ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet50c12 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 79.3 bits (194), Expect = 2e-15 Identities = 37/38 (97%), Positives = 38/38 (100%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 134 TGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 292 TGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 77.4 bits (189), Expect = 9e-15 Identities = 35/38 (92%), Positives = 37/38 (97%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 134 TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 296 TGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 76.3 bits (186), Expect = 2e-14 Identities = 34/37 (91%), Positives = 37/37 (100%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 293 TGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 75.9 bits (185), Expect = 3e-14 Identities = 34/37 (91%), Positives = 36/37 (97%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 296 TGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 75.9 bits (185), Expect = 3e-14 Identities = 34/37 (91%), Positives = 36/37 (97%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 293 TGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 73.9 bits (180), Expect = 1e-13 Identities = 34/37 (91%), Positives = 35/37 (94%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 296 TGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 73.2 bits (178), Expect = 2e-13 Identities = 33/37 (89%), Positives = 36/37 (97%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 294 TGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 73.2 bits (178), Expect = 2e-13 Identities = 33/37 (89%), Positives = 35/37 (94%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 295 TGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 71.6 bits (174), Expect = 5e-13 Identities = 36/39 (92%), Positives = 37/39 (94%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 131 TGEVIGVFESVQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 289 TGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 67.8 bits (164), Expect = 7e-12 Identities = 28/37 (75%), Positives = 34/37 (91%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 255 TGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 67.0 bits (162), Expect = 1e-11 Identities = 28/36 (77%), Positives = 32/36 (88%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 140 TGE+ GVFES+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 299 TGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 66.2 bits (160), Expect = 2e-11 Identities = 28/36 (77%), Positives = 32/36 (88%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 140 TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 256 TGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 57.8 bits (138), Expect = 7e-09 Identities = 23/39 (58%), Positives = 34/39 (87%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 131 TGE+ G+FES QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 235 TGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 56.2 bits (134), Expect = 2e-08 Identities = 24/37 (64%), Positives = 32/37 (86%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 +GE+ G FES QPSDTDLGA PK+VKI+G++YA++E Sbjct: 237 SGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 55.8 bits (133), Expect = 3e-08 Identities = 24/36 (66%), Positives = 32/36 (88%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 140 TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 236 TGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/37 (62%), Positives = 28/37 (75%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/37 (62%), Positives = 28/37 (75%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGE+ G FES Q SD D+GA P +VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 48.9 bits (115), Expect = 3e-06 Identities = 21/37 (56%), Positives = 28/37 (75%) Frame = -3 Query: 247 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 137 TGEV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 237 TGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -3 Query: 214 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 83 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 214 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 89 QP + KD+K++G W +Q + N S E K LI C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 28.1 bits (61), Expect = 6.3 Identities = 17/67 (25%), Positives = 30/67 (44%) Frame = +3 Query: 30 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 209 Y H S ++ PP P + Q+M+ TS+ ++ PW +S A+ P + S Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTSA 529 Query: 210 GCTLSKT 230 + S + Sbjct: 530 SSSSSSS 536
>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)| Length = 984 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +2 Query: 32 HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 172 H + +D +S Y DEY FC+ +L ++P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 8.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 41 THCCLDSFLSTDQPTYACTKDEYL 112 T C D L QP Y+C +D+Y+ Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203
>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Diph Length = 416 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 19 FILDTHTNTLLPRFFPLHRPT 81 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 19 FILDTHTNTLLPRFFPLHRPT 81 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 19 FILDTHTNTLLPRFFPLHRPT 81 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II alpha) (1-phosphatidylinositol-4-phosphate 5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha) (PIP5KII-alpha Length = 405 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 19 FILDTHTNTLLPRFFPLHRPT 81 FI++ H NTLLP+F ++R T Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184
>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.7 bits (60), Expect = 8.2 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 62 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 181 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,025,981 Number of Sequences: 219361 Number of extensions: 585353 Number of successful extensions: 1874 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 1850 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1873 length of database: 80,573,946 effective HSP length: 58 effective length of database: 67,851,008 effective search space used: 1628424192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
