ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet51c01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X52472.1|TAPRP T.aestivum mRNA for a proline-rich protein Length = 1487 Score = 414 bits (209), Expect = e-113 Identities = 294/319 (92%), Gaps = 5/319 (1%) Strand = Plus / Minus Query: 1 gcacagatgaacgcataccagcacgcaaatgataattacaaagtagtaataatcatcatg 60 |||||||||||| |||||| ||||||||||||||||||| | ||||| || |||||||| Sbjct: 1462 gcacagatgaacatataccaacacgcaaatgataattacagaatagtagtactcatcatg 1403 Query: 61 ggtgcatggaacaagagaaactaaaaagggatgatggaatacaaggaatgcaaaaaagat 120 |||||||||||||| ||||||||||| || ||| ||||||||||||||| |||||| ||| Sbjct: 1402 ggtgcatggaacaacagaaactaaaa-ggaatggtggaatacaaggaatacaaaaa-gat 1345 Query: 121 gcatcatcactatctcgctagccggatactatgccacttattctggaaatagcacatcgt 180 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 1344 gcatcatcactatctcgctaaccggatactatgccacttattctagaaatagcacatcgt 1285 Query: 181 ggctccggacggggtcgatctcctcctccttcggctgtcatatgtgagcatcacatcaat 240 ||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| Sbjct: 1284 ggctccggacggggtcgatctcctcct---tcagctgtcatatgtgagtatcacatcaat 1228 Query: 241 tgtccgtcatcggcggcttgcccttcggaggcggctccggcttgggttcgggttcaggct 300 |||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 1227 tgtcagtcatcggtggcttgcccttcggaggcggctccggcttcggttcgggctcaggct 1168 Query: 301 tgggctctggcttaagcat 319 |||||||||||||| |||| Sbjct: 1167 tgggctctggcttaggcat 1149 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 294 tcaggcttgggctctggctta 314 ||||||||||||||||||||| Sbjct: 736 tcaggcttgggctctggctta 716 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 tcaggcttgggctctggctt 313 |||||||||||||||||||| Sbjct: 1084 tcaggcttgggctctggctt 1065
>gb|AF331853.1| Saccharum hybrid cultivar CP72-2086 proline-rich protein mRNA, partial sequence Length = 1173 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Minus Query: 273 ggctccggcttgggttcgggttcaggcttgggctctggctt 313 ||||| || ||||||| ||||||||||||||||| |||||| Sbjct: 732 ggctctggtttgggtttgggttcaggcttgggctttggctt 692 Score = 40.1 bits (20), Expect = 4.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 282 ttgggttcgggttcaggcttgggctctggctt 313 ||||||| ||| ||||||||||||||||||| Sbjct: 621 ttgggttttggtccaggcttgggctctggctt 590
>ref|NM_128161.1| Arabidopsis thaliana PDF1.2b AT2G26020 (PDF1.2b) mRNA, complete cds Length = 274 Score = 48.1 bits (24), Expect = 0.017 Identities = 24/24 (100%) Strand = Plus / Plus Query: 38 acaaagtagtaataatcatcatgg 61 |||||||||||||||||||||||| Sbjct: 12 acaaagtagtaataatcatcatgg 35
>gb|AC004747.3| Arabidopsis thaliana chromosome 2 clone T19L18 map B68, complete sequence Length = 87080 Score = 48.1 bits (24), Expect = 0.017 Identities = 24/24 (100%) Strand = Plus / Minus Query: 38 acaaagtagtaataatcatcatgg 61 |||||||||||||||||||||||| Sbjct: 55234 acaaagtagtaataatcatcatgg 55211
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 46.1 bits (23), Expect = 0.069 Identities = 26/27 (96%) Strand = Plus / Plus Query: 266 cggaggcggctccggcttgggttcggg 292 ||||||||||||||||||||| ||||| Sbjct: 3480480 cggaggcggctccggcttgggctcggg 3480506
>gb|AC163706.2| Gallus gallus BAC clone CH261-71A16 from chromosome w, complete sequence Length = 206206 Score = 46.1 bits (23), Expect = 0.069 Identities = 29/31 (93%) Strand = Plus / Plus Query: 77 gaaactaaaaagggatgatggaatacaagga 107 ||||||||| |||||||||||||||||||| Sbjct: 113780 gaaactaaactgggatgatggaatacaagga 113810
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 44.1 bits (22), Expect = 0.27 Identities = 28/30 (93%) Strand = Plus / Plus Query: 275 ctccggcttgggttcgggttcaggcttggg 304 |||||||||||||| ||| ||||||||||| Sbjct: 2710023 ctccggcttgggtttgggctcaggcttggg 2710052
