>ref|XM_507601.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0033D24.25
            mRNA
          Length = 1524

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 65   atattacaccaacacaacttgcaagt 90
            ||||||||||||||||||||||||||
Sbjct: 1463 atattacaccaacacaacttgcaagt 1438

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 65       atattacaccaacacaacttgcaagt 90
                ||||||||||||||||||||||||||
Sbjct: 26763032 atattacaccaacacaacttgcaagt 26763007

>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0033D24
          Length = 186132

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 65     atattacaccaacacaacttgcaagt 90
              ||||||||||||||||||||||||||
Sbjct: 106374 atattacaccaacacaacttgcaagt 106349

>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665C04
          Length = 177054

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 65    atattacaccaacacaacttgcaagt 90
             ||||||||||||||||||||||||||
Sbjct: 25822 atattacaccaacacaacttgcaagt 25797

>dbj|AK068776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160K11, full
            insert sequence
          Length = 1524

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 65   atattacaccaacacaacttgcaagt 90
            ||||||||||||||||||||||||||
Sbjct: 1463 atattacaccaacacaacttgcaagt 1438

>gb|AC132427.4| Mus musculus BAC clone RP23-326N11 from chromosome 18, complete sequence
          Length = 192806

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     cccaaagagacacttcattg 30
              ||||||||||||||||||||
Sbjct: 105710 cccaaagagacacttcattg 105691

>gb|AC167438.2| Mus musculus BAC clone RP24-230L6 from chromosome 6, complete sequence
          Length = 147111

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    ccaacacaacttgcaagtg 91
             |||||||||||||||||||
Sbjct: 91074 ccaacacaacttgcaagtg 91056

>gb|AC133902.12| Mus musculus chromosome 10, clone RP24-538B17, complete sequence
          Length = 199604

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    cccaaagagacacttcatt 29
             |||||||||||||||||||
Sbjct: 61468 cccaaagagacacttcatt 61486

>emb|AL590381.4| Human DNA sequence from clone RP11-373O10 on chromosome 9, complete
            sequence
          Length = 182430

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 95   atattgagcaaaagctggcatgattac 121
            ||||||||||||||||| ||| |||||
Sbjct: 4002 atattgagcaaaagctgtcataattac 4028

>emb|AL445684.8| Human DNA sequence from clone RP11-45D15 on chromosome 9 Contains a CpG
              island, complete sequence
          Length = 140091

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                             
Query: 90     tgaggatattgagcaaaagctggcatgatta 120
              ||||||| |||||||  ||||||||||||||
Sbjct: 99983  tgaggattttgagcaggagctggcatgatta 100013

>emb|CR860073.1| Pongo pygmaeus mRNA; cDNA DKFZp469N1225 (from clone DKFZp469N1225)
          Length = 2523

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 2133 agtctcctgaagtcacaaa 2115

>emb|CR859447.1| Pongo pygmaeus mRNA; cDNA DKFZp469I0912 (from clone DKFZp469I0912)
          Length = 1554

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 1192 agtctcctgaagtcacaaa 1174

>emb|AJ400821.1|CRU400821 Capsella rubella ORF1, ORF2, ORF3, ORF4, ORF5 and ORF6 (partial)
          Length = 26241

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    acaacttgcaagtgaggat 96
             |||||||||||||||||||
Sbjct: 19688 acaacttgcaagtgaggat 19706

>emb|BX548000.6| Zebrafish DNA sequence from clone CH211-199M8 in linkage group 11,
              complete sequence
          Length = 216767

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     caacttgcaagtgaggata 97
              |||||||||||||||||||
Sbjct: 130604 caacttgcaagtgaggata 130586

>emb|BX649643.10| Zebrafish DNA sequence from clone CH211-125M10 in linkage group 22,
            complete sequence
          Length = 177325

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 101  agcaaaagctggcatgatt 119
            |||||||||||||||||||
Sbjct: 7451 agcaaaagctggcatgatt 7433

>ref|NM_182266.1| Caenorhabditis elegans F39E9.12 (F39E9.12) mRNA, complete cds
          Length = 1653

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 83  ttgcaagtgaggatattga 101
           |||||||||||||||||||
Sbjct: 173 ttgcaagtgaggatattga 191

>gb|AC148715.1| Macaca mulatta Major Histocompatibility Complex BAC MMU487N12, complete
              sequence
          Length = 153422

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 144258 agtctcctgaagtcacaaa 144276

>gb|AC148713.1| Macaca mulatta Major Histocompatibility Complex BAC MMU457F04,
            complete sequence
          Length = 149331

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 6215 agtctcctgaagtcacaaa 6233

>gb|AC148712.1| Macaca mulatta Major Histocompatibility Complex BAC MMU429H11, complete
              sequence
          Length = 155789

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 141744 agtctcctgaagtcacaaa 141762

