ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet48c11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474115.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1635 Score = 212 bits (107), Expect = 7e-52 Identities = 262/313 (83%), Gaps = 3/313 (0%) Strand = Plus / Minus Query: 79 ttccttctcttgcttgttcttgacgaccttttaccctt---tccagaatctgattccatg 135 ||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| Sbjct: 1628 ttcctcctcttgcttgttcttgacgatcttttacctttggttccagaatctggcaccatt 1569 Query: 136 gccagtggcaccagcatacctcctttgagatcatcagcatgtgaactcttcgccatagac 195 | ||||||||||||| ||||||||||||||||||||||| | | ||||| | || || Sbjct: 1568 gggagtggcaccagcaaacctcctttgagatcatcagcatttttattcttctcgatcgat 1509 Query: 196 ttttgtaacttaatggaatatctgaagtcttttatctgttcttccaggtcaagaatcata 255 || |||||||| |||||| || |||| ||||||||||||||||| || ||| |||| || Sbjct: 1508 ttctgtaacttgatggaaaatttgaaatcttttatctgttcttctagatcacgaattgta 1449 Query: 256 tcatccttcagcttcaactgggctctctccctttcctctattcctttcactgtctggcgc 315 ||||| |||| ||||| || || |||||||||||||| ||| |||| | ||| | ||| Sbjct: 1448 tcatctttcaacttcagttgagccctctccctttcctcaatttcttttagtgttcgacgc 1389 Query: 316 catatatcctggcttttcgtgagtttttcattcatttcagcaactttctttttctccaac 375 |||||||||||| | |||||||||||||||||||| || |||| |||||||||||||||| Sbjct: 1388 catatatcctggttcttcgtgagtttttcattcatatctgcaagtttctttttctccaac 1329 Query: 376 attgtattttcaa 388 |||| ||| |||| Sbjct: 1328 attgcattctcaa 1316
>dbj|AK071891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057F24, full insert sequence Length = 1858 Score = 212 bits (107), Expect = 7e-52 Identities = 262/313 (83%), Gaps = 3/313 (0%) Strand = Plus / Minus Query: 79 ttccttctcttgcttgttcttgacgaccttttaccctt---tccagaatctgattccatg 135 ||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| Sbjct: 1658 ttcctcctcttgcttgttcttgacgatcttttacctttggttccagaatctggcaccatt 1599 Query: 136 gccagtggcaccagcatacctcctttgagatcatcagcatgtgaactcttcgccatagac 195 | ||||||||||||| ||||||||||||||||||||||| | | ||||| | || || Sbjct: 1598 gggagtggcaccagcaaacctcctttgagatcatcagcatttttattcttctcgatcgat 1539 Query: 196 ttttgtaacttaatggaatatctgaagtcttttatctgttcttccaggtcaagaatcata 255 || |||||||| |||||| || |||| ||||||||||||||||| || ||| |||| || Sbjct: 1538 ttctgtaacttgatggaaaatttgaaatcttttatctgttcttctagatcacgaattgta 1479 Query: 256 tcatccttcagcttcaactgggctctctccctttcctctattcctttcactgtctggcgc 315 ||||| |||| ||||| || || |||||||||||||| ||| |||| | ||| | ||| Sbjct: 1478 tcatctttcaacttcagttgagccctctccctttcctcaatttcttttagtgttcgacgc 1419 Query: 316 catatatcctggcttttcgtgagtttttcattcatttcagcaactttctttttctccaac 375 |||||||||||| | |||||||||||||||||||| || |||| |||||||||||||||| Sbjct: 1418 catatatcctggttcttcgtgagtttttcattcatatctgcaagtttctttttctccaac 1359 Query: 376 attgtattttcaa 388 |||| ||| |||| Sbjct: 1358 attgcattctcaa 1346
>dbj|AK064227.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G10, full insert sequence Length = 1751 Score = 210 bits (106), Expect = 3e-51 Identities = 255/304 (83%), Gaps = 3/304 (0%) Strand = Plus / Minus Query: 79 ttccttctcttgcttgttcttgacgaccttttaccctt---tccagaatctgattccatg 135 ||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| Sbjct: 1638 ttcctcctcttgcttgttcttgacgatcttttacctttggttccagaatctggcaccatt 1579 Query: 136 gccagtggcaccagcatacctcctttgagatcatcagcatgtgaactcttcgccatagac 195 | ||||||||||||| ||||||||||||||||||||||| | | ||||| | || || Sbjct: 1578 gggagtggcaccagcaaacctcctttgagatcatcagcatttttattcttctcgatcgat 1519 Query: 196 ttttgtaacttaatggaatatctgaagtcttttatctgttcttccaggtcaagaatcata 255 || |||||||| |||||| || |||| ||||||||||||||||| || ||| |||| || Sbjct: 1518 ttctgtaacttgatggaaaatttgaaatcttttatctgttcttctagatcacgaattgta 1459 Query: 256 tcatccttcagcttcaactgggctctctccctttcctctattcctttcactgtctggcgc 315 ||||| |||| ||||| || || |||||||||||||| ||| |||| | ||| | ||| Sbjct: 1458 tcatctttcaacttcagttgagccctctccctttcctcaatttcttttagtgttcgacgc 1399 Query: 316 catatatcctggcttttcgtgagtttttcattcatttcagcaactttctttttctccaac 375 |||||||||||| | |||||||||||||||||||| || |||| |||||||||||||||| Sbjct: 1398 catatatcctggttcttcgtgagtttttcattcatatctgcaagtttctttttctccaac 1339 Query: 376 attg 379 |||| Sbjct: 1338 attg 1335