>gb|AF377565.1| Tripsacum dactyloides clone T. anonymous genomic RFLP marker Csu1138 Length = 369 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 273 ggctccggcttgggttcgggttcaggcttgggctctggctt 313 ||||| |||||||| | ||| || ||||||||||||||||| Sbjct: 138 ggctctggcttgggcttgggctccggcttgggctctggctt 98
>gb|AC140074.2| Mus musculus BAC clone RP23-141A5 from chromosome 8, complete sequence Length = 190381 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 152163 cggctcgggctcgggttcgggttctggctcgggctccggct 152203
>gb|AY459322.1| Mus musculus apoptosis repressor interacting with CARD (Nol3) mRNA, complete cds Length = 983 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 750 cggctcgggctcgggttcgggttctggctcgggctccggct 710
>gb|AC124584.5| Mus musculus BAC clone RP23-127B8 from chromosome 8, complete sequence Length = 193083 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 113786 cggctcgggctcgggttcgggttctggctcgggctccggct 113826
>ref|NM_030152.2| Mus musculus nucleolar protein 3 (apoptosis repressor with CARD domain) (Nol3), mRNA Length = 2870 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 743 cggctcgggctcgggttcgggttctggctcgggctccggct 703
>emb|AL138776.10| Human DNA sequence from clone RP11-20H6 on chromosome 1q25.1-31.1 Contains the 3' end of the RGSL1 gene for regulator of G-protein signalling like 1, the RNASEL gene for ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) and a CpG island, complete sequence Length = 100549 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 96 ggaatacaaggaatgcaaaaa 116 ||||||||||||||||||||| Sbjct: 33257 ggaatacaaggaatgcaaaaa 33277
>gb|AC090480.11| Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP23-248L18, Complete Sequence, complete sequence Length = 231039 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 215031 cggctcgggctcgggttcgggttctggctcgggctccggct 215071
>gb|AY961377.1| Arabidopsis halleri putative plant defensin PDF1.2 mRNA, complete cds Length = 432 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 aagtagtaataatcatcatgg 61 ||||||||||||||||||||| Sbjct: 21 aagtagtaataatcatcatgg 41
>gb|AY961376.1| Arabidopsis halleri putative plant defensin PDF1.1 mRNA, complete cds Length = 431 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 aagtagtaataatcatcatgg 61 ||||||||||||||||||||| Sbjct: 23 aagtagtaataatcatcatgg 43
>dbj|AK079536.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230035L15 product:nucleolar protein 3 (apoptosis repressor with CARD domain) [Homo sapiens]., full insert sequence Length = 1620 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 774 cggctcgggctcgggttcgggttctggctcgggctccggct 734
>dbj|AK053846.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130314L04 product:apoptosis repressor with CARD domain [Homo sapiens], full insert sequence Length = 2870 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 743 cggctcgggctcgggttcgggttctggctcgggctccggct 703
>dbj|AK021023.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430311C09 product:apoptosis repressor with CARD domain [Homo sapiens], full insert sequence Length = 927 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 688 cggctcgggctcgggttcgggttctggctcgggctccggct 648
>gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198170 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 ttcaggcttgggctctggctt 313 ||||||||||||||||||||| Sbjct: 168340 ttcaggcttgggctctggctt 168360
