ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet50e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Canc... 42 0.59
2gb|AC115970.8| Mus musculus chromosome 10, clone RP24-77I13, com... 42 0.59
3emb|AL929157.21| Mouse DNA sequence from clone RP23-94K14 on chr... 40 2.3
4gb|AC156641.2| Mus musculus BAC clone RP23-204J8 from chromosome... 40 2.3
5gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 2.3
6gb|AC009952.4|AC009952 Homo sapiens BAC clone RP11-175I4 from Y,... 40 2.3
7gb|AC155250.1| Mus musculus BAC clone RP24-228F21 from 9, comple... 40 2.3
8ref|NM_001015930.2| Xenopus tropicalis hypothetical protein LOC5... 38 9.2
9gb|AC111129.12| Mus musculus chromosome 5, clone RP23-339H11, co... 38 9.2
10gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 38 9.2
11gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 38 9.2
12gb|AC183987.3| Pan troglodytes BAC clone CH251-265I5 from chromo... 38 9.2
13ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, ... 38 9.2
14gb|AC073089.5| Homo sapiens BAC clone RP11-324F21 from 7, comple... 38 9.2
15gb|AC147144.2| Pan troglodytes BAC clone CH251-278J22 from Y, co... 38 9.2
16gb|AC003977.1|HUAC003977 Homo sapiens Chromosome 16 BAC clone CI... 38 9.2
17gb|AC098740.3| Mus musculus BAC clone RP23-122H3 from 3, complet... 38 9.2
18gb|AC146141.2| Pan troglodytes BAC clone RP43-3A23 from 7, compl... 38 9.2
19gb|AC146218.2| Pan troglodytes BAC clone CH251-267E2 from Y, com... 38 9.2
20gb|AC146341.10| Medicago truncatula clone mth2-10g1, complete se... 38 9.2
21emb|AL512427.10| Human DNA sequence from clone RP11-325M4 on chr... 38 9.2
22emb|AL512323.8| Human DNA sequence from clone RP13-445B20 on chr... 38 9.2
23emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chro... 38 9.2
24emb|AL360230.20| Human DNA sequence from clone RP11-379I13 on ch... 38 9.2
25emb|AL391277.16| Human DNA sequence from clone RP11-357C3 on chr... 38 9.2
26emb|AL390237.9| Human DNA sequence from clone RP11-278J20 on chr... 38 9.2
27emb|AL356265.10| Human DNA sequence from clone RP13-83C14 on chr... 38 9.2
28emb|AL355382.6| Human DNA sequence from clone RP11-408C8 on chro... 38 9.2
29emb|AL353576.18| Human DNA sequence from clone RP11-335J9 on chr... 38 9.2
30emb|AL022312.7|HS1104E15 Human DNA sequence from clone RP5-1104E... 38 9.2
31emb|BX957221.1| Methanococcus maripaludis S2 complete genome; se... 38 9.2
32emb|CR354536.8| Zebrafish DNA sequence from clone DKEY-101K8 in ... 38 9.2
33gb|AC121248.2| Homo sapiens chromosome 3 clone RP11-64C1, comple... 38 9.2
34gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, com... 38 9.2
35dbj|BS000660.1| Pan troglodytes chromosome Y clone:PTBY-005M17, ... 38 9.2
36dbj|BS000535.1| Pan troglodytes chromosome Y clone:PTB-096E06, c... 38 9.2
37gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 38 9.2
38gb|AC106704.7| Homo sapiens 3 BAC RP11-185F22 (Roswell Park Canc... 38 9.2
39gb|AC013650.8| Homo sapiens chromosome 8, clone RP11-24L2, compl... 38 9.2
40gb|AC096566.2| Homo sapiens BAC clone RP11-292B1 from 4, complet... 38 9.2
41gb|AC024339.11| Homo sapiens chromosome 10, clone RP11-281O24, c... 38 9.2
42dbj|AK163200.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 38 9.2
43gb|AC090814.2| Homo sapiens chromosome 8, clone RP11-1152K2, com... 38 9.2
44ref|NM_001016750.2| Xenopus tropicalis hypothetical protein LOC5... 38 9.2
45gb|AC098852.2| Homo sapiens BAC clone RP11-123E11 from 4, comple... 38 9.2
46gb|BC092556.1| Xenopus tropicalis hypothetical protein LOC549504... 38 9.2
47gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Canc... 38 9.2
48gb|AC012172.7| Homo sapiens chromosome 16 clone RP11-148F12, com... 38 9.2
49gb|AC108868.4| Homo sapiens BAC clone RP11-448J14 from 2, comple... 38 9.2
50gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, comp... 38 9.2
51gb|AC021107.3|AC021107 Homo sapiens BAC clone RP11-178M5 from Y,... 38 9.2
52gb|AC138305.2| Homo sapiens chromosome 16 clone RP11-2K6, comple... 38 9.2
53gb|AC090244.17| Homo sapiens chromosome 18, clone RP11-758N17, c... 38 9.2
54gb|AC009306.5| Homo sapiens BAC clone RP11-290K24 from 2, comple... 38 9.2
55emb|CR926378.2| Xenopus tropicalis finished cDNA, clone TGas128m17 38 9.2
56emb|AL133247.1|CNS01DUK BAC sequence from the SPG4 candidate reg... 38 9.2
57emb|AJ430034.1|HSA430034 Homo sapiens partial MUC4 gene for muci... 38 9.2
58gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 38 9.2
59emb|BX000526.8| Zebrafish DNA sequence from clone BUSM1-87D10 in... 38 9.2
60gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, comple... 38 9.2 
>gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190336