>emb|AL732337.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0821G03, complete sequence Length = 75285 Score = 105 bits (53), Expect = 1e-19 Identities = 136/163 (83%), Gaps = 3/163 (1%) Strand = Plus / Plus Query: 74 actaattccttctcttgcttgttcttgacgaccttttaccctt---tccagaatctgatt 130 |||| ||||| |||||||||||||||||||| |||||||| || ||||||||||| Sbjct: 59080 actagttcctcctcttgcttgttcttgacgatcttttacctttggttccagaatctggca 59139 Query: 131 ccatggccagtggcaccagcatacctcctttgagatcatcagcatgtgaactcttcgcca 190 |||| | ||||||||||||| ||||||||||||||||||||||| | | ||||| | | Sbjct: 59140 ccattgggagtggcaccagcaaacctcctttgagatcatcagcatttttattcttctcga 59199 Query: 191 tagacttttgtaacttaatggaatatctgaagtcttttatctg 233 | || || |||||||| |||||| || |||| ||||||||||| Sbjct: 59200 ttgatttctgtaacttgatggaaaatttgaaatcttttatctg 59242 Score = 67.9 bits (34), Expect = 2e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 285 cctttcctctattcctttcactgtctggcgccatatatcctggcttttcgtgagtttttc 344 ||||||||||||| |||| | ||| | ||||||||||||||| | |||||||||||||| Sbjct: 59541 cctttcctctatttcttttagtgttcgacgccatatatcctggttcttcgtgagtttttc 59600 Query: 345 attcat 350 |||||| Sbjct: 59601 attcat 59606 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 355 gcaactttctttttctccaacattgtattttcaa 388 |||| |||||||||||||||||||| ||| |||| Sbjct: 59702 gcaagtttctttttctccaacattgcattctcaa 59735
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 103 bits (52), Expect = 4e-19 Identities = 132/158 (83%), Gaps = 3/158 (1%) Strand = Plus / Plus Query: 79 ttccttctcttgcttgttcttgacgaccttttaccctt---tccagaatctgattccatg 135 ||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| Sbjct: 33028797 ttcctcctcttgcttgttcttgacgatcttttacctttggttccagaatctggcaccatt 33028856 Query: 136 gccagtggcaccagcatacctcctttgagatcatcagcatgtgaactcttcgccatagac 195 | ||||||||||||| ||||||||||||||||||||||| | | ||||| | || || Sbjct: 33028857 gggagtggcaccagcaaacctcctttgagatcatcagcatttttattcttctcgatcgat 33028916 Query: 196 ttttgtaacttaatggaatatctgaagtcttttatctg 233 || |||||||| |||||| || |||| ||||||||||| Sbjct: 33028917 ttctgtaacttgatggaaaatttgaaatcttttatctg 33028954 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 313 cgccatatatcctggcttttcgtgagtttttcattcat 350 ||||||||||||||| | |||||||||||||||||||| Sbjct: 33029429 cgccatatatcctggttcttcgtgagtttttcattcat 33029466 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 355 gcaactttctttttctccaacattgtattttcaa 388 |||| |||||||||||||||||||| ||| |||| Sbjct: 33029562 gcaagtttctttttctccaacattgcattctcaa 33029595
>emb|AL606635.3|OSJN00057 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence Length = 140626 Score = 103 bits (52), Expect = 4e-19 Identities = 132/158 (83%), Gaps = 3/158 (1%) Strand = Plus / Plus Query: 79 ttccttctcttgcttgttcttgacgaccttttaccctt---tccagaatctgattccatg 135 ||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| Sbjct: 38378 ttcctcctcttgcttgttcttgacgatcttttacctttggttccagaatctggcaccatt 38437 Query: 136 gccagtggcaccagcatacctcctttgagatcatcagcatgtgaactcttcgccatagac 195 | ||||||||||||| ||||||||||||||||||||||| | | ||||| | || || Sbjct: 38438 gggagtggcaccagcaaacctcctttgagatcatcagcatttttattcttctcgatcgat 38497 Query: 196 ttttgtaacttaatggaatatctgaagtcttttatctg 233 || |||||||| |||||| || |||| ||||||||||| Sbjct: 38498 ttctgtaacttgatggaaaatttgaaatcttttatctg 38535 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 313 cgccatatatcctggcttttcgtgagtttttcattcat 350 ||||||||||||||| | |||||||||||||||||||| Sbjct: 39010 cgccatatatcctggttcttcgtgagtttttcattcat 39047 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 355 gcaactttctttttctccaacattgtattttcaa 388 |||| |||||||||||||||||||| ||| |||| Sbjct: 39143 gcaagtttctttttctccaacattgcattctcaa 39176
