ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet48f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor ... 41 6e-04
2NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor ... 37 0.015
3SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor 27 9.2
4RGP1_XENLA (O13066) Ran GTPase-activating protein 1 27 9.2

>NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor (EC 3.4.23.-)|
           (Nepenthesin-I)
          Length = 437

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = -1

Query: 376 IPTVALVFDGGKVVDLDANGIIFGS----CLAFXXXXXXXXXGIIGNVQQRTLEVLYDVG 209
           IPT  + FDGG +     N  I  S    CLA           I GN+QQ+ + V+YD G
Sbjct: 366 IPTFVMHFDGGDLELPSENYFISPSNGLICLAMGSSSQGMS--IFGNIQQQNMLVVYDTG 423

Query: 208 QSVFGFKSNAC 176
            SV  F S  C
Sbjct: 424 NSVVSFASAQC 434



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>NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor (EC 3.4.23.-)|
           (Nepenthesin-II)
          Length = 438

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -1

Query: 382 VTIPTVALVFDGGKVVDLDANGIIFGS-----CLAFXXXXXXXXXGIIGNVQQRTLEVLY 218
           V +P +++ FDGG V++L    I+        CLA           I GN+QQ+  +VLY
Sbjct: 364 VQVPEISMQFDGG-VLNLGEQNILISPAEGVICLAMGSSSQLGIS-IFGNIQQQETQVLY 421

Query: 217 DVGQSVFGFKSNAC 176
           D+      F    C
Sbjct: 422 DLQNLAVSFVPTQC 435



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>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor|
          Length = 307

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 210 PTS*STSRVLCCTXXXXXXXXXXXXXXNARQLPNMIPLASRSTTLPPSNTKAT 368
           PT  ST++  C T                 QLP   P  +++TT  P+ TKAT
Sbjct: 58  PTQQSTTQPPCTTSKPTTPKQTTT------QLPCTTPTTTKATTTKPTTTKAT 104



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>RGP1_XENLA (O13066) Ran GTPase-activating protein 1|
          Length = 580

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 107 PS*PPFIPVSRARALSSPGDEQLARVG 187
           P+ PP +PV  +  LS P  E+L R+G
Sbjct: 417 PASPPKLPVDASTFLSFPSPEKLVRMG 443


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,241,198
Number of Sequences: 219361
Number of extensions: 614099
Number of successful extensions: 1523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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