>emb|X66428.1|HVPSANMR H.vulgare mRNA PsaN for photosystem I subunit N
          Length = 665

 Score =  464 bits (234), Expect = e-128
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 36  ggatatatgcaggtttccactagtgcaattacaggtgaaaaacaggattccacttgatga 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggatatatgcaggtttccactagtgcaattacaggtgaaaaacaggattccacttgatga 593

                                                                       
Query: 96  taaaattacagagacgatgacttcacagccgaaacacttgtgcagtttggacatttaggt 155
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 592 taaaattacagagacgatgacttcacagccgaaacacttgtgcagtttggacatctaggt 533

                                                                       
Query: 156 acagcctgactgacatacatcagcactcgccatatcgaccagcttcaccatttccagaag 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 acagcctgactgacatacatcagcactcgccatatcgaccagcttcaccatttccagaag 473

                                                                     
Query: 216 acgttggacccgcacttgaacttctccttcccctcgcactcgatctcgaggtcgtcgg 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 acgttggacccgcacttgaacttctccttcccctcgcactcgatctcgaggtcgtcgg 415

>gb|AF052429.1|AF052429 Zea mays photosystem I complex PsaN subunit precursor (psaN) mRNA,
           nuclear gene encoding chloroplast protein, partial cds
          Length = 518

 Score =  119 bits (60), Expect = 5e-24
 Identities = 72/76 (94%)
 Strand = Plus / Minus

                                                                       
Query: 197 gcttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgcactc 256
           ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 343 gcttcaccacttccagaaaacgttggagccgcacttgaacttctccttcccctcgcactc 284

                           
Query: 257 gatctcgaggtcgtcg 272
            |||||||||||||||
Sbjct: 283 aatctcgaggtcgtcg 268

>gb|AY103702.1| Zea mays PCO139408 mRNA sequence
          Length = 756

 Score =  119 bits (60), Expect = 5e-24
 Identities = 72/76 (94%)
 Strand = Plus / Minus

                                                                       
Query: 197 gcttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgcactc 256
           ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 558 gcttcaccacttccagaaaacgttggagccgcacttgaacttctccttcccctcgcactc 499

                           
Query: 257 gatctcgaggtcgtcg 272
            |||||||||||||||
Sbjct: 498 aatctcgaggtcgtcg 483

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  115 bits (58), Expect = 8e-23
 Identities = 64/66 (96%)
 Strand = Plus / Minus

                                                                           
Query: 200     tcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgcactcgat 259
               |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 4506571 tcaccatttccagaagacgttggatccgcacttgtacttctccttcccctcgcactcgat 4506512

                     
Query: 260     ctcgag 265
               ||||||
Sbjct: 4506511 ctcgag 4506506

>dbj|AK059037.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-C11, full
           insert sequence
          Length = 657

 Score =  115 bits (58), Expect = 8e-23
 Identities = 64/66 (96%)
 Strand = Plus / Minus

                                                                       
Query: 200 tcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgcactcgat 259
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 499 tcaccatttccagaagacgttggatccgcacttgtacttctccttcccctcgcactcgat 440

                 
Query: 260 ctcgag 265
           ||||||
Sbjct: 439 ctcgag 434

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  115 bits (58), Expect = 8e-23
 Identities = 64/66 (96%)
 Strand = Plus / Minus

                                                                           
Query: 200     tcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgcactcgat 259
               |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 4506552 tcaccatttccagaagacgttggatccgcacttgtacttctccttcccctcgcactcgat 4506493

                     
Query: 260     ctcgag 265
               ||||||
Sbjct: 4506492 ctcgag 4506487

>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129155

 Score =  115 bits (58), Expect = 8e-23
 Identities = 64/66 (96%)
 Strand = Plus / Plus

                                                                         
Query: 200   tcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgcactcgat 259
             |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 98207 tcaccatttccagaagacgttggatccgcacttgtacttctccttcccctcgcactcgat 98266