>gb|AC133583.13| Mus musculus chromosome 12, clone RP24-444A9, complete sequence Length = 123042 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 287 tttcctctattcctttcactgt 308 |||||||||||||||||||||| Sbjct: 1070 tttcctctattcctttcactgt 1091
>gb|AC119810.8| Mus musculus chromosome 7, clone RP23-54G21, complete sequence Length = 185939 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 130 tccatggccagtggcaccagca 151 |||||||||||||||||||||| Sbjct: 77433 tccatggccagtggcaccagca 77454
>ref|XM_949815.1| Theileria annulata strain Ankara splicing factor subunit (TA03380) partial mRNA Length = 3327 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 357 aactttctttttctccaacatt 378 |||||||||||||||||||||| Sbjct: 423 aactttctttttctccaacatt 402
>gb|AC015528.14| Homo sapiens chromosome 8, clone RP11-179A23, complete sequence Length = 155518 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 364 tttttctccaacattgtatttt 385 |||||||||||||||||||||| Sbjct: 52345 tttttctccaacattgtatttt 52324
>gb|AC112909.4| Homo sapiens 3 BAC RP11-814O5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114411 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 279 tctctccctttcctctattcct 300 |||||||||||||||||||||| Sbjct: 34134 tctctccctttcctctattcct 34155
>gb|AC160946.6| Mus musculus 10 BAC RP23-175G6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 192628 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 288 ttcctctattcctttcactgtc 309 |||||||||||||||||||||| Sbjct: 14066 ttcctctattcctttcactgtc 14087
>gb|AC153917.6| Mus musculus 10 BAC RP23-283D8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182207 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 288 ttcctctattcctttcactgtc 309 |||||||||||||||||||||| Sbjct: 79941 ttcctctattcctttcactgtc 79920
>gb|AC133866.14| Mus musculus chromosome 12, clone RP24-478O24, complete sequence Length = 187626 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 tttcctctattcctttcactgt 308 |||||||||||||||||||||| Sbjct: 42050 tttcctctattcctttcactgt 42029
>ref|NM_120702.1| Arabidopsis thaliana unknown protein AT5G06200 mRNA, complete cds Length = 609 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 cttctcttgcttgttcttgac 102 ||||||||||||||||||||| Sbjct: 370 cttctcttgcttgttcttgac 390
>gb|AC133654.4| Mus musculus BAC clone RP24-332N10 from chromosome 15, complete sequence Length = 194622 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 tccaacattgtattttcaaac 390 ||||||||||||||||||||| Sbjct: 52477 tccaacattgtattttcaaac 52497
>ref|XM_648889.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (66.t00010) partial mRNA Length = 2439 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 ttagcatatgcaatgaatgatgaag 37 ||||||||||||||||| ||||||| Sbjct: 259 ttagcatatgcaatgaaagatgaag 283
>gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, complete sequence Length = 206087 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 ttcatttcagcaactttcttt 366 ||||||||||||||||||||| Sbjct: 106140 ttcatttcagcaactttcttt 106160
>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2 Length = 101154 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 356 caactttctttttctccaacattgt 380 |||||||||||||| |||||||||| Sbjct: 33400 caactttctttttcaccaacattgt 33376
