ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet51a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, comple... 40 1.9
2emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chro... 40 1.9
3gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 38 7.3
4gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence 38 7.3
5gb|AC113280.12| Mus musculus chromosome 1, clone RP23-391E12, co... 38 7.3
6gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, com... 38 7.3
7dbj|AK051419.1| Mus musculus 12 days embryo spinal ganglion cDNA... 38 7.3
8gb|AE009511.1| Brucella melitensis 16M chromosome I, section 68 ... 38 7.3
9dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 38 7.3
10gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 38 7.3
11ref|XM_319428.2| Anopheles gambiae str. PEST ENSANGP00000014413 ... 38 7.3
12gb|AC104921.9| Mus musculus chromosome 7, clone RP23-474B13, com... 38 7.3
13emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,... 38 7.3
14gb|U01149.1|QUCSRC3 Coturnix coturnix c-src protein (c-src) gene... 38 7.3
15dbj|D89171.1| Schizosaccharomyces pombe mRNA, partial cds, clone... 38 7.3

>gb|AC098886.4| Mus musculus BAC clone RP23-122M21 from 4, complete sequence
          Length = 219825

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    cagagccacatgcaccacgg 142
              ||||||||||||||||||||
Sbjct: 121552 cagagccacatgcaccacgg 121533



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>emb|AL606907.9| Mouse DNA sequence from clone RP23-230F2 on chromosome 4, complete
              sequence
          Length = 208265

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    cagagccacatgcaccacgg 142
              ||||||||||||||||||||
Sbjct: 109991 cagagccacatgcaccacgg 109972



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>gb|AC151775.1| Ornithorhynchus anatinus chromosome UNK clone OABb-307A1, complete
              sequence
          Length = 195598

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 32     cttatacaccacagagcaa 50
              |||||||||||||||||||
Sbjct: 192783 cttatacaccacagagcaa 192801



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>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 132     atgcaccacggcatccacg 150
               |||||||||||||||||||
Sbjct: 1266407 atgcaccacggcatccacg 1266425



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>gb|AC113280.12| Mus musculus chromosome 1, clone RP23-391E12, complete sequence
          Length = 217982

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     tacaccacagagcaatagt 54
              |||||||||||||||||||
Sbjct: 110212 tacaccacagagcaatagt 110194



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>gb|AC020912.6| Homo sapiens chromosome 19 clone CTD-2583G20, complete sequence
          Length = 163225

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   agatacattagcagagcca 130
             |||||||||||||||||||
Sbjct: 12583 agatacattagcagagcca 12565



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>dbj|AK051419.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130047L09
            product:unclassifiable, full insert sequence
          Length = 3511

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   tgacactgaaacaggctac 102
            |||||||||||||||||||
Sbjct: 2257 tgacactgaaacaggctac 2239



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>gb|AE009511.1| Brucella melitensis 16M chromosome I, section 68 of 195 of the
            complete sequence
          Length = 8159

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 132  atgcaccacggcatccacg 150
            |||||||||||||||||||
Sbjct: 4404 atgcaccacggcatccacg 4386



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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 90      tgaaacaggctaccatcca 108
               |||||||||||||||||||
Sbjct: 2658411 tgaaacaggctaccatcca 2658393



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>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 132     atgcaccacggcatccacg 150
               |||||||||||||||||||
Sbjct: 1284373 atgcaccacggcatccacg 1284391



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>ref|XM_319428.2| Anopheles gambiae str. PEST ENSANGP00000014413
           (ENSANGG00000011924), partial mRNA
          Length = 1177

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  tttgacactgaaacaggct 100
           |||||||||||||||||||
Sbjct: 925 tttgacactgaaacaggct 943



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>gb|AC104921.9| Mus musculus chromosome 7, clone RP23-474B13, complete sequence
          Length = 182487

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     tgacactgaaacaggctac 102
              |||||||||||||||||||
Sbjct: 148572 tgacactgaaacaggctac 148590



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>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain
               2308
          Length = 2121359

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 132     atgcaccacggcatccacg 150
               |||||||||||||||||||
Sbjct: 1281523 atgcaccacggcatccacg 1281541



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>gb|U01149.1|QUCSRC3 Coturnix coturnix c-src protein (c-src) gene, complete cds
          Length = 2089

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 80   actttgacactgaaacagg 98
            |||||||||||||||||||
Sbjct: 1872 actttgacactgaaacagg 1854



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>dbj|D89171.1| Schizosaccharomyces pombe mRNA, partial cds, clone: SY 0720
          Length = 1198

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 113 gatacattagcagagccac 131
           |||||||||||||||||||
Sbjct: 603 gatacattagcagagccac 585


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 934,521
Number of Sequences: 3902068
Number of extensions: 934521
Number of successful extensions: 61215
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61161
Number of HSP's gapped (non-prelim): 54
length of query: 152
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 131
effective length of database: 17,151,101,840
effective search space: 2246794341040
effective search space used: 2246794341040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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