ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet49c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468939.1| Oryza sativa (japonica cultivar-group), mRNA 135 1e-28
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 135 1e-28
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
4gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genom... 135 1e-28
5gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genom... 135 1e-28
6dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
7dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
8dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
9gb|AY107457.1| Zea mays PCO103582 mRNA sequence 109 6e-21
10gb|BT019227.1| Zea mays clone Contig900.F mRNA sequence 101 1e-18
11ref|XM_736739.1| Plasmodium chabaudi chabaudi hypothetical prote... 44 0.27
12ref|XM_421723.1| PREDICTED: Gallus gallus similar to F-box/WD-re... 42 1.1
13gb|AC117444.6| Homo sapiens 3 BAC RP11-215L17 (Roswell Park Canc... 42 1.1
14gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence 42 1.1
15emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chro... 42 1.1
16gb|AF246683.1| Pemphigus spyrothecae microsatellite 98PS12 sequence 40 4.3
17gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map... 40 4.3
18gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence 40 4.3
19emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in ... 40 4.3
20emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, comple... 40 4.3
21emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in ... 40 4.3
22emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chr... 40 4.3
23gb|AC113223.3| Homo sapiens X BAC RP13-597O16 (Roswell Park Canc... 40 4.3
24gb|AC002367.1| Homo sapiens Xp22 PAC RPCI1-22N22 (Research Park ... 40 4.3
25emb|BX537121.4| Zebrafish DNA sequence from clone CH211-196P24 i... 40 4.3
26emb|CT737307.2| CH251-89L9, complete sequence 40 4.3
27emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, com... 40 4.3 
>ref|XM_468939.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 981

 Score =  135 bits (68), Expect = 1e-28
 Identities = 137/160 (85%)
 Strand = Plus / Minus

                                                                       
Query: 165 atttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 224
           ||||||| | || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 979 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 920

                                                                       
Query: 225 tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 284
           |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 919 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 860

                                                   
Query: 285 gcttcccaagagcattttcaactccagccatttccagcac 324
           | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 859 gtttccccagagcattttcaaccccagccatctccagcac 820
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  135 bits (68), Expect = 1e-28
 Identities = 137/160 (85%)
 Strand = Plus / Plus

                                                                            
Query: 165      atttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 224
                ||||||| | || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 19225001 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 19225060

                                                                            
Query: 225      tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 284
                |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 19225061 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 19225120

                                                        
Query: 285      gcttcccaagagcattttcaactccagccatttccagcac 324
                | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 19225121 gtttccccagagcattttcaaccccagccatctccagcac 19225160
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  135 bits (68), Expect = 1e-28
 Identities = 137/160 (85%)
 Strand = Plus / Plus

                                                                            
Query: 165      atttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 224
                ||||||| | || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 19219042 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 19219101

                                                                            
Query: 225      tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 284
                |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 19219102 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 19219161

                                                        
Query: 285      gcttcccaagagcattttcaactccagccatttccagcac 324
                | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 19219162 gtttccccagagcattttcaaccccagccatctccagcac 19219201
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>gb|AC137925.2| Oryza sativa chromosome 3 BAC OSJNBb0047D08 genomic sequence,
            complete sequence
          Length = 140507

 Score =  135 bits (68), Expect = 1e-28
 Identities = 137/160 (85%)
 Strand = Plus / Plus

                                                                        
Query: 165  atttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 224
            ||||||| | || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 9162 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 9221

                                                                        
Query: 225  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 284
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 9222 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 9281

                                                    
Query: 285  gcttcccaagagcattttcaactccagccatttccagcac 324
            | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 9282 gtttccccagagcattttcaaccccagccatctccagcac 9321
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>gb|AC135226.4| Oryza sativa chromosome 3 BAC OSJNBa0037J17 genomic sequence, complete
             sequence
          Length = 150137

 Score =  135 bits (68), Expect = 1e-28
 Identities = 137/160 (85%)
 Strand = Plus / Minus

                                                                         
Query: 165   atttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 224
             ||||||| | || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 18461 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 18402

                                                                         
Query: 225   tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 284
             |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 18401 tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 18342

                                                     
Query: 285   gcttcccaagagcattttcaactccagccatttccagcac 324
             | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 18341 gtttccccagagcattttcaaccccagccatctccagcac 18302
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>dbj|AK119178.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-G07, full
            insert sequence
          Length = 1281