>gb|AC113395.2| Homo sapiens chromosome 5 clone RP11-418P19, complete sequence Length = 195369 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 agcttagcatatgcaatgaat 30 ||||||||||||||||||||| Sbjct: 87620 agcttagcatatgcaatgaat 87600
>gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, complete sequence Length = 184864 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 ttcattcatttcagcaacttt 362 ||||||||||||||||||||| Sbjct: 93616 ttcattcatttcagcaacttt 93596
>dbj|AP002544.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBL20 Length = 35301 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 cttctcttgcttgttcttgac 102 ||||||||||||||||||||| Sbjct: 21557 cttctcttgcttgttcttgac 21577
>emb|BX649543.6| Zebrafish DNA sequence from clone DKEY-238K23 in linkage group 20, complete sequence Length = 42367 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 44 gcattcatagttcatactagcaaaa 68 ||||||||| ||||||||||||||| Sbjct: 34171 gcattcataattcatactagcaaaa 34195
>gb|AY111150.1| Zea mays CL37663_1 mRNA sequence Length = 664 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 gcatatgcaatgaatgatgaa 36 ||||||||||||||||||||| Sbjct: 546 gcatatgcaatgaatgatgaa 526
>emb|AL807379.17| Mouse DNA sequence from clone RP23-378L22 on chromosome 4, complete sequence Length = 186519 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 gggctctctccctttcctctattcc 299 |||||||||||||||||||| |||| Sbjct: 84672 gggctctctccctttcctctcttcc 84648
>gb|AC096684.3| Takifugu rubripes clone 241N7, complete sequence Length = 84793 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 gtttttcattcatttcagca 357 |||||||||||||||||||| Sbjct: 49416 gtttttcattcatttcagca 49435
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 cattgtattttcaaacttaa 394 |||||||||||||||||||| Sbjct: 36083583 cattgtattttcaaacttaa 36083564
>gb|AC125072.2| Mus musculus BAC clone RP23-458I4 from 3, complete sequence Length = 192026 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 gcaatgaatgatgaaggtcc 41 |||||||||||||||||||| Sbjct: 98238 gcaatgaatgatgaaggtcc 98257
>ref|XM_758137.1| Theileria parva strain Muguga chromosome 3 splicing factor 3B subunit 1 (TP03_0212) partial mRNA Length = 3324 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 actttctttttctccaacat 377 |||||||||||||||||||| Sbjct: 419 actttctttttctccaacat 400
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 cattgtattttcaaacttaa 394 |||||||||||||||||||| Sbjct: 145094 cattgtattttcaaacttaa 145075
>gb|AC157578.7| Mus musculus chromosome 3, clone RP24-179O3, complete sequence Length = 172143 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gcaatgaatgatgaaggtcc 41 |||||||||||||||||||| Sbjct: 149005 gcaatgaatgatgaaggtcc 148986
>emb|AL732464.19| Mouse DNA sequence from clone RP23-453F10 on chromosome 4, complete sequence Length = 192919 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tctctccctttcctctattccttt 302 |||||||||||||||| ||||||| Sbjct: 94667 tctctccctttcctctcttccttt 94690
>gb|AC160831.2| Xenopus tropicalis BAC clone ISB1-45G24 containing the 3' end of the MYT1 gene, complete sequence Length = 79158 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 339 tttttcattcatttcagcaacttt 362 ||||||||||||||| |||||||| Sbjct: 44080 tttttcattcatttccgcaacttt 44057
>gb|AC010297.5| Homo sapiens chromosome 5 clone CTB-162J7, complete sequence Length = 157580 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tttctccaacattgtatttt 385 |||||||||||||||||||| Sbjct: 121350 tttctccaacattgtatttt 121369
>emb|BX005126.10| Zebrafish DNA sequence from clone CH211-129O9 in linkage group 5, complete sequence Length = 160487 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 367 ttctccaacattgtattttcaaacttaa 394 ||||| ||| |||||||||||||||||| Sbjct: 28883 ttctcaaaccttgtattttcaaacttaa 28910