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   acacacccaggacagtacatt 185
             |||||||||||||||||||||
Sbjct: 22965 acacacccaggacagtacatt 22945
to top
>gb|AC115970.8| Mus musculus chromosome 10, clone RP24-77I13, complete sequence
          Length = 170563

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 165    acacacccaggacagtacatt 185
              |||||||||||||||||||||
Sbjct: 119474 acacacccaggacagtacatt 119454
to top
>emb|AL929157.21| Mouse DNA sequence from clone RP23-94K14 on chromosome 2, complete
             sequence
          Length = 127383

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 148   tcagtgcactcatacagacacacc 171
             ||||||||| ||||||||||||||
Sbjct: 98551 tcagtgcacacatacagacacacc 98528
to top
>gb|AC156641.2| Mus musculus BAC clone RP23-204J8 from chromosome 9, complete
            sequence
          Length = 219981

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  cactcatacagacacaccca 173
            ||||||||||||||||||||
Sbjct: 8284 cactcatacagacacaccca 8265
to top
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     cgagacgaaaaacccagaga 141
               ||||||||||||||||||||
Sbjct: 3865784 cgagacgaaaaacccagaga 3865803
to top
>gb|AC009952.4|AC009952 Homo sapiens BAC clone RP11-175I4 from Y, complete sequence
          Length = 148058

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 153   gcactcatacagacacacccagga 176
             ||||||| ||||||||||||||||
Sbjct: 48489 gcactcacacagacacacccagga 48512
to top
>gb|AC155250.1| Mus musculus BAC clone RP24-228F21 from 9, complete sequence
          Length = 166760

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   cactcatacagacacaccca 173
             ||||||||||||||||||||
Sbjct: 11977 cactcatacagacacaccca 11996
to top
>ref|NM_001015930.2| Xenopus tropicalis hypothetical protein LOC548684 (LOC548684), mRNA
          Length = 1744

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 139 agatccatgtcagtgcact 157
           |||||||||||||||||||
Sbjct: 350 agatccatgtcagtgcact 332
to top
>gb|AC111129.12| Mus musculus chromosome 5, clone RP23-339H11, complete sequence
          Length = 196458

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 128    gaaaaacccagagatccatgtca 150
              |||||||||||||||| ||||||
Sbjct: 134562 gaaaaacccagagatctatgtca 134584
to top
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 38      acttccagtccaataatataagt 60
               ||||||| |||||||||||||||
Sbjct: 1091550 acttccattccaataatataagt 1091528
to top
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 38      acttccagtccaataatataagt 60
               ||||||| |||||||||||||||
Sbjct: 1091442 acttccattccaataatataagt 1091420
to top
>gb|AC183987.3| Pan troglodytes BAC clone CH251-265I5 from chromosome 6, complete
              sequence
          Length = 162913

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 156    ctcatacagacacacccag 174
              |||||||||||||||||||
Sbjct: 100803 ctcatacagacacacccag 100821
to top
>ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, centromeric (IR2@) on
              chromosome Y
          Length = 389013

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 154    cactcatacagacacacccagga 176
              |||||| ||||||||||||||||
Sbjct: 372673 cactcacacagacacacccagga 372651
to top
>gb|AC073089.5| Homo sapiens BAC clone RP11-324F21 from 7, complete sequence
          Length = 171788

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 158    catacagacacacccagga 176
              |||||||||||||||||||
Sbjct: 151245 catacagacacacccagga 151263
to top
>gb|AC147144.2| Pan troglodytes BAC clone CH251-278J22 from Y, complete sequence
          Length = 178957