                   
Query: 260   ctcgag 265
             ||||||
Sbjct: 98267 ctcgag 98272

>gb|DQ175832.1| Hordeum vulgare clone DsB30 Ds insertion site flanking region
           genomic sequence
          Length = 806

 Score =  105 bits (53), Expect = 7e-20
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                
Query: 62  aattacaggtgaaaaacaggattccacttgatgataaaattacagagacgatg 114
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aattacaggtgaaaaacaggattccacttgatgataaaattacagagacgatg 670

>dbj|AK058774.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-A07, full
           insert sequence
          Length = 591

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                          
Query: 200 tcaccatttccagaagacgttggacccgcacttgaacttctccttcc 246
           |||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 384 tcaccatttccagaagacgttggatccgcacttgtacttctccttcc 338

>gb|AY233207.1| Vitis vinifera putative photosystem I reaction center subunit N
           precursor (PsaN) mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 359

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaactt 238
           ||||||||||||||||| || ||||| ||||||||| ||||
Sbjct: 261 cttcaccatttccagaaaacattggaaccgcacttgtactt 221

>ref|NM_125800.3| Arabidopsis thaliana PSI-N; calmodulin binding AT5G64040 (PSI-N)
           transcript variant AT5G64040.1 mRNA, complete cds
          Length = 747

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 613 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 558

>ref|NM_001037056.1| Arabidopsis thaliana PSI-N; calmodulin binding AT5G64040 (PSI-N)
           transcript variant AT5G64040.2 mRNA, complete cds
          Length = 950

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 816 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 761

>gb|AY081594.1| Arabidopsis thaliana photosystem I reaction center subunit psaN
           precursor (At5g64040) mRNA, complete cds
          Length = 605

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 518 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 463

>gb|AY062835.1| Arabidopsis thaliana photosystem I reaction centre subunit psaN
           precursor (At5g64040; MHJ24.2) mRNA, complete cds
          Length = 685

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 574 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 519

>emb|BX834109.1|CNS0A0GR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL9ZF02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 650

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 525 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 470

>emb|BX833455.1|CNS0A0LJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL56ZH04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 647

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 566 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 511

>emb|BX830459.1|CNS09YUQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB83ZA11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 639

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 552 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 497

>emb|BX841638.1|CNS09YLQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB87ZC06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 637

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 553 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 498

>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24
          Length = 48622

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 198  cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
            ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 2128 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 2183

>gb|U32176.1|ATU32176 Arabidopsis thaliana photosystem I PSI-N mRNA, nuclear gene
           encoding chloroplast protein, complete cds
          Length = 637

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 198 cttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgca 253
           ||||||||||||||||| || ||||| || |||||| |||| ||||| || |||||
Sbjct: 548 cttcaccatttccagaaaacattggaaccacacttgtacttgtccttgccttcgca 493

>gb|DQ124073.1| Coffea arabica clone MN-SSH2-D11 mRNA sequence
          Length = 643

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 199 ttcaccatttccagaagacgttggacccgcacttgaacttctccttcccctcgcactc 256
           |||||||||||||||| || || || || ||||||||||| ||| | || ||||||||
Sbjct: 9   ttcaccatttccagaacacatttgaaccacacttgaacttgtccctgccttcgcactc 66

>gb|AC008136.4|AC008136 Drosophila melanogaster, chromosome 3R, region 88D-88E, BAC clone
              BACR08H11, complete sequence
          Length = 154890

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 191    cgaccagcttcaccatttccag 212
              ||||||||||||||||||||||
Sbjct: 139222 cgaccagcttcaccatttccag 139243

>gb|AC005721.3|AC005721 Drosophila melanogaster, chromosome 3R, region 88D8-88E1, BAC clone
              BACR48E23, complete sequence
          Length = 203183

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 191    cgaccagcttcaccatttccag 212
              ||||||||||||||||||||||
Sbjct: 116841 cgaccagcttcaccatttccag 116862

