ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet48c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase... 40 1.6
2gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock ... 40 1.6
3emb|CR931814.13| Zebrafish DNA sequence from clone DKEY-236E8 in... 38 6.2
4emb|AL391707.9| Human DNA sequence from clone RP11-166B18 on chr... 38 6.2
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
6dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
7emb|BX001023.12| Zebrafish DNA sequence from clone CH211-233F10 ... 38 6.2
8gb|AC132438.3| Mus musculus BAC clone RP23-234G15 from 3, comple... 38 6.2

>ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase (DDB0231482),
           partial mRNA
          Length = 1770

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  acaaatcttacaagatttca 56
           ||||||||||||||||||||
Sbjct: 339 acaaatcttacaagatttca 358



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>gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock protein 16.9
           (hsp16.9-17LC3) mRNA, partial cds
          Length = 440

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 106 actaaatgaacaaaccggaagcga 129
           ||||||||||||||| ||||||||
Sbjct: 299 actaaatgaacaaacaggaagcga 322



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>emb|CR931814.13| Zebrafish DNA sequence from clone DKEY-236E8 in linkage group 5, complete
              sequence
          Length = 155089

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 13     accccttccatagccactg 31
              |||||||||||||||||||
Sbjct: 124828 accccttccatagccactg 124810



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>emb|AL391707.9| Human DNA sequence from clone RP11-166B18 on chromosome 10, complete
              sequence
          Length = 166826

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     ttccatagccactggatat 36
              |||||||||||||||||||
Sbjct: 131264 ttccatagccactggatat 131246



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 104     ccactaaatgaacaaaccggaag 126
               |||||||||||||||||| ||||
Sbjct: 1972322 ccactaaatgaacaaacctgaag 1972344



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>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0495H05
          Length = 205595

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 104   ccactaaatgaacaaaccggaag 126
             |||||||||||||||||| ||||
Sbjct: 56619 ccactaaatgaacaaacctgaag 56641



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>emb|BX001023.12| Zebrafish DNA sequence from clone CH211-233F10 in linkage group 5,
            complete sequence
          Length = 168064

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   accccttccatagccactg 31
            |||||||||||||||||||
Sbjct: 7619 accccttccatagccactg 7637



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>gb|AC132438.3| Mus musculus BAC clone RP23-234G15 from 3, complete sequence
          Length = 180660

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 19    tccatagccactggatatacaaa 41
             ||||||||||||| |||||||||
Sbjct: 95161 tccatagccactgcatatacaaa 95183


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 776,614
Number of Sequences: 3902068
Number of extensions: 776614
Number of successful extensions: 52116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52093
Number of HSP's gapped (non-prelim): 23
length of query: 132
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 111
effective length of database: 17,151,101,840
effective search space: 1903772304240
effective search space used: 1903772304240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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