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 161    acagacacacccaggacag 179
              |||||||||||||||||||
Sbjct: 170163 acagacacacccaggacag 170181
to top
>gb|AC003977.1|HUAC003977 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-542B9, complete
             sequence
          Length = 130491

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 154   cactcatacagacacacccagga 176
             |||||| ||||||||||||||||
Sbjct: 58040 cactcacacagacacacccagga 58062
to top
>gb|AC098740.3| Mus musculus BAC clone RP23-122H3 from 3, complete sequence
          Length = 219346

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 152    tgcactcatacagacacac 170
              |||||||||||||||||||
Sbjct: 139853 tgcactcatacagacacac 139835



 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 152    tgcactcatacagacacac 170
              |||||||||||||||||||
Sbjct: 139741 tgcactcatacagacacac 139723
to top
>gb|AC146141.2| Pan troglodytes BAC clone RP43-3A23 from 7, complete sequence
          Length = 182547

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 154  cactcatacagacacacccagga 176
            |||||| ||||||||||||||||
Sbjct: 3348 cactcacacagacacacccagga 3370
to top
>gb|AC146218.2| Pan troglodytes BAC clone CH251-267E2 from Y, complete sequence
          Length = 203014

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 161    acagacacacccaggacag 179
              |||||||||||||||||||
Sbjct: 201634 acagacacacccaggacag 201616
to top
>gb|AC146341.10| Medicago truncatula clone mth2-10g1, complete sequence
          Length = 147669

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 151    gtgcactcatacagacaca 169
              |||||||||||||||||||
Sbjct: 120059 gtgcactcatacagacaca 120041
to top
>emb|AL512427.10| Human DNA sequence from clone RP11-325M4 on chromosome 6 Contains a
             retinoblastoma binding protein 4 (RBBP4) pseudogene,
             complete sequence
          Length = 201657

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 156   ctcatacagacacacccag 174
             |||||||||||||||||||
Sbjct: 82581 ctcatacagacacacccag 82563
to top
>emb|AL512323.8| Human DNA sequence from clone RP13-445B20 on chromosome 6, complete
             sequence
          Length = 205043

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 158   catacagacacacccagga 176
             |||||||||||||||||||
Sbjct: 49250 catacagacacacccagga 49232
to top
>emb|AL390723.21| Human DNA sequence from clone RP11-19G1 on chromosome 9 Contains part
             of a variant of the PTPRD gene for protein tyrosine
             phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
             complete sequence
          Length = 94643

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 158   catacagacacacccagga 176
             |||||||||||||||||||
Sbjct: 21488 catacagacacacccagga 21470
to top
>emb|AL360230.20| Human DNA sequence from clone RP11-379I13 on chromosome 10 Contains the
              PTER gene for phosphotriesterase related, the 3' end of the
              gene for a novel protein possible ortholog of mouse
              C1q-like protein (gliacolin) and a CpG island, complete
              sequence
          Length = 162599

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 131    aaacccagagatccatgtcagtg 153
              |||| ||||||||||||||||||
Sbjct: 161491 aaactcagagatccatgtcagtg 161469
to top
>emb|AL391277.16| Human DNA sequence from clone RP11-357C3 on chromosome X, complete
              sequence
          Length = 194456

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 158    catacagacacacccagga 176
              |||||||||||||||||||
Sbjct: 142077 catacagacacacccagga 142095
to top
>emb|AL390237.9| Human DNA sequence from clone RP11-278J20 on chromosome 6 Contains a
             retinoblastoma binding protein 4 (RBBP4) pseudogene and a
             KIAA0797 pseudogene, complete sequence
          Length = 140120

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 156   ctcatacagacacacccag 174
             |||||||||||||||||||
Sbjct: 57183 ctcatacagacacacccag 57165
to top
>emb|AL356265.10| Human DNA sequence from clone RP13-83C14 on chromosome X Contains a YWHA
              tyrosine 3-monooxygenase/tryptophan 5-monooxygenase
              activation protein pseudogene and a keratin 8 (KRT8)
              pseudogene, complete sequence
          Length = 165609

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 154    cactcatacagacacacccagga 176
              |||||| ||||||||||||||||
Sbjct: 128456 cactcacacagacacacccagga 128434
to top
>emb|AL355382.6| Human DNA sequence from clone RP11-408C8 on chromosome 6, complete
             sequence
          Length = 141756

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 154   cactcatacagacacacccagga 176
             |||||| ||||||||||||||||
Sbjct: 57918 cactcacacagacacacccagga 57896
to top
>emb|AL353576.18| Human DNA sequence from clone RP11-335J9 on chromosome 10 Contains
           the 5' end of the gene for a novel protein possible
           ortholog of mouse C1q-like protein (gliacolin) and a CpG
           island, complete sequence
          Length = 52065

