ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet49c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DQ139268.1| Triticum aestivum geranylgeranyl hydrogenase mRNA... 90 2e-15
2emb|AL359834.18| Human DNA sequence from clone RP11-121P12 on ch... 42 0.42
3gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, co... 40 1.6
4gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 38 6.5
5gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome ... 38 6.5
6emb|AL391136.10| Human DNA sequence from clone RP11-304C14 on ch... 38 6.5
7gb|AC140854.4| Botryllus schlosseri clone subsf-371a15, complete... 38 6.5
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5

>gb|DQ139268.1| Triticum aestivum geranylgeranyl hydrogenase mRNA, complete cds
          Length = 1704

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 68/75 (90%), Gaps = 3/75 (4%)
 Strand = Plus / Minus

                                                                        
Query: 61   tacaagaaaatgggacaggttcgaccaagactcgacctctcgatcgacgccattacctct 120
            ||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||   
Sbjct: 1666 tacaagaaaaccggacaggatcgaccaagacacgacctctcgatcgacgccattacc--- 1610

                           
Query: 121  ttattctcatctcct 135
            |||||||||||||||
Sbjct: 1609 ttattctcatctcct 1595



 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 41   ctgaagtctgaacatcaccgt 61
            |||||||||||||||||||||
Sbjct: 1704 ctgaagtctgaacatcaccgt 1684



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>emb|AL359834.18| Human DNA sequence from clone RP11-121P12 on chromosome 1 Contains
            the 3' end of a novel gene, complete sequence
          Length = 70248

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 115  acctctttattctcatctcct 135
            |||||||||||||||||||||
Sbjct: 4992 acctctttattctcatctcct 4972



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>gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, complete sequence
          Length = 235574

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    tctttattctcatctcctat 137
              ||||||||||||||||||||
Sbjct: 126877 tctttattctcatctcctat 126896



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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    caagaaaatgggacaggtt 81
             |||||||||||||||||||
Sbjct: 91106 caagaaaatgggacaggtt 91124



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>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
              OSJNBa0043I04, complete sequence
          Length = 145191

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     tgttctgaagtctgaacat 55
              |||||||||||||||||||
Sbjct: 125333 tgttctgaagtctgaacat 125351



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>emb|AL391136.10| Human DNA sequence from clone RP11-304C14 on chromosome 10 Contains
             part of the TLL2 gene for  tolloid-like 2, complete
             sequence
          Length = 66188

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    aactgttctgaagtctgaa 52
             |||||||||||||||||||
Sbjct: 30301 aactgttctgaagtctgaa 30319



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>gb|AC140854.4| Botryllus schlosseri clone subsf-371a15, complete sequence
          Length = 29559

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    aaatgggacaggttcgacc 86
             |||||||||||||||||||
Sbjct: 22088 aaatgggacaggttcgacc 22070



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 37       tgttctgaagtctgaacat 55
                |||||||||||||||||||
Sbjct: 21779313 tgttctgaagtctgaacat 21779331


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 993,451
Number of Sequences: 3902068
Number of extensions: 993451
Number of successful extensions: 59045
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59016
Number of HSP's gapped (non-prelim): 28
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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