ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet50h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX mono... 84 1e-13
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.085
3dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.085
4dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.085
5dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.085
6dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.085
7dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.085
8dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.085
9gb|AY542959.1| Simian immunodeficiency virus gp41 (env) and nef ... 38 5.3
10gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, com... 38 5.3
11emb|CR450685.13| Zebrafish DNA sequence from clone DKEY-83K24 in... 38 5.3
12gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, c... 38 5.3
13emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 ... 38 5.3
14gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, co... 38 5.3
15gb|AF078842.1|AF078842 Homo sapiens HOTTL protein mRNA, complete... 38 5.3
16emb|AL590148.8| Zebrafish DNA sequence from clone RP71-30I22 in ... 38 5.3

>gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX monomethyl ester cyclase
            (Xantha-l) gene, complete cds
          Length = 2097

 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                          
Query: 70   caggtgagcacaggaagatgtatatcatgttaattaaccatggacc 115
            |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2097 caggtgagcacaggaagatgtagatcatgttaattaaccatggacc 2052



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.085
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 23      tgatgcagttcactgccactta 44
               ||||||||||||||||||||||
Sbjct: 9875448 tgatgcagttcactgccactta 9875427



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>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025D05
          Length = 145684

 Score = 44.1 bits (22), Expect = 0.085
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 23     tgatgcagttcactgccactta 44
              ||||||||||||||||||||||
Sbjct: 139698 tgatgcagttcactgccactta 139677



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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0003H10
          Length = 142418

 Score = 44.1 bits (22), Expect = 0.085
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 23    tgatgcagttcactgccactta 44
             ||||||||||||||||||||||
Sbjct: 11214 tgatgcagttcactgccactta 11193



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>dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014B03, full
            insert sequence
          Length = 1691

 Score = 44.1 bits (22), Expect = 0.085
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 23   tgatgcagttcactgccactta 44
            ||||||||||||||||||||||
Sbjct: 1483 tgatgcagttcactgccactta 1462



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>dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B09, full
           insert sequence
          Length = 618

 Score = 44.1 bits (22), Expect = 0.085
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 23  tgatgcagttcactgccactta 44
           ||||||||||||||||||||||
Sbjct: 558 tgatgcagttcactgccactta 537



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>dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F10, full
            insert sequence
          Length = 1944

 Score = 44.1 bits (22), Expect = 0.085
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 23   tgatgcagttcactgccactta 44
            ||||||||||||||||||||||
Sbjct: 1473 tgatgcagttcactgccactta 1452



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>dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E02, full
            insert sequence
          Length = 1533

 Score = 44.1 bits (22), Expect = 0.085
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 23   tgatgcagttcactgccactta 44
            ||||||||||||||||||||||
Sbjct: 1469 tgatgcagttcactgccactta 1448



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>gb|AY542959.1| Simian immunodeficiency virus gp41 (env) and nef protein (nef)
           genes, partial cds
          Length = 699

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 25  atgcagttcactgccactt 43
           |||||||||||||||||||
Sbjct: 227 atgcagttcactgccactt 209



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>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence
          Length = 158943

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    gatgtatatcatgttaatt 104
             |||||||||||||||||||
Sbjct: 75633 gatgtatatcatgttaatt 75615



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>emb|CR450685.13| Zebrafish DNA sequence from clone DKEY-83K24 in linkage group 8, complete
              sequence
          Length = 195473

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 88     tgtatatcatgttaattaa 106
              |||||||||||||||||||
Sbjct: 132177 tgtatatcatgttaattaa 132195



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>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence
          Length = 184010

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    gatgtatatcatgttaatt 104
             |||||||||||||||||||
Sbjct: 29335 gatgtatatcatgttaatt 29353



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>emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 in linkage group 25,
             complete sequence
          Length = 146063

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 93    atcatgttaattaaccatg 111
             |||||||||||||||||||
Sbjct: 15111 atcatgttaattaaccatg 15129



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>gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, complete sequence
          Length = 173602

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 68     tacaggtgagcacaggaag 86
              |||||||||||||||||||
Sbjct: 104486 tacaggtgagcacaggaag 104504



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>gb|AF078842.1|AF078842 Homo sapiens HOTTL protein mRNA, complete cds
          Length = 1684

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 10  ggaacacatgctctgatgc 28
           |||||||||||||||||||
Sbjct: 290 ggaacacatgctctgatgc 308



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>emb|AL590148.8| Zebrafish DNA sequence from clone RP71-30I22 in linkage group 8
             Contains part of a novel gene for a protein similar to
             human FLJ12550, the pim1 gene for pim-1 oncogene (proviral
             integration site 1), part of a novel gene for a protein
             similar to vertebrate UDP-galactose transporters, a novel
             gene for a protein similar to vertebrate caldesmon 1
             (CALD1) and a CpG island, complete sequence
          Length = 140984

 Score = 38.2 bits (19), Expect = 5.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 88    tgtatatcatgttaattaa 106
             |||||||||||||||||||
Sbjct: 81175 tgtatatcatgttaattaa 81193


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 997,524
Number of Sequences: 3902068
Number of extensions: 997524
Number of successful extensions: 68366
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68321
Number of HSP's gapped (non-prelim): 45
length of query: 115
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 94
effective length of database: 17,151,101,840
effective search space: 1612203572960
effective search space used: 1612203572960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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