ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet51c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
2dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic D... 98 2e-17
3dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
4dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 2e-17
5ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group... 74 3e-10
6ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-10
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
8dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
9dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
10dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
11dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
12ref|XM_467877.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
13dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
14ref|XM_467879.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-05
15ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA 56 7e-05
16dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
17dbj|AK070419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 7e-05
18gb|AY105815.1| Zea mays PCO102946 mRNA sequence 44 0.27
19emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 42 1.1
20gb|AY230855.1| Xanthomonas sp. 35Y 70 kDa protein gene, complete... 42 1.1
21ref|XM_469111.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.2
22ref|NM_189865.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.2
23gb|AY659306.1| Synthetic construct Peudomonas aeruginosa clone F... 40 4.2
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.2
25emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 ... 40 4.2
26gb|AY907537.1| Uncultured bacterial symbiont of Discodermia diss... 40 4.2
27emb|AJ557546.1|MLI557546 Melittangium lichenicola melithiazol ge... 40 4.2
28gb|AY707771.1| Fragaria chiloensis latent virus isolate CFRA 908... 40 4.2
29emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in... 40 4.2
30gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, co... 40 4.2
31ref|XM_694557.1| PREDICTED: Danio rerio similar to neurochondrin... 40 4.2
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
34gb|AE004796.1| Pseudomonas aeruginosa PAO1, section 357 of 529 o... 40 4.2
35gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genom... 40 4.2
36gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.2
37dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
38dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 4.2
39dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.2
40emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in ... 40 4.2
41dbj|AK105700.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
42dbj|AK062598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
43dbj|AK058704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                           
Query: 225     tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
               ||||| ||||||||||||||||| ||| |||||||||| |||||||| || ||||| |||
Sbjct: 6191263 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 6191322

                                            
Query: 285     ctcccgtgcgcgccgtgggcgttgtagct 313
               |  |||||||||||||| |||||||||||
Sbjct: 6191323 cggccgtgcgcgccgtgcgcgttgtagct 6191351



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 266     cgccggcagcaggtacttcc 285
               ||||||||||||||||||||
Sbjct: 6189005 cgccggcagcaggtacttcc 6189024
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>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0436F11
          Length = 165550

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                          
Query: 225    tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
              ||||| ||||||||||||||||| ||| |||||||||| |||||||| || ||||| |||
Sbjct: 105082 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 105141

                                           
Query: 285    ctcccgtgcgcgccgtgggcgttgtagct 313
              |  |||||||||||||| |||||||||||
Sbjct: 105142 cggccgtgcgcgccgtgcgcgttgtagct 105170



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    cgccggcagcaggtacttcc 285
              ||||||||||||||||||||
Sbjct: 102824 cgccggcagcaggtacttcc 102843
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>dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053E02, full
           insert sequence
          Length = 837

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                       
Query: 225 tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
           ||||| ||||||||||||||||| ||| |||||||||| |||||||| || ||||| |||
Sbjct: 40  tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 99

                                        
Query: 285 ctcccgtgcgcgccgtgggcgttgtagct 313
           |  |||||||||||||| |||||||||||
Sbjct: 100 cggccgtgcgcgccgtgcgcgttgtagct 128
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>dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G10, full
           insert sequence
          Length = 962

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                       
Query: 225 tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
           ||||| ||||||||||||||||| ||| |||||||||| |||||||| || ||||| |||
Sbjct: 851 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 792

                                        
Query: 285 ctcccgtgcgcgccgtgggcgttgtagct 313
           |  |||||||||||||| |||||||||||
Sbjct: 791 cggccgtgcgcgccgtgcgcgttgtagct 763
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>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2 mRNA
          Length = 1129

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                        
Query: 225  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 1033 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 974

                                                 
Query: 285  ctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
            |||| || |||||||| |||||||||||| |||||||
Sbjct: 973  ctcctgttcgcgccgttggcgttgtagctggctccgg 937
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>ref|XM_467873.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1127

