ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet48b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191929.1| Oryza sativa (japonica cultivar-group), predic... 174 2e-40
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
3dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
4gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome... 105 1e-19
5emb|Y18348.1|OSA18348 Oryza sativa mRNA for U2 snRNP auxiliary f... 105 1e-19
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
7dbj|AK104767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
8dbj|AK070198.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
9gb|AY104397.1| Zea mays PCO152838 mRNA sequence 76 1e-10
10gb|DQ019634.1| Triticum aestivum U2AF small subunit mRNA, comple... 44 0.37