>gb|BC027290.1| Mus musculus nucleolar protein 3 (apoptosis repressor with CARD domain), mRNA (cDNA clone MGC:27734 IMAGE:2647023), complete cds Length = 1022 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 769 cggctcgggctcgggttcgggttctggctcgggctccggct 729
>gb|BC053971.1| Mus musculus nucleolar protein 3 (apoptosis repressor with CARD domain), mRNA (cDNA clone IMAGE:1397304) Length = 960 Score = 42.1 bits (21), Expect = 1.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctctggct 312 |||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 714 cggctcgggctcgggttcgggttctggctcgggctccggct 674
>emb|AL732543.8| Mouse DNA sequence from clone RP23-13D22 on chromosome 4, complete sequence Length = 195272 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 gggatgatggaatacaaggaa 108 ||||||||||||||||||||| Sbjct: 77733 gggatgatggaatacaaggaa 77713
>ref|NM_123809.3| Arabidopsis thaliana PDF1.2 AT5G44420 (PDF1.2) mRNA, complete cds Length = 438 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 acaaagtagtaataatcatcatgg 61 ||||| |||||||||||||||||| Sbjct: 29 acaaaatagtaataatcatcatgg 52
>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete sequence Length = 210568 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 95 tggaatacaaggaatgcaaaaaag 118 |||||||||||| ||||||||||| Sbjct: 6876 tggaatacaaggcatgcaaaaaag 6853
>ref|XM_360938.1| Magnaporthe grisea 70-15 hypothetical protein (MG03481.4) partial mRNA Length = 2076 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ggttcgggttcaggcttggg 304 |||||||||||||||||||| Sbjct: 1358 ggttcgggttcaggcttggg 1339
>ref|NM_003632.1| Homo sapiens contactin associated protein 1 (CNTNAP1), mRNA Length = 5293 Score = 40.1 bits (20), Expect = 4.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctc 307 ||||||||||| ||| ||| |||| ||||||||||| Sbjct: 180 cggctccggctagggctcgagttctggcttgggctc 145
>ref|XM_760578.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0144) partial mRNA Length = 3657 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aaagtagtaataatcatcat 59 |||||||||||||||||||| Sbjct: 3006 aaagtagtaataatcatcat 2987
>ref|XM_949479.1| Theileria annulata strain Ankara hypothetical protein (TA19075) partial mRNA Length = 3639 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aaagtagtaataatcatcat 59 |||||||||||||||||||| Sbjct: 2991 aaagtagtaataatcatcat 2972
>gb|AC091204.3| Drosophila melanogaster 3L NOVECTOR RP98-27G13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185825 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 atggaatacaaggaatgcaaaaaa 117 |||||||||| ||||||||||||| Sbjct: 165497 atggaatacagggaatgcaaaaaa 165520
>gb|AY063779.1| Arabidopsis thaliana putative antifungal protein PDF1.2 (At5g44420) mRNA, complete cds Length = 454 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 acaaagtagtaataatcatcatgg 61 ||||| |||||||||||||||||| Sbjct: 29 acaaaatagtaataatcatcatgg 52
>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185790 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 atggaatacaaggaatgcaaaaaa 117 |||||||||| ||||||||||||| Sbjct: 182112 atggaatacagggaatgcaaaaaa 182089
>gb|AY961378.1| Arabidopsis halleri putative plant defensin PDF1.3 mRNA, complete cds Length = 421 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 acaaagtagtaataatcatcatgg 61 ||||||||||||||||||| |||| Sbjct: 13 acaaagtagtaataatcattatgg 36
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 ggtcgatctcctcctccttcggct 216 ||||||||||||||||||| |||| Sbjct: 8641318 ggtcgatctcctcctcctttggct 8641295
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tcctcctccttcggctgtca 220 |||||||||||||||||||| Sbjct: 301516 tcctcctccttcggctgtca 301497
