ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet51a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A me... 31 0.90
2K10_DROME (P13468) DNA-binding protein K10 (Female sterile prote... 29 3.4
3COBL6_ARATH (O04500) COBRA-like protein 6 precursor 29 3.4
4CRK_XENLA (P87378) SH2/SH3 adaptor crk (Adapter molecule crk) (C... 28 5.9
5IF2_CHLPN (Q9Z8M1) Translation initiation factor IF-2 28 7.7
6FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein ... 27 10.0
7CRK_CHICK (Q04929) Proto-oncogene C-crk (P38) 27 10.0

>PHLA1_HUMAN (Q8WV24) Pleckstrin homology-like domain family A member 1 (T-cell|
           death-associated gene 51 protein) (Apoptosis-associated
           nuclear protein) (Proline- and histidine-rich protein)
           (Proline- and glutamine-rich protein) (PQ-rich protein)
          Length = 259

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 95  HPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQRRSIPPS*HGLKLKANTTHA 250
           HP P S P+  P+    H HP P+ +  P  Q  S P   HG +L  +T+++
Sbjct: 213 HPHPHSHPHSHPHP---HPHPHPHQIPHPHPQPHSQP---HGHRLLRSTSNS 258



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>K10_DROME (P13468) DNA-binding protein K10 (Female sterile protein K10)|
          Length = 463

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  KLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQRRSIPPS 211
           K +QHP P+     SP  Q   +HPSPN    P   ++  P S
Sbjct: 126 KQQQHPSPNQQQPPSPNQQ---QHPSPNQQQHPSPNQQQHPNS 165



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>COBL6_ARATH (O04500) COBRA-like protein 6 precursor|
          Length = 454

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 144 SVWVYGLQFGPESGPGCCLSLFAYYYGHFV 55
           +V VY  QF     P CC+SL A+YY + V
Sbjct: 217 AVCVYS-QFRSSPSPKCCVSLSAFYYQNIV 245



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>CRK_XENLA (P87378) SH2/SH3 adaptor crk (Adapter molecule crk) (CRK2)|
          Length = 296

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 80  NKLKQHPGPDSGPN*SPYTQTEHKHPSPNGLHRPDLQR 193
           N+   HP P  GP   PY Q     P PN  + P   R
Sbjct: 197 NQENSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIFAR 234



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>IF2_CHLPN (Q9Z8M1) Translation initiation factor IF-2|
          Length = 890

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 12  KSLISRHNAQQ*TNTQSARNNKQINLNNIQDLTPDQTEARIPKLNTSIRHLTGFTDRTFK 191
           K + S    +  T+    +NN++   N       +++ A  PK +   ++LT F DR+ K
Sbjct: 206 KPVASDKTGKPGTSEGGEQNNREKQFN-----PANRSPASGPKRDAGKKNLTDFRDRSKK 260

Query: 192 DDQSL 206
            D+SL
Sbjct: 261 SDESL 265



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>FREM2_MOUSE (Q6NVD0) FRAS1-related extracellular matrix protein 2 precursor (ECM3|
            homolog) (NV domain-containing protein 1)
          Length = 3160

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +3

Query: 117  QTEARIPKLNTSIRHLTGFTDRTFK------DDQSLHLDTDLNLKQTRHTPTI*WRSGDE 278
            +TE  +  ++T + H++    +  K        + LH+    +L+  +H     W SGDE
Sbjct: 838  ETELHVSDVDTDVTHISFTLTQAPKHGHMQISGRPLHVGGQFHLEDIKHGRISYWNSGDE 897

Query: 279  S 281
            S
Sbjct: 898  S 898



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>CRK_CHICK (Q04929) Proto-oncogene C-crk (P38)|
          Length = 305

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 80  NKLKQHPGPDSGPN*SPYTQTEHKHPSPN 166
           N+   HP P  GP   PY Q     P PN
Sbjct: 205 NQDSSHPQPLGGPEPGPYAQPSINTPLPN 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,533,314
Number of Sequences: 219361
Number of extensions: 938156
Number of successful extensions: 2165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2163
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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