>gb|AC148702.1| Macaca mulatta Major Histocompatibility Complex BAC MMU326H24, complete
              sequence
          Length = 202513

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 183917 agtctcctgaagtcacaaa 183935

>gb|AC148699.1| Macaca mulatta Major Histocompatibility Complex BAC MMU274L13, complete
              sequence
          Length = 210164

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 113767 agtctcctgaagtcacaaa 113785



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    agtctcctgaagtcacaaa 54
             |||||||||||||||||||
Sbjct: 46342 agtctcctgaagtcacaaa 46360

>gb|AC148686.1| Macaca mulatta Major Histocompatibility Complex BAC MMU192G09,
            complete sequence
          Length = 181166

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 4374 agtctcctgaagtcacaaa 4392

>gb|AC148681.1| Macaca mulatta Major Histocompatibility Complex MMU145B12, complete
              sequence
          Length = 176099

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 163046 agtctcctgaagtcacaaa 163064

>gb|AC148678.1| Macaca mulatta Major Histocompatibility Complex BAC MMU125A15, complete
              sequence
          Length = 172875

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 124983 agtctcctgaagtcacaaa 125001

>gb|AC148666.1| Macaca mulatta Major Histocompatibility Complex BAC MMU024N14,
            complete sequence
          Length = 174992

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 3303 agtctcctgaagtcacaaa 3321

>gb|AC148665.1| Macaca mulatta Major Histocompatibility Complex BAC MMU023M02, complete
             sequence
          Length = 182939

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    agtctcctgaagtcacaaa 54
             |||||||||||||||||||
Sbjct: 71137 agtctcctgaagtcacaaa 71155

>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      agtctcctgaagtcacaaa 54
               |||||||||||||||||||
Sbjct: 1087632 agtctcctgaagtcacaaa 1087614



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      agtctcctgaagtcacaaa 54
               |||||||||||||||||||
Sbjct: 1011377 agtctcctgaagtcacaaa 1011359



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 832176 agtctcctgaagtcacaaa 832158



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 610619 agtctcctgaagtcacaaa 610601



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 36     agtctcctgaagtcacaaa 54
              |||||||||||||||||||
Sbjct: 335778 agtctcctgaagtcacaaa 335760

>gb|AC019058.4|AC019058 Homo sapiens BAC clone RP11-125B15 from Y, complete sequence
          Length = 95691

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    aaagagacacttcattgta 32
             |||||||||||||||||||
Sbjct: 72655 aaagagacacttcattgta 72673

>gb|AF157403.1|AF157403 Macaca mulatta MHC class I heavy chain antigen (Mamu-B) mRNA,
            Mamu-B*0902 allele, complete cds
          Length = 1390

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 1168 agtctcctgaagtcacaaa 1150

>dbj|AB128859.1| Macaca mulatta Mamu-B18 gene for major histocompatibility complex,
            class I, B, complete cds
          Length = 3777

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 3429 agtctcctgaagtcacaaa 3411

>dbj|AB128858.1| Macaca mulatta Mamu-B17 gene for major histocompatibility complex,
            class I, B, complete cds
          Length = 3771

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 3423 agtctcctgaagtcacaaa 3405

>dbj|AB128855.1| Macaca mulatta Mamu-B14 gene for major histocompatibility complex,
            class I, B, complete cds
          Length = 3669

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 3431 agtctcctgaagtcacaaa 3413

>dbj|AB128851.1| Macaca mulatta Mamu-B10 pseudogene
          Length = 3424

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 3422 agtctcctgaagtcacaaa 3404

>dbj|AB128843.1| Macaca mulatta Mamu-B2 gene for major histocompatibility complex,
            class I, B, complete cds
          Length = 3772

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   agtctcctgaagtcacaaa 54
            |||||||||||||||||||
Sbjct: 3425 agtctcctgaagtcacaaa 3407

>gb|AC117205.3| Mus musculus BAC clone RP23-257K20 from 10, complete sequence
          Length = 177430

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    cccaaagagacacttcatt 29
             |||||||||||||||||||
Sbjct: 12341 cccaaagagacacttcatt 12323

>gb|AF024501.2| Caenorhabditis elegans cosmid F39E9, complete sequence
          Length = 36471

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    ttgcaagtgaggatattga 101
             |||||||||||||||||||
Sbjct: 14694 ttgcaagtgaggatattga 14712

>emb|AL732399.11| Mouse DNA sequence from clone RP23-311A22 on chromosome X, complete
             sequence
          Length = 198033

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 47    gtcacaaacatcactgccatatt 69
             |||||||| ||||||||||||||
Sbjct: 62843 gtcacaaatatcactgccatatt 62865


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,029,960
Number of Sequences: 3902068
Number of extensions: 1029960
Number of successful extensions: 69404
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69317
Number of HSP's gapped (non-prelim): 87
length of query: 138
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 117
effective length of database: 17,151,101,840
effective search space: 2006678915280
effective search space used: 2006678915280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)