>emb|Z50799.1|HVHHMG12 H.vulgare mRNA for HMG1/2-like protein
          Length = 974

 Score =  202 bits (102), Expect = 1e-49
 Identities = 108/110 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggacaacaacagcttaatctaacattacccaaactgatattatcacaatgttagccgat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 937 gggacaacaacagcttaatctaacattacccaaactgattttatcacaatgttagccgat 878

                                                             
Query: 61  gacaatggacggaaagagtgaccatctaggtaggtacaggcaggggcaca 110
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 aacaatggacggaaagagtgaccatctaggtaggtacaggcaggggcaca 828

>gb|L28094.1|BLYCDNA Barley mRNA sequence
          Length = 942

 Score =  178 bits (90), Expect = 2e-42
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                       
Query: 21  taacattacccaaactgatattatcacaatgttagccgatgacaatggacggaaagagtg 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 taacattacccaaactgatattatcacaatgttagccgatgacaatggacggaaagagtg 864

                                         
Query: 81  accatctaggtaggtacaggcaggggcaca 110
           ||||||||||||||||||||||||||||||
Sbjct: 863 accatctaggtaggtacaggcaggggcaca 834

>emb|Z11540.1|TAHMGW T.aestivum mRNA for high mobility group protein (HMGW)
          Length = 923

 Score =  147 bits (74), Expect = 8e-33
 Identities = 83/86 (96%)
 Strand = Plus / Minus

                                                                       
Query: 7   acaacagcttaatctaacattacccaaactgatattatcacaatgttagccgatgacaat 66
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 917 acaacagcttaatctaacattacccagactgatattatcacaatgttagccggtgacaat 858

                                     
Query: 67  ggacggaaagagtgaccatctaggta 92
           ||||||||||||| ||||||||||||
Sbjct: 857 ggacggaaagagtaaccatctaggta 832

>gb|AY262827.1| Oryza sativa (indica cultivar-group) HMGB1 gene, complete cds
          Length = 3659

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                   
Query: 15   ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 69
            |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 3347 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 3294

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15       ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 69
                |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 30479221 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 30479168

>gb|AF541859.1| Oryza sativa (indica cultivar-group) HMG1 protein (HMG1) mRNA,
           complete cds
          Length = 918

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                  
Query: 15  ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 69
           |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 838

>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017G10
          Length = 166700

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                     
Query: 15     ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 69
              |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 116582 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 116529

>gb|AF093632.1|AF093632 Oryza sativa high mobility group protein (HMG) mRNA, complete cds
          Length = 869

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 53/55 (96%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                  
Query: 15  ttaatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 69
           |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ttaatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 789

>emb|X66077.1|ZMMNB1B Z.mays MNB1b mRNA for DNA-binding protein
          Length = 918

 Score = 81.8 bits (41), Expect = 4e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                            
Query: 14  cttaatctaacattacccaaactgatattatcacaatgttagccgatga 62
           ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 847 cttaatctaacattacccaaactgacattatgacaatgttagccgatga 799

>emb|X58282.1|ZMHMGPMR Maize mRNA for a high mobility group protein
          Length = 885

 Score = 81.8 bits (41), Expect = 4e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                            
Query: 14  cttaatctaacattacccaaactgatattatcacaatgttagccgatga 62
           ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 852 cttaatctaacattacccaaactgacattatgacaatgttagccgatga 804

>emb|AJ131373.1|ZMA131373 Zea mays hmga gene, exons 1-7
          Length = 2133

 Score = 81.8 bits (41), Expect = 4e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 14   cttaatctaacattacccaaactgatattatcacaatgttagccgatga 62
            ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1719 cttaatctaacattacccaaactgacattatgacaatgttagccgatga 1671

>dbj|AK068898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170E23, full
           insert sequence
          Length = 998

 Score = 81.8 bits (41), Expect = 4e-13
 Identities = 51/53 (96%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 17  aatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 69
           |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 998 aatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 947

