||||||||| Sbjct: 36976 agccaccagcaccaccgcca 36957
>dbj|AP007253.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0004O05 Length = 140513 Score = 40.1 bits (20), Expect = 3.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 180 cgccaccgccgcg-gccaaatccacctccacc 210 ||||||||||||| ||||| |||||||||||| Sbjct: 139430 cgccaccgccgcgcgccaactccacctccacc 139461
>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0681F05 Length = 144741 Score = 40.1 bits (20), Expect = 3.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 171 agccacctgcgccaccgccgcggccaaatccacctc 206 |||| ||| |||||||||||| ||||| |||||||| Sbjct: 125911 agccgcctccgccaccgccgccgccaactccacctc 125876
>dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D01, full insert sequence Length = 1310 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 ccaccagcaccaccgccaccacgg 166 |||||||||||||| ||||||||| Sbjct: 634 ccaccagcaccaccaccaccacgg 657
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 cacctgcgccaccgccgcgg 193 |||||||||||||||||||| Sbjct: 754386 cacctgcgccaccgccgcgg 754367
>emb|BX470166.11| Zebrafish DNA sequence from clone CH211-238N5 in linkage group 18, complete sequence Length = 117241 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 ggctggaagtctgcaggagc 246 |||||||||||||||||||| Sbjct: 29412 ggctggaagtctgcaggagc 29393
>gb|AC156277.6| Mus musculus 6 BAC RP24-309B5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152539 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aaacttataactcaaaaaca 94 |||||||||||||||||||| Sbjct: 89429 aaacttataactcaaaaaca 89410
>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete sequence Length = 167067 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccacctccaccagagctcct 219 |||||||||||||||||||| Sbjct: 122623 ccacctccaccagagctcct 122604
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 ccaccagcaccaccgccaccacgg 166 |||||||||||||| ||||||||| Sbjct: 61006 ccaccagcaccaccaccaccacgg 60983
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 gctggaagtctgcaggagct 247 |||||||||||||||||||| Sbjct: 2577266 gctggaagtctgcaggagct 2577285
>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183, complete sequence Length = 70173 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 agccaccagcaccaccgccaccac 164 |||||||| ||||||||||||||| Sbjct: 24120 agccaccaccaccaccgccaccac 24143
>emb|AL929314.9| Zebrafish DNA sequence from clone CH211-155E19 in linkage group 5, complete sequence Length = 176048 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ataactcaaaaacatcacat 100 |||||||||||||||||||| Sbjct: 50013 ataactcaaaaacatcacat 49994
>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence Length = 241077 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 180 cgccaccgccgcggccaaatccacctccacca 211 |||||||||||| |||| ||||||||||||| Sbjct: 61330 cgccaccgccgccgccacctccacctccacca 61299
>gb|U09964.1|MMU09964 Mus musculus ICR/Swiss glyceraldehyde 3-phosphate dehydrogenase (Gapd-S) gene, complete cds Length = 11462 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 cgccaccgccgcggccaaatccacctccacca 211 |||||||||||| |||| ||||||||||||| Sbjct: 3250 cgccaccgccgccgccacctccacctccacca 3281
>gb|AY424801.2| Dicentrarchus labrax HMG-CoA reductase mRNA, complete cds Length = 3860 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 cacctccaccagagctcctg 220 |||||||||||||||||||| Sbjct: 2287 cacctccaccagagctcctg 2268
>emb|AL831754.2| Mouse DNA sequence from clone RP23-295A1 on chromosome 4, complete sequence Length = 189029 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 agccaccagcaccaccgccaccac 164 |||||||||||||||| ||||||| Sbjct: 141118 agccaccagcaccaccaccaccac 141141
>gb|M60978.1|MUSGAPDS Mus musculus testis-specific isoform of glyceraldehyde 3-phosphate dehydrogenase (Gapd-S) mRNA, complete cds Length = 1457 Score = 40.1 bits (20), Expect = 3.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 cgccaccgccgcggccaaatccacctccacca 211 |||||||||||| |||| ||||||||||||| Sbjct: 191 cgccaccgccgccgccacctccacctccacca 222 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,603,056 Number of Sequences: 3902068 Number of extensions: 2603056 Number of successful extensions: 65466 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 64729 Number of HSP's gapped (non-prelim): 764 length of query: 257 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 235 effective length of database: 17,147,199,772 effective search space: 4029591946420 effective search space used: 4029591946420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
