ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet48f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless) 28 6.8
2CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel al... 28 8.9

>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)|
          Length = 541

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 167 HRRPSEQQRVGLRHQLRPRKLNVFSSHPSVHRTRYACVLVRRGSTCS 27
           H++P +QQ+  L HQ +P++      H   H    A  + RR S+ S
Sbjct: 356 HQQPQQQQQQQLHHQQQPQQ----HQHQQQHPDSTATDVARRSSSSS 398



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>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit|
           (Voltage-gated calcium channel alpha subunit Cav1.2)
           (Calcium channel, L type, alpha-1 polypeptide, isoform
           1, cardiac muscle) (Smooth muscle calcium channel
           blocker receptor)
          Length = 2171

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 11  TQSTCSYTLIHDVQV-HMHISSDGQTDG 91
           T+STC  T++H+ Q+ H +IS  G   G
Sbjct: 24  TESTCKGTVVHEAQLNHFYISPGGSNYG 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,428,808
Number of Sequences: 219361
Number of extensions: 342996
Number of successful extensions: 1017
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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