>gb|AC018953.11| Homo sapiens chromosome 8, clone RP11-573J24, complete sequence Length = 182712 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 gcaactttctttttctccaacatt 378 ||||||||||||| |||||||||| Sbjct: 108170 gcaactttcttttgctccaacatt 108193
>gb|AC069133.6| Homo sapiens BAC clone RP11-579E24 from 8, complete sequence Length = 201146 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 355 gcaactttctttttctccaacatt 378 ||||||||||||| |||||||||| Sbjct: 26944 gcaactttcttttgctccaacatt 26967
>ref|XM_688936.1| PREDICTED: Danio rerio similar to phospholipase C, delta 4 (LOC565669), mRNA Length = 2271 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tggcaccagcatacctcctt 160 |||||||||||||||||||| Sbjct: 2211 tggcaccagcatacctcctt 2230
>gb|DQ056244.1| Sinojackia xylocarpa clone Sx9 microsatellite sequence Length = 518 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ctctctccctttcctctatt 297 |||||||||||||||||||| Sbjct: 139 ctctctccctttcctctatt 120
>emb|BX510647.10| Zebrafish DNA sequence from clone CH211-87N9 in linkage group 5, complete sequence Length = 198695 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 367 ttctccaacattgtattttcaaacttaa 394 ||||| ||| |||||||||||||||||| Sbjct: 39179 ttctcaaaccttgtattttcaaacttaa 39152
>gb|AC158597.7| Mus musculus 10 BAC RP24-216E13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 167526 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ttcaactgggctctctccct 287 |||||||||||||||||||| Sbjct: 139062 ttcaactgggctctctccct 139043
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 tttctccaacattgtattttcaaa 389 |||||||||||||||| ||||||| Sbjct: 21836894 tttctccaacattgtagtttcaaa 21836871 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 234 ttcttccaggtcaagaatcatatcatccttcagctt 269 |||||||||||| | ||||| |||||||||| |||| Sbjct: 13470248 ttcttccaggtctataatcaaatcatccttctgctt 13470283
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 cattgtattttcaaacttaa 394 |||||||||||||||||||| Sbjct: 36173657 cattgtattttcaaacttaa 36173638
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 agaatctgattccatggcca 139 |||||||||||||||||||| Sbjct: 34415486 agaatctgattccatggcca 34415467
>gb|AC110073.3| Homo sapiens BAC clone RP11-62A4 from 4, complete sequence Length = 130088 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ttttgtaacttaatggaata 215 |||||||||||||||||||| Sbjct: 1718 ttttgtaacttaatggaata 1737
>gb|AC098858.3| Homo sapiens BAC clone RP11-149A7 from 4, complete sequence Length = 172419 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ttttgtaacttaatggaata 215 |||||||||||||||||||| Sbjct: 172137 ttttgtaacttaatggaata 172156
>gb|AC155714.6| Mus musculus 10 BAC RP24-165I13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 167195 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ttcaactgggctctctccct 287 |||||||||||||||||||| Sbjct: 39819 ttcaactgggctctctccct 39800
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 agaatctgattccatggcca 139 |||||||||||||||||||| Sbjct: 97830 agaatctgattccatggcca 97811
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 tcagcttcaactgggctctc 282 |||||||||||||||||||| Sbjct: 349348 tcagcttcaactgggctctc 349367
>emb|BX005472.11| Zebrafish DNA sequence from clone CH211-119C22 in linkage group 11, complete sequence Length = 158170 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ttttctccaacattgtattt 384 |||||||||||||||||||| Sbjct: 148244 ttttctccaacattgtattt 148263
>emb|BX548072.14| Zebrafish DNA sequence from clone DKEYP-84A8 in linkage group 22, complete sequence Length = 188936 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tggcaccagcatacctcctt 160 |||||||||||||||||||| Sbjct: 175742 tggcaccagcatacctcctt 175761
