| Clone Name | rbaet50h10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY887063.1| Hordeum vulgare aerobic Mg-protoporphyrin IX monomethyl ester cyclase (Xantha-l) gene, complete cds Length = 2097 Score = 83.8 bits (42), Expect = 1e-13 Identities = 45/46 (97%) Strand = Plus / Minus Query: 70 caggtgagcacaggaagatgtatatcatgttaattaaccatggacc 115 |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2097 caggtgagcacaggaagatgtagatcatgttaattaaccatggacc 2052
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.085 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tgatgcagttcactgccactta 44 |||||||||||||||||||||| Sbjct: 9875448 tgatgcagttcactgccactta 9875427
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 44.1 bits (22), Expect = 0.085 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tgatgcagttcactgccactta 44 |||||||||||||||||||||| Sbjct: 139698 tgatgcagttcactgccactta 139677
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 44.1 bits (22), Expect = 0.085 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tgatgcagttcactgccactta 44 |||||||||||||||||||||| Sbjct: 11214 tgatgcagttcactgccactta 11193
>dbj|AK069333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014B03, full insert sequence Length = 1691 Score = 44.1 bits (22), Expect = 0.085 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tgatgcagttcactgccactta 44 |||||||||||||||||||||| Sbjct: 1483 tgatgcagttcactgccactta 1462
>dbj|AK061646.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B09, full insert sequence Length = 618 Score = 44.1 bits (22), Expect = 0.085 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tgatgcagttcactgccactta 44 |||||||||||||||||||||| Sbjct: 558 tgatgcagttcactgccactta 537
>dbj|AK059435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F10, full insert sequence Length = 1944 Score = 44.1 bits (22), Expect = 0.085 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tgatgcagttcactgccactta 44 |||||||||||||||||||||| Sbjct: 1473 tgatgcagttcactgccactta 1452
>dbj|AK058287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E02, full insert sequence Length = 1533 Score = 44.1 bits (22), Expect = 0.085 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 tgatgcagttcactgccactta 44 |||||||||||||||||||||| Sbjct: 1469 tgatgcagttcactgccactta 1448
>gb|AY542959.1| Simian immunodeficiency virus gp41 (env) and nef protein (nef) genes, partial cds Length = 699 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 atgcagttcactgccactt 43 ||||||||||||||||||| Sbjct: 227 atgcagttcactgccactt 209
>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence Length = 158943 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 gatgtatatcatgttaatt 104 ||||||||||||||||||| Sbjct: 75633 gatgtatatcatgttaatt 75615
>emb|CR450685.13| Zebrafish DNA sequence from clone DKEY-83K24 in linkage group 8, complete sequence Length = 195473 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 tgtatatcatgttaattaa 106 ||||||||||||||||||| Sbjct: 132177 tgtatatcatgttaattaa 132195
>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence Length = 184010 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 gatgtatatcatgttaatt 104 ||||||||||||||||||| Sbjct: 29335 gatgtatatcatgttaatt 29353
>emb|CR382288.10| Zebrafish DNA sequence from clone CH211-234C14 in linkage group 25, complete sequence Length = 146063 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 atcatgttaattaaccatg 111 ||||||||||||||||||| Sbjct: 15111 atcatgttaattaaccatg 15129
>gb|AC090226.3| Homo sapiens chromosome 18, clone RP11-723D20, complete sequence Length = 173602 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 tacaggtgagcacaggaag 86 ||||||||||||||||||| Sbjct: 104486 tacaggtgagcacaggaag 104504
>gb|AF078842.1|AF078842 Homo sapiens HOTTL protein mRNA, complete cds Length = 1684 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 ggaacacatgctctgatgc 28 ||||||||||||||||||| Sbjct: 290 ggaacacatgctctgatgc 308
>emb|AL590148.8| Zebrafish DNA sequence from clone RP71-30I22 in linkage group 8 Contains part of a novel gene for a protein similar to human FLJ12550, the pim1 gene for pim-1 oncogene (proviral integration site 1), part of a novel gene for a protein similar to vertebrate UDP-galactose transporters, a novel gene for a protein similar to vertebrate caldesmon 1 (CALD1) and a CpG island, complete sequence Length = 140984 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 tgtatatcatgttaattaa 106 ||||||||||||||||||| Sbjct: 81175 tgtatatcatgttaattaa 81193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 997,524 Number of Sequences: 3902068 Number of extensions: 997524 Number of successful extensions: 68366 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68321 Number of HSP's gapped (non-prelim): 45 length of query: 115 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 94 effective length of database: 17,151,101,840 effective search space: 1612203572960 effective search space used: 1612203572960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)