>gb|AE003706.5| Drosophila melanogaster chromosome 3R, section 44 of 118 of the complete
              sequence
          Length = 270961

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 191    cgaccagcttcaccatttccag 212
              ||||||||||||||||||||||
Sbjct: 253368 cgaccagcttcaccatttccag 253389

>gb|AC021867.19| Homo sapiens 3 BAC RP11-220G20 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 146809

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 64   ttacaggtgaaaaacaggatt 84
            |||||||||||||||||||||
Sbjct: 3891 ttacaggtgaaaaacaggatt 3911

>gb|AC008341.3| Drosophila melanogaster clone BACR15P11, complete sequence
          Length = 171235

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tctccttcccctcgcactcg 257
             ||||||||||||||||||||
Sbjct: 32169 tctccttcccctcgcactcg 32150

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 190     tcgaccagcttcaccatttc 209
               ||||||||||||||||||||
Sbjct: 1667689 tcgaccagcttcaccatttc 1667670

>gb|AY808370.1| Schistosoma japonicum SJCHGC08439 protein mRNA, partial cds
          Length = 771

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  gtttccactagtgcaattac 67
           ||||||||||||||||||||
Sbjct: 305 gtttccactagtgcaattac 324

>gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome 8, complete
            sequence
          Length = 208153

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  cttgaacttctccttcccct 249
            ||||||||||||||||||||
Sbjct: 2820 cttgaacttctccttcccct 2801

>gb|AC125207.5| Mus musculus BAC clone RP23-220C16 from 8, complete sequence
          Length = 189936

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    cttgaacttctccttcccct 249
              ||||||||||||||||||||
Sbjct: 104200 cttgaacttctccttcccct 104181

>gb|AC079796.5| Homo sapiens BAC clone RP11-612L3 from 7, complete sequence
          Length = 129320

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    atgtgacaggatatatgcag 47
             ||||||||||||||||||||
Sbjct: 89779 atgtgacaggatatatgcag 89760

>gb|AC161232.7| Mus musculus chromosome 3, clone RP24-369J22, complete sequence
          Length = 203311

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     aaacaggattccacttgatg 94
              ||||||||||||||||||||
Sbjct: 185706 aaacaggattccacttgatg 185725

>gb|AC177796.2| Mus musculus chromosome 3, clone wi1-1134L22, complete sequence
          Length = 36913

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   aaacaggattccacttgatg 94
            ||||||||||||||||||||
Sbjct: 5198 aaacaggattccacttgatg 5217

>gb|AE003834.3| Drosophila melanogaster chromosome 2R, section 16 of 73 of the complete
              sequence
          Length = 243313

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    tctccttcccctcgcactcg 257
              ||||||||||||||||||||
Sbjct: 219091 tctccttcccctcgcactcg 219072

>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      ccacttgatgataaaattac 104
               ||||||||||||||||||||
Sbjct: 1181476 ccacttgatgataaaattac 1181457

>emb|AL928840.8| Mouse DNA sequence from clone RP24-233J2 on chromosome 2, complete
            sequence
          Length = 35917

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  gcctgactgacatacatcag 178
            ||||||||||||||||||||
Sbjct: 1361 gcctgactgacatacatcag 1380

>emb|AL732450.5| Mouse DNA sequence from clone RP23-190H10 on chromosome X, complete
              sequence
          Length = 160831

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     cacttgatgataaaattaca 105
              ||||||||||||||||||||
Sbjct: 108574 cacttgatgataaaattaca 108593

>emb|AL591712.18| Mouse DNA sequence from clone RP23-138C10 on chromosome 2, complete
              sequence
          Length = 168958

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    gcctgactgacatacatcag 178
              ||||||||||||||||||||
Sbjct: 168319 gcctgactgacatacatcag 168338


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,353,148
Number of Sequences: 3902068
Number of extensions: 2353148
Number of successful extensions: 47531
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47440
Number of HSP's gapped (non-prelim): 91
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)