 Score =  135 bits (68), Expect = 1e-28
 Identities = 137/160 (85%)
 Strand = Plus / Minus

                                                                        
Query: 165  atttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 224
            ||||||| | || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1028 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 969

                                                                        
Query: 225  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 284
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 968  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 909

                                                    
Query: 285  gcttcccaagagcattttcaactccagccatttccagcac 324
            | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 908  gtttccccagagcattttcaaccccagccatctccagcac 869
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>dbj|AK065820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042D13, full
            insert sequence
          Length = 1296

 Score =  135 bits (68), Expect = 1e-28
 Identities = 137/160 (85%)
 Strand = Plus / Minus

                                                                        
Query: 165  atttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 224
            ||||||| | || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1034 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 975

                                                                        
Query: 225  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 284
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 974  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 915

                                                    
Query: 285  gcttcccaagagcattttcaactccagccatttccagcac 324
            | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 914  gtttccccagagcattttcaaccccagccatctccagcac 875
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>dbj|AK060924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H10, full
            insert sequence
          Length = 1201

 Score =  135 bits (68), Expect = 1e-28
 Identities = 137/160 (85%)
 Strand = Plus / Minus

                                                                        
Query: 165  atttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtctca 224
            ||||||| | || |||||| ||||| || ||||||||||| |||||   |||||| ||||
Sbjct: 1038 atttccatagctgctccattggaagcccgcgctctgcagcaacatccttgaactgcctca 979

                                                                        
Query: 225  tcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgcagct 284
            |||| || |||||||||| |||||| |||||||||||||| || |||||||| | |||||
Sbjct: 978  tcatttgggtcgccttgatggtagctcttgcattgttgagggggttcttgctcctcagct 919

                                                    
Query: 285  gcttcccaagagcattttcaactccagccatttccagcac 324
            | ||||| |||||||||||||| |||||||| ||||||||
Sbjct: 918  gtttccccagagcattttcaaccccagccatctccagcac 879
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>gb|AY107457.1| Zea mays PCO103582 mRNA sequence
          Length = 840

 Score =  109 bits (55), Expect = 6e-21
 Identities = 136/163 (83%)
 Strand = Plus / Minus

                                                                       
Query: 162 atcatttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtc 221
           |||||||||||| ||||||||| ||||  ||||||||  |||| |||||   ||||||  
Sbjct: 576 atcatttccacagctcctccattggaataccacgctcctcagcgacatccttgaactgct 517

                                                                       
Query: 222 tcatcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgca 281
           |||||||||||||||||||||  || || |  || ||||| || || |||||||| ||||
Sbjct: 516 tcatcatctgcgtcgccttgatagtggctcgagcgttgttcagggggttcttgctgcgca 457

                                                      
Query: 282 gctgcttcccaagagcattttcaactccagccatttccagcac 324
           ||||||| || |||||||||||||| |||||||| ||||||||
Sbjct: 456 gctgcttgcccagagcattttcaacaccagccatctccagcac 414
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>gb|BT019227.1| Zea mays clone Contig900.F mRNA sequence
          Length = 584

 Score =  101 bits (51), Expect = 1e-18
 Identities = 132/159 (83%)
 Strand = Plus / Plus

                                                                       
Query: 162 atcatttccacaactcctccatcggaagtccacgctctgcagccacatctgagaactgtc 221
           |||||||||||| ||||||||| ||||  ||||||||  |||| |||||   ||||||  
Sbjct: 272 atcatttccacagctcctccattggaataccacgctcctcagcgacatccttgaactgct 331

                                                                       
Query: 222 tcatcatctgcgtcgccttgacggtagcccttgcattgttgagaggattcttgcttcgca 281
           |||||||||||||||||||||  || || |  || ||||| || || |||||||| ||||
Sbjct: 332 tcatcatctgcgtcgccttgatagtggctcgggcgttgttcagggggttcttgctgcgca 391

                                                  
Query: 282 gctgcttcccaagagcattttcaactccagccatttcca 320
           ||||||| || |||||||||||||| |||||||| ||||
Sbjct: 392 gctgcttgcccagagcattttcaacaccagccatctcca 430
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>ref|XM_736739.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000305.01.0)
            partial mRNA
          Length = 2391