>gb|AC172989.2| Mus musculus BAC clone RP24-556J6 from chromosome 15, complete sequence Length = 184996 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 actttctttttctccaacat 377 |||||||||||||||||||| Sbjct: 59121 actttctttttctccaacat 59102
>gb|AY664414.1| Zea mays cultivar B73 locus 9008, complete sequence Length = 339089 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 gagcttagcatatgcaatga 28 |||||||||||||||||||| Sbjct: 34368 gagcttagcatatgcaatga 34349
>dbj|AK113294.1| Ciona intestinalis cDNA, clone:ciad029j02, full insert sequence Length = 2606 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 gtgagtttttcattcatttc 353 |||||||||||||||||||| Sbjct: 618 gtgagtttttcattcatttc 599
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 366 tttctccaacattgtattttcaaa 389 |||||||||||||||| ||||||| Sbjct: 21765239 tttctccaacattgtagtttcaaa 21765216 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 234 ttcttccaggtcaagaatcatatcatccttcagctt 269 |||||||||||| | ||||| |||||||||| |||| Sbjct: 13424522 ttcttccaggtctataatcaaatcatccttctgctt 13424557
>emb|AL731758.4|CNS08C87 Oryza sativa chromosome 12, . BAC OSJNBa0029K06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154442 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 234 ttcttccaggtcaagaatcatatcatccttcagctt 269 |||||||||||| | ||||| |||||||||| |||| Sbjct: 114991 ttcttccaggtctataatcaaatcatccttctgctt 114956
>emb|AL732647.4|CNS08C9M Oryza sativa chromosome 12, . BAC OSJNBb0087J18 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121592 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 tttctccaacattgtattttcaaa 389 |||||||||||||||| ||||||| Sbjct: 86438 tttctccaacattgtagtttcaaa 86461
>gb|AC167818.4| Mus musculus BAC clone RP23-120O24 from chromosome 15, complete sequence Length = 203474 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 actttctttttctccaacat 377 |||||||||||||||||||| Sbjct: 23677 actttctttttctccaacat 23658
>gb|AC132356.3| Mus musculus BAC clone RP24-119I6 from 1, complete sequence Length = 184142 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 acatgcagagcttagcatat 21 |||||||||||||||||||| Sbjct: 48502 acatgcagagcttagcatat 48521
>gb|AF064456.1|AF064456 Oryza sativa subsp. indica calmodulin-like protein gene, complete cds Length = 2408 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 agaatctgattccatggcca 139 |||||||||||||||||||| Sbjct: 1133 agaatctgattccatggcca 1114
>emb|CT573078.1| Medicago truncatula chromosome 5 clone mte1-4f8, COMPLETE SEQUENCE Length = 165916 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tgagtttttcattcatttca 354 |||||||||||||||||||| Sbjct: 40057 tgagtttttcattcatttca 40038
>gb|AC161599.3| Mus musculus BAC clone RP23-346B16 from chromosome 9, complete sequence Length = 198471 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tcaagaatcatatcatcctt 263 |||||||||||||||||||| Sbjct: 144278 tcaagaatcatatcatcctt 144259
>emb|AL627251.13| Mouse DNA sequence from clone RP23-336G7 on chromosome 4, complete sequence Length = 204039 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 tttcattcatttcagcaact 360 |||||||||||||||||||| Sbjct: 93718 tttcattcatttcagcaact 93699
>emb|AL646006.17| Mouse DNA sequence from clone RP23-168C23 on chromosome 4, complete sequence Length = 151509 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 ctctctccctttcctctattcctt 301 |||||||||||||||||| ||||| Sbjct: 109134 ctctctccctttcctctagtcctt 109111 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,415,385 Number of Sequences: 3902068 Number of extensions: 5415385 Number of successful extensions: 125523 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125126 Number of HSP's gapped (non-prelim): 385 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