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 131 aaacccagagatccatgtcagtg 153
           |||| ||||||||||||||||||
Sbjct: 892 aaactcagagatccatgtcagtg 870
to top
>emb|AL022312.7|HS1104E15 Human DNA sequence from clone RP5-1104E15 on chromosome 22q12.3-13.1
              Contains the MGAT3 gene for mannosyl
              (beta-1,4-)-glycoprotein
              beta-1,4-N-acetylglucosaminyltransferase, the gene for a
              predicted protein, the ATF4 gene for activating
              transcription factor 4 (tax-responsive enhancer element
              B67) and the 5' end of the CACNA1I gene for
              voltage-dependent calcium channel, alpha 1I subunit.
              Contains ESTs, STSs, GSSs and five putative CpG islands,
              complete sequence
          Length = 112460

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 152    tgcactcatacagacacac 170
              |||||||||||||||||||
Sbjct: 104958 tgcactcatacagacacac 104940
to top
>emb|BX957221.1| Methanococcus maripaludis S2 complete genome; segment 3/5
          Length = 348230

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      tgcaagtgcatatccaatc 20
              |||||||||||||||||||
Sbjct: 167818 tgcaagtgcatatccaatc 167800
to top
>emb|CR354536.8| Zebrafish DNA sequence from clone DKEY-101K8 in linkage group 17,
             complete sequence
          Length = 157228

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 167   acacccaggacagtacatt 185
             |||||||||||||||||||
Sbjct: 88883 acacccaggacagtacatt 88901
to top
>gb|AC121248.2| Homo sapiens chromosome 3 clone RP11-64C1, complete sequence
          Length = 185845

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 154    cactcatacagacacacccagga 176
              |||||| ||||||||||||||||
Sbjct: 112976 cactcacacagacacacccagga 112954
to top
>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence
          Length = 152722

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 158    catacagacacacccagga 176
              |||||||||||||||||||
Sbjct: 107245 catacagacacacccagga 107227
to top
>dbj|BS000660.1| Pan troglodytes chromosome Y clone:PTBY-005M17, complete sequences
          Length = 93004

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 161   acagacacacccaggacag 179
             |||||||||||||||||||
Sbjct: 74926 acagacacacccaggacag 74944
to top
>dbj|BS000535.1| Pan troglodytes chromosome Y clone:PTB-096E06, complete sequences
          Length = 198405

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 161    acagacacacccaggacag 179
              |||||||||||||||||||
Sbjct: 190954 acagacacacccaggacag 190936
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 161      acagacacacccaggacag 179
                |||||||||||||||||||
Sbjct: 19477223 acagacacacccaggacag 19477205
to top
>gb|AC106704.7| Homo sapiens 3 BAC RP11-185F22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39294

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 154   cactcatacagacacacccagga 176
             |||||| ||||||||||||||||
Sbjct: 26197 cactcacacagacacacccagga 26175
to top
>gb|AC013650.8| Homo sapiens chromosome 8, clone RP11-24L2, complete sequence
          Length = 147242

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 154   cactcatacagacacacccagga 176
             |||||| ||||||||||||||||
Sbjct: 60013 cactcacacagacacacccagga 60035
to top
>gb|AC096566.2| Homo sapiens BAC clone RP11-292B1 from 4, complete sequence
          Length = 101931

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 158   catacagacacacccagga 176
             |||||||||||||||||||
Sbjct: 21106 catacagacacacccagga 21088
to top
>gb|AC024339.11| Homo sapiens chromosome 10, clone RP11-281O24, complete sequence
          Length = 195191

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 131  aaacccagagatccatgtcagtg 153
            |||| ||||||||||||||||||
Sbjct: 8727 aaactcagagatccatgtcagtg 8749
to top
>dbj|AK163200.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730086N16
            product:unclassifiable, full insert sequence
          Length = 2268

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 128  gaaaaacccagagatccatgtca 150
            |||||||||||||||| ||||||
Sbjct: 1923 gaaaaacccagagatctatgtca 1945
to top
>gb|AC090814.2| Homo sapiens chromosome 8, clone RP11-1152K2, complete sequence
          Length = 142938

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 154   cactcatacagacacacccagga 176
             |||||| ||||||||||||||||
Sbjct: 30130 cactcacacagacacacccagga 30108
to top
>ref|NM_001016750.2| Xenopus tropicalis hypothetical protein LOC549504 (LOC549504), mRNA
          Length = 3459