>emb|BX005483.3| Zebrafish DNA sequence from clone CH211-286G12 in linkage group 23, complete sequence Length = 182479 Score = 40.1 bits (20), Expect = 4.2 Identities = 35/40 (87%) Strand = Plus / Plus Query: 273 ggctccggcttgggttcgggttcaggcttgggctctggct 312 ||||| |||| |||||||||||| |||| |||||| |||| Sbjct: 33139 ggctcgggctcgggttcgggttcgggctcgggctcgggct 33178
>gb|AE004965.1| Pseudomonas aeruginosa PAO1, section 526 of 529 of the complete genome Length = 10353 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ggcggctccggcttgggttc 289 |||||||||||||||||||| Sbjct: 8235 ggcggctccggcttgggttc 8254
>gb|AC073912.38| Homo sapiens 12 BAC RP11-989F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 211550 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 aatacaaggaatgcaaaaaagatg 121 ||||||||||||||||| |||||| Sbjct: 209378 aatacaaggaatgcaaagaagatg 209401
>gb|AC100793.8| Homo sapiens chromosome 17, clone CTD-3193K9, complete sequence Length = 134465 Score = 40.1 bits (20), Expect = 4.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctc 307 ||||||||||| ||| ||| |||| ||||||||||| Sbjct: 20565 cggctccggctagggctcgagttctggcttgggctc 20530
>dbj|AB017065.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16 Length = 61290 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 acaaagtagtaataatcatcatgg 61 ||||| |||||||||||||||||| Sbjct: 21015 acaaaatagtaataatcatcatgg 20992
>gb|U87223.1|HSU87223 Homo sapiens contactin associated protein (Caspr) mRNA, complete cds Length = 5293 Score = 40.1 bits (20), Expect = 4.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 272 cggctccggcttgggttcgggttcaggcttgggctc 307 ||||||||||| ||| ||| |||| ||||||||||| Sbjct: 180 cggctccggctagggctcgagttctggcttgggctc 145
>gb|AE003557.4| Drosophila melanogaster chromosome 3L, section 28 of 83 of the complete sequence Length = 287988 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 atggaatacaaggaatgcaaaaaa 117 |||||||||| ||||||||||||| Sbjct: 273298 atggaatacagggaatgcaaaaaa 273321
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tcctcctccttcggctgtca 220 |||||||||||||||||||| Sbjct: 301516 tcctcctccttcggctgtca 301497
>emb|AL731598.2|OSJN00248 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065B15, complete sequence Length = 150007 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 ggtcgatctcctcctccttcggct 216 ||||||||||||||||||| |||| Sbjct: 101761 ggtcgatctcctcctcctttggct 101738
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tcctcctccttcggctgtca 220 |||||||||||||||||||| Sbjct: 3477 tcctcctccttcggctgtca 3496
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tcctcctccttcggctgtca 220 |||||||||||||||||||| Sbjct: 8834 tcctcctccttcggctgtca 8815
>gb|U23764.1|PAU23764 Pseudomonas aeruginosa TonB (tonB) gene, complete cds Length = 1200 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ggcggctccggcttgggttc 289 |||||||||||||||||||| Sbjct: 593 ggcggctccggcttgggttc 574
>gb|AC166148.5| Cavia porcellus, clone Cavia porcellus-24948757J7, complete sequence Length = 40129 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 aaatgataattacaaagtagtaat 50 |||||||||||| ||||||||||| Sbjct: 36196 aaatgataattaaaaagtagtaat 36173 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,250,411 Number of Sequences: 3902068 Number of extensions: 3250411 Number of successful extensions: 65615 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65336 Number of HSP's gapped (non-prelim): 275 length of query: 321 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 299 effective length of database: 17,147,199,772 effective search space: 5127012731828 effective search space used: 5127012731828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