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                        
Query: 225  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 1031 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 972

                                                 
Query: 285  ctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
            |||| || |||||||| |||||||||||| |||||||
Sbjct: 971  ctcctgttcgcgccgttggcgttgtagctggctccgg 935
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                            
Query: 225      tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
                ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 31842723 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 31842782

                                                     
Query: 285      ctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
                |||| || |||||||| |||||||||||| |||||||
Sbjct: 31842783 ctcctgttcgcgccgttggcgttgtagctggctccgg 31842819



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                            
Query: 249      gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 308
                ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 31859226 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 31859285

                           
Query: 309      tagctcgctcc 319
                |||||||||||
Sbjct: 31859286 tagctcgctcc 31859296



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                            
Query: 234      gtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgc 293
                ||||||||||| || ||| ||||||| |  |||||||| | |||||| ||||||||||||
Sbjct: 31870943 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 31870884

                                    
Query: 294      gcgccgtgggcgttgtagct 313
                || || |  |||||||||||
Sbjct: 31870883 gccccattcgcgttgtagct 31870864
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0471A11
          Length = 157740

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                        
Query: 225  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 3724 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 3783

                                                 
Query: 285  ctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
            |||| || |||||||| |||||||||||| |||||||
Sbjct: 3784 ctcctgttcgcgccgttggcgttgtagctggctccgg 3820



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 249   gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 308
             ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 20227 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 20286

                        
Query: 309   tagctcgctcc 319
             |||||||||||
Sbjct: 20287 tagctcgctcc 20297



 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                         
Query: 234   gtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgc 293
             ||||||||||| || ||| ||||||| |  |||||||| | |||||| ||||||||||||
Sbjct: 31944 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 31885

                                 
Query: 294   gcgccgtgggcgttgtagct 313
             || || |  |||||||||||
Sbjct: 31884 gccccattcgcgttgtagct 31865
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>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0627E03
          Length = 159861

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                          
Query: 225    tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
              ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 138521 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 138580

                                                   
Query: 285    ctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
              |||| || |||||||| |||||||||||| |||||||
Sbjct: 138581 ctcctgttcgcgccgttggcgttgtagctggctccgg 138617



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                          
Query: 249    gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 308
              ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 155024 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 155083

                         
Query: 309    tagctcgctcc 319
              |||||||||||
Sbjct: 155084 tagctcgctcc 155094
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>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full
            insert sequence
          Length = 1128

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                        
Query: 225  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 1032 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 973

                                                 
Query: 285  ctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
            |||| || |||||||| |||||||||||| |||||||
Sbjct: 972  ctcctgttcgcgccgttggcgttgtagctggctccgg 936
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>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full
            insert sequence
          Length = 1127

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                        
Query: 225  tacaccagcgtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttc 284
            ||||| ||||||  ||||| ||| || ||||| | | ||| |||||| ||||||||||||
Sbjct: 1031 tacacaagcgtgtcgcaggaggacgttgcgggattgtacaacgccgggagcaggtacttc 972

                                                 
Query: 285  ctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
            |||| || |||||||| |||||||||||| |||||||
Sbjct: 971  ctcctgttcgcgccgttggcgttgtagctggctccgg 935
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>ref|XM_467877.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1222

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 249  gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 308
            ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 1036 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 977

                       
Query: 309  tagctcgctcc 319
            |||||||||||
Sbjct: 976  tagctcgctcc 966
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>dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C09, full
            insert sequence
          Length = 1222

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 249  gtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttg 308
            ||||| || |||||||  ||||| |||||||| ||||||||||| || || | |||||||
Sbjct: 1036 gtggcaggatcgaacaaagccggaagcaggtatttcctcccgtgtgctccattggcgttg 977

                       
Query: 309  tagctcgctcc 319
            |||||||||||
Sbjct: 976  tagctcgctcc 966
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>ref|XM_467879.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 936

