ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet48h02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (XEA) Length = 1174 Score = 509 bits (257), Expect = e-141 Identities = 260/261 (99%) Strand = Plus / Minus Query: 1 cagagaaaaacaaacacatgaagaacagaacgagatgagacatatattacacacgatctg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1174 cagagaaaaacaaacacatgaagaacagaacgagatgagacatatattacacacgatctg 1115 Query: 61 aacgtgacaaggagcaaacagaagaatctaccacccgctccatttcacattatcccccct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 aacgtgacaaggagcaaacagaagaatctaccacccgctccatttcacattatcccccct 1055 Query: 121 cactggtccttatttatcatacagtacaatacagacgcccccatcttccctatccccggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1054 cactggtccttatttatcatacagtacaatacagacgcccccatcttccctatctccggc 995 Query: 181 cgtcttcctccggcgatcgacgtatacacggacggtccaatgctaccttgcttttgatgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 cgtcttcctccggcgatcgacgtatacacggacggtccaatgctaccttgcttttgatgg 935 Query: 241 acggggactacatggagcact 261 ||||||||||||||||||||| Sbjct: 934 acggggactacatggagcact 914
>emb|AL591304.1| Human DNA sequence from clone RP11-21G12 on chromosome 6, complete sequence Length = 35013 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 aaaaacaaacacatgaagaacagaa 30 ||||||||||||||||| ||||||| Sbjct: 27216 aaaaacaaacacatgaacaacagaa 27240
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 aaacaaacacatgaagaacag 28 ||||||||||||||||||||| Sbjct: 6009611 aaacaaacacatgaagaacag 6009631 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aaacaaacacatgaagaacag 28 ||||||||||||||||||||| Sbjct: 6003871 aaacaaacacatgaagaacag 6003851
>gb|AC087896.15|AC087896 Homo sapiens 12q BAC RP11-777K21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183562 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Minus Query: 6 aaaaacaaacacatgaagaacagaa 30 ||||||||||||||||| ||||||| Sbjct: 144429 aaaaacaaacacatgaacaacagaa 144405
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 aaacaaacacatgaagaacag 28 ||||||||||||||||||||| Sbjct: 30450 aaacaaacacatgaagaacag 30470 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aaacaaacacatgaagaacag 28 ||||||||||||||||||||| Sbjct: 24710 aaacaaacacatgaagaacag 24690
>gb|BC090193.1| Xenopus laevis cDNA clone MGC:85054 IMAGE:6327047, complete cds Length = 1785 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 tggtccttatttatcatacag 144 ||||||||||||||||||||| Sbjct: 1462 tggtccttatttatcatacag 1442
>gb|AC113970.8| Mus musculus chromosome 1, clone RP23-125E16, complete sequence Length = 235703 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 aaaaacaaacacatgaagaa 25 |||||||||||||||||||| Sbjct: 83070 aaaaacaaacacatgaagaa 83051
>emb|AL590111.14| Human DNA sequence from clone RP11-570F3 on chromosome 10 Contains part of a novel gene (FLJ30499) and the 3' end of a novel gene (FLJ30450), complete sequence Length = 41069 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ctcactggtccttatttatc 138 |||||||||||||||||||| Sbjct: 3262 ctcactggtccttatttatc 3243
>emb|BX571768.19| Zebrafish DNA sequence from clone DKEYP-2C4 in linkage group 11, complete sequence Length = 111222 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 tatttatcatacagtacaat 150 |||||||||||||||||||| Sbjct: 36635 tatttatcatacagtacaat 36616
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cccggccgtcttcctccggc 194 |||||||||||||||||||| Sbjct: 951280 cccggccgtcttcctccggc 951261 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,770,035 Number of Sequences: 3902068 Number of extensions: 2770035 Number of successful extensions: 51806 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51768 Number of HSP's gapped (non-prelim): 38 length of query: 261 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 239 effective length of database: 17,147,199,772 effective search space: 4098180745508 effective search space used: 4098180745508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