>dbj|AK062226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C12, full
           insert sequence
          Length = 913

 Score = 81.8 bits (41), Expect = 4e-13
 Identities = 51/53 (96%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 17  aatctaacattacccaaactgatattatcacaatgttagccgatgacaatgga 69
           |||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 913 aatctaacat-acgcaaactgatattatcacaatgttagccgatgacaatgga 862

>gb|AY103575.1| Zea mays PCO080122 mRNA sequence
          Length = 1153

 Score = 81.8 bits (41), Expect = 4e-13
 Identities = 47/49 (95%)
 Strand = Plus / Minus

                                                             
Query: 14   cttaatctaacattacccaaactgatattatcacaatgttagccgatga 62
            ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 1039 cttaatctaacattacccaaactgacattatgacaatgttagccgatga 991

>gb|AC004942.1| Homo sapiens PAC clone RP5-981B16 from 7, complete sequence
          Length = 76079

 Score = 40.1 bits (20), Expect = 1.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    cccaaactgatattatcaca 48
             ||||||||||||||||||||
Sbjct: 66501 cccaaactgatattatcaca 66482

>gb|AC010026.7| Drosophila melanogaster 3L BAC RP98-1I24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179776

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 23     acattacccaaactgatattatc 45
              |||| ||||||||||||||||||
Sbjct: 165328 acataacccaaactgatattatc 165350

>gb|AC010010.6| Drosophila melanogaster 3L BAC RP98-13F6 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167977

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 23     acattacccaaactgatattatc 45
              |||| ||||||||||||||||||
Sbjct: 159399 acataacccaaactgatattatc 159377

>dbj|BS000130.1| Pan troglodytes chromosome 22 clone:CH251-010A09, map 22, complete
              sequences
          Length = 201997

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ctaggtaggtacaggcagg 104
              |||||||||||||||||||
Sbjct: 179246 ctaggtaggtacaggcagg 179264

>gb|AY111554.1| Zea mays CL1493_2 mRNA sequence
          Length = 797

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 40  attatcacaatgttagccgatga 62
           ||||| |||||||||||||||||
Sbjct: 794 attatgacaatgttagccgatga 772

>gb|AC007080.2|AC007080 Mus musculus chromosome 17 clone BAC 205A4, complete sequence
          Length = 39909

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 92    aggtacaggcaggggcaca 110
             |||||||||||||||||||
Sbjct: 23065 aggtacaggcaggggcaca 23047

>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete
             sequence
          Length = 307657

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 23    acattacccaaactgatattatc 45
             |||| ||||||||||||||||||
Sbjct: 76995 acataacccaaactgatattatc 76973

>dbj|AP001743.1| Homo sapiens genomic DNA, chromosome 21q, section 87/105
          Length = 219256

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ctaggtaggtacaggcagg 104
              |||||||||||||||||||
Sbjct: 179654 ctaggtaggtacaggcagg 179672

>emb|CR974466.14| Mouse DNA sequence from clone RP23-331E12 on chromosome 17, complete
            sequence
          Length = 210806

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 92   aggtacaggcaggggcaca 110
            |||||||||||||||||||
Sbjct: 2626 aggtacaggcaggggcaca 2608

>dbj|AP001615.1| Homo sapiens genomic DNA, chromosome 21, clone:KB657H6, MX1-D21S171
              region, complete sequence
          Length = 124516

 Score = 38.2 bits (19), Expect = 5.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 86     ctaggtaggtacaggcagg 104
              |||||||||||||||||||
Sbjct: 119726 ctaggtaggtacaggcagg 119744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 753,430
Number of Sequences: 3902068
Number of extensions: 753430
Number of successful extensions: 46562
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46531
Number of HSP's gapped (non-prelim): 31
length of query: 110
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 89
effective length of database: 17,151,101,840
effective search space: 1526448063760
effective search space used: 1526448063760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)