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 gtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgc 293
           ||||||||||| || ||| ||||||| |  |||||||| | |||||| ||||||||||||
Sbjct: 926 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 867

                               
Query: 294 gcgccgtgggcgttgtagct 313
           || || |  |||||||||||
Sbjct: 866 gccccattcgcgttgtagct 847
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>ref|XM_467872.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 278 gtacttcctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
           ||||||||||| || |||||||| |||||||||||| |||||||
Sbjct: 979 gtacttcctcctgttcgcgccgttggcgttgtagctggctccgg 936
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>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full
           insert sequence
          Length = 1110

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 278 gtacttcctcccgtgcgcgccgtgggcgttgtagctcgctccgg 321
           ||||||||||| || |||||||| |||||||||||| |||||||
Sbjct: 979 gtacttcctcctgttcgcgccgttggcgttgtagctggctccgg 936
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>dbj|AK070419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J22, full
           insert sequence
          Length = 1187

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                       
Query: 234 gtggagcaggcggaggtggcggggtcgaacagcgccggcagcaggtacttcctcccgtgc 293
           ||||||||||| || ||| ||||||| |  |||||||| | |||||| ||||||||||||
Sbjct: 991 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 932

                               
Query: 294 gcgccgtgggcgttgtagct 313
           || || |  |||||||||||
Sbjct: 931 gccccattcgcgttgtagct 912
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>gb|AY105815.1| Zea mays PCO102946 mRNA sequence
          Length = 1238

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 264 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtagct 313
           |||||||| | |||||||||||||||||| || |||| ||| ||| ||||
Sbjct: 996 agcgccgggaccaggtacttcctcccgtgggccccgttggcattgaagct 947
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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 41      acaaaggctgatttacatttt 61
               |||||||||||||||||||||
Sbjct: 1738417 acaaaggctgatttacatttt 1738437
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>gb|AY230855.1| Xanthomonas sp. 35Y 70 kDa protein gene, complete cds
          Length = 2037

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 257 gtcgaacagcgccggcagcag 277
           |||||||||||||||||||||
Sbjct: 837 gtcgaacagcgccggcagcag 817
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>ref|XM_469111.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 444

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 236 ggagcaggcggaggtggcggggtcgaacagcg 267
           ||||||||||||||||||| ||| || |||||
Sbjct: 51  ggagcaggcggaggtggcgaggtggagcagcg 20
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>ref|NM_189865.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 ggagcaggcggaggtggcgg 255
           ||||||||||||||||||||
Sbjct: 178 ggagcaggcggaggtggcgg 159
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>gb|AY659306.1| Synthetic construct Peudomonas aeruginosa clone FLH038416.01F
           PA3773 gene, partial cds
          Length = 1158

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 tcgaacagcgccggcagcag 277
           ||||||||||||||||||||
Sbjct: 494 tcgaacagcgccggcagcag 475
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 236      ggagcaggcggaggtggcggggtcgaacagcg 267
                ||||||||||||||||||| ||| || |||||
Sbjct: 25514096 ggagcaggcggaggtggcgaggtggagcagcg 25514065
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>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13,
             complete sequence
          Length = 189908

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   aatacagtttggctagatgg 165
             ||||||||||||||||||||
Sbjct: 93966 aatacagtttggctagatgg 93947
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>gb|AY907537.1| Uncultured bacterial symbiont of Discodermia dissoluta polyketide
             synthesis gene cluster, partial sequence
          Length = 124311

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 229   ccagcgtggagcaggcggaggtgg 252
             |||||||||||| |||||||||||
Sbjct: 36765 ccagcgtggagccggcggaggtgg 36788
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>emb|AJ557546.1|MLI557546 Melittangium lichenicola melithiazol gene cluster
          Length = 51855

