ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet50d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FBN3_HUMAN (Q75N90) Fibrillin-3 precursor 30 1.8
2CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precur... 28 9.0

>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 113  YSPEPRQRTCM*SHQCSVVV*YCSLLCKSSK 21
            Y+P+    TC+   +CS V   C+ LCK++K
Sbjct: 2394 YTPDATATTCLDMDECSQVPKPCTFLCKNTK 2424



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>CRIM1_HUMAN (Q9NZV1) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)|
           (Cysteine-rich repeat-containing protein S52)
          Length = 1036

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 82  CNLISAQLLCSTARCCANP 26
           CN+I+ +  C+T R C+NP
Sbjct: 133 CNIINGKCECNTIRTCSNP 151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,548,723
Number of Sequences: 219361
Number of extensions: 267452
Number of successful extensions: 545
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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