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 150  tgattttgtttcatcatttcca 171
            ||||||||||||||||||||||
Sbjct: 1296 tgattttgtttcatcatttcca 1275
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>ref|XM_421723.1| PREDICTED: Gallus gallus similar to F-box/WD-repeat protein 1A
           (F-box and WD-repeats protein beta-TrCP) (E3RSIkappaB)
           (pIkappaBalpha-E3 receptor subunit) (LOC423854), mRNA
          Length = 4126

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 158 tttcatcatttccacaactcc 178
           |||||||||||||||||||||
Sbjct: 198 tttcatcatttccacaactcc 178
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>gb|AC117444.6| Homo sapiens 3 BAC RP11-215L17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104853

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 296   gcattttcaactccagccatt 316
             |||||||||||||||||||||
Sbjct: 17575 gcattttcaactccagccatt 17595
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>gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence
          Length = 175949

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   tctgcagccacatctgagaac 217
             |||||||||||||||||||||
Sbjct: 66674 tctgcagccacatctgagaac 66694
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>emb|CR974592.5| Mouse DNA sequence from clone RP23-56C15 on chromosome 12, complete
             sequence
          Length = 201549

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 148   aatgattttgtttcatcattt 168
             |||||||||||||||||||||
Sbjct: 34394 aatgattttgtttcatcattt 34374
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>gb|AF246683.1| Pemphigus spyrothecae microsatellite 98PS12 sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 74  aatatatagatacaacagga 93
           ||||||||||||||||||||
Sbjct: 543 aatatatagatacaacagga 524
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>gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map human ortholog p21.3,
             complete sequence
          Length = 194447

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   gcttcccaagagcattttca 304
             ||||||||||||||||||||
Sbjct: 51984 gcttcccaagagcattttca 52003
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>gb|AC146500.2| Danio rerio clone CH211-130P22, complete sequence
          Length = 165269

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 142   cagtttaatgattttgtttcatcatttc 169
             ||||||| |||||||| |||||||||||
Sbjct: 88282 cagtttagtgattttgcttcatcatttc 88309
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>emb|CR392003.9| Zebrafish DNA sequence from clone DKEY-242N9 in linkage group 3,
             complete sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 142   cagtttaatgattttgtttcatcatttc 169
             ||||||| |||||||| |||||||||||
Sbjct: 99499 cagtttagtgattttgcttcatcatttc 99472
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>emb|Z68338.1|CET24B8 Caenorhabditis elegans Cosmid T24B8, complete sequence
          Length = 38779

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   agtttaatgattttgtttca 162
             ||||||||||||||||||||
Sbjct: 15035 agtttaatgattttgtttca 15054
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>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5,
             complete sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 165   atttccacaactcctccatcggaa 188
             ||||||| ||||||||||||||||
Sbjct: 57705 atttccataactcctccatcggaa 57682
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>emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chromosome 10, complete
             sequence
          Length = 108373

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   tgcttcgcagctgcttccca 292
             ||||||||||||||||||||
Sbjct: 22518 tgcttcgcagctgcttccca 22537
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>gb|AC113223.3| Homo sapiens X BAC RP13-597O16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165785

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    gcttcccaagagcattttca 304
              ||||||||||||||||||||
Sbjct: 130967 gcttcccaagagcattttca 130986
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>gb|AC002367.1| Homo sapiens Xp22 PAC RPCI1-22N22 (Research Park PAC library) complete
              sequence
          Length = 148600

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    gcttcccaagagcattttca 304
              ||||||||||||||||||||
Sbjct: 139679 gcttcccaagagcattttca 139660
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>emb|BX537121.4| Zebrafish DNA sequence from clone CH211-196P24 in linkage group 3,
              complete sequence
          Length = 184845

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 142    cagtttaatgattttgtttcatcatttc 169
              ||||||| |||||||| |||||||||||
Sbjct: 168995 cagtttagtgattttgcttcatcatttc 168968
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>emb|CT737307.2| CH251-89L9, complete sequence
          Length = 180080

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   gcttcccaagagcattttca 304
             ||||||||||||||||||||
Sbjct: 56465 gcttcccaagagcattttca 56446
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>emb|AL844193.6| Zebrafish DNA sequence from clone DKEY-28J3, complete sequence
          Length = 210900

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   aatgattttgtttcatcatt 167
             ||||||||||||||||||||
Sbjct: 54435 aatgattttgtttcatcatt 54454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,204,039
Number of Sequences: 3902068
Number of extensions: 3204039
Number of successful extensions: 60293
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60205
Number of HSP's gapped (non-prelim): 86
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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