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ggagcaggcggaggtggcgg 255
             ||||||||||||||||||||
Sbjct: 25240 ggagcaggcggaggtggcgg 25221
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>gb|AY707771.1| Fragaria chiloensis latent virus isolate CFRA 9087 segment RNA 2,
            complete sequence
          Length = 2570

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1    acgacaaacaaaattaccgcttac 24
            ||||||||| ||||||||||||||
Sbjct: 2401 acgacaaacgaaattaccgcttac 2378
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>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
            complete sequence
          Length = 262038

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   ctgatttacattttttattt 67
            ||||||||||||||||||||
Sbjct: 5871 ctgatttacattttttattt 5852
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>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence
          Length = 113199

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tgatttacattttttattta 68
             ||||||||||||||||||||
Sbjct: 45849 tgatttacattttttattta 45868
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>ref|XM_694557.1| PREDICTED: Danio rerio similar to neurochondrin isoform 1
           (LOC571005), partial mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 262 acagcgccggcagcaggtac 281
           ||||||||||||||||||||
Sbjct: 814 acagcgccggcagcaggtac 795
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      ggagcaggcggaggtggcgg 255
                ||||||||||||||||||||
Sbjct: 25618798 ggagcaggcggaggtggcgg 25618779
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 236      ggagcaggcggaggtggcggggtcgaacagcg 267
                ||||||||||||||||||| ||| || |||||
Sbjct: 25605405 ggagcaggcggaggtggcgaggtggagcagcg 25605374
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>gb|AE004796.1| Pseudomonas aeruginosa PAO1, section 357 of 529 of the complete
            genome
          Length = 12098

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  tcgaacagcgccggcagcag 277
            ||||||||||||||||||||
Sbjct: 6016 tcgaacagcgccggcagcag 5997
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>gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genomic sequence, complete
             sequence
          Length = 117046

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 236   ggagcaggcggaggtggcggggtcgaacagcg 267
             ||||||||||||||||||| ||| || |||||
Sbjct: 20756 ggagcaggcggaggtggcgaggtggagcagcg 20787
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 259     cgaacagcgccggcagcagg 278
               ||||||||||||||||||||
Sbjct: 4550911 cgaacagcgccggcagcagg 4550892
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>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ggagcaggcggaggtggcgg 255
             ||||||||||||||||||||
Sbjct: 72771 ggagcaggcggaggtggcgg 72752
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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    tactactagttgtacccaat 148
              ||||||||||||||||||||
Sbjct: 150700 tactactagttgtacccaat 150681
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 242     ggcggaggtggcggggtcgaacag 265
               ||||| ||||||||||||||||||
Sbjct: 5337221 ggcggcggtggcggggtcgaacag 5337244
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>emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in linkage group 11,
             complete sequence
          Length = 234851

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    gatttacattttttatttag 69
             ||||||||||||||||||||
Sbjct: 21220 gatttacattttttatttag 21201
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>dbj|AK105700.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D06, full
           insert sequence
          Length = 796

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 236 ggagcaggcggaggtggcggggtcgaacagcg 267
           ||||||||||||||||||| ||| || |||||
Sbjct: 142 ggagcaggcggaggtggcgaggtggagcagcg 111
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>dbj|AK062598.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F10, full
           insert sequence
          Length = 722

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 236 ggagcaggcggaggtggcggggtcgaacagcg 267
           ||||||||||||||||||| ||| || |||||
Sbjct: 68  ggagcaggcggaggtggcgaggtggagcagcg 37
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>dbj|AK058704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C08, full
           insert sequence
          Length = 1268

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 cgccggcagcaggtacttcc 285
           ||||||||||||||||||||
Sbjct: 976 cgccggcagcaggtacttcc 957


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,861,025
Number of Sequences: 3902068
Number of extensions: 2861025
Number of successful extensions: 57044
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56750
Number of HSP's gapped (non-prelim): 294
length of query: 321
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 299
effective length of database: 17,147,199,772
effective search space: 5127012731828
effective search space used: 5127012731828
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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