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 139  agatccatgtcagtgcact 157
            |||||||||||||||||||
Sbjct: 2143 agatccatgtcagtgcact 2125
to top
>gb|AC098852.2| Homo sapiens BAC clone RP11-123E11 from 4, complete sequence
          Length = 193927

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 154    cactcatacagacacacccagga 176
              |||||| ||||||||||||||||
Sbjct: 153269 cactcacacagacacacccagga 153247
to top
>gb|BC092556.1| Xenopus tropicalis hypothetical protein LOC549504, mRNA (cDNA clone
            MGC:108440 IMAGE:7025165), complete cds
          Length = 3459

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 139  agatccatgtcagtgcact 157
            |||||||||||||||||||
Sbjct: 2143 agatccatgtcagtgcact 2125
to top
>gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 174097

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 161   acagacacacccaggacag 179
             |||||||||||||||||||
Sbjct: 69170 acagacacacccaggacag 69152
to top
>gb|AC012172.7| Homo sapiens chromosome 16 clone RP11-148F12, complete sequence
          Length = 136803

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 154   cactcatacagacacacccagga 176
             |||||| ||||||||||||||||
Sbjct: 19076 cactcacacagacacacccagga 19054
to top
>gb|AC108868.4| Homo sapiens BAC clone RP11-448J14 from 2, complete sequence
          Length = 109290

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 154   cactcatacagacacacccagga 176
             ||||| |||||||||||||||||
Sbjct: 42775 cactcttacagacacacccagga 42797
to top
>gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, complete sequence
          Length = 160358

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 152    tgcactcatacagacacac 170
              |||||||||||||||||||
Sbjct: 120685 tgcactcatacagacacac 120667
to top
>gb|AC021107.3|AC021107 Homo sapiens BAC clone RP11-178M5 from Y, complete sequence
          Length = 160601

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 154    cactcatacagacacacccagga 176
              |||||| ||||||||||||||||
Sbjct: 104392 cactcacacagacacacccagga 104370
to top
>gb|AC138305.2| Homo sapiens chromosome 16 clone RP11-2K6, complete sequence
          Length = 173695

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 154   cactcatacagacacacccagga 176
             |||||| ||||||||||||||||
Sbjct: 99831 cactcacacagacacacccagga 99853
to top
>gb|AC090244.17| Homo sapiens chromosome 18, clone RP11-758N17, complete sequence
          Length = 169144

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 154   cactcatacagacacacccagga 176
             ||||| |||||||||||||||||
Sbjct: 23763 cactcttacagacacacccagga 23785
to top
>gb|AC009306.5| Homo sapiens BAC clone RP11-290K24 from 2, complete sequence
          Length = 176602

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 154   cactcatacagacacacccagga 176
             |||||| ||||||||||||||||
Sbjct: 92462 cactcacacagacacacccagga 92484
to top
>emb|CR926378.2| Xenopus tropicalis finished cDNA, clone TGas128m17
          Length = 1744

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 139 agatccatgtcagtgcact 157
           |||||||||||||||||||
Sbjct: 350 agatccatgtcagtgcact 332
to top
>emb|AL133247.1|CNS01DUK BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 11B22 of
              library CITB_978_SKB from chromosome 2 of Homo sapiens
              (Human)
          Length = 189316

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 154    cactcatacagacacacccagga 176
              |||||| ||||||||||||||||
Sbjct: 179797 cactcacacagacacacccagga 179775
to top
>emb|AJ430034.1|HSA430034 Homo sapiens partial MUC4 gene for mucin 4, exons 5-25
          Length = 25773

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 161   acagacacacccaggacag 179
             |||||||||||||||||||
Sbjct: 15594 acagacacacccaggacag 15576
to top
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 38      acttccagtccaataatataagt 60
               ||||||| |||||||||||||||
Sbjct: 1091550 acttccattccaataatataagt 1091528
to top
>emb|BX000526.8| Zebrafish DNA sequence from clone BUSM1-87D10 in linkage group 14,
             complete sequence
          Length = 94928

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 167   acacccaggacagtacatt 185
             |||||||||||||||||||
Sbjct: 73886 acacccaggacagtacatt 73868
to top
>gb|AC135015.3| Mus musculus BAC clone RP24-227L14 from 8, complete sequence
          Length = 169193

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 155   actcatacagacacaccca 173
             |||||||||||||||||||
Sbjct: 63687 actcatacagacacaccca 63705


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,216,597
Number of Sequences: 3902068
Number of extensions: 1216597
Number of successful extensions: 100324
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100107
Number of HSP's gapped (non-prelim): 217
length of query: 187
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 165
effective length of database: 17,147,199,772
effective search space: 2829287962380
effective search space used: 2829287962380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top