ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet49c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipop... 28 9.0

>APLP_MANSE (Q25490) Apolipophorins precursor [Contains: Apolipophorin-2|
            (Apolipophorin II) (apoLp-2); Apolipophorin-1
            (Apolipophorin I) (apoLp-1)]
          Length = 3305

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
 Frame = +3

Query: 36   KTHPSLSLRYHSPF------LLLQSSKLPST 110
            K HP L ++YHSP       L LQ S L ST
Sbjct: 1873 KAHPVLDIQYHSPSSDKIRRLYLQGSSLSST 1903


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,718,341
Number of Sequences: 219361
Number of extensions: 175275
Number of successful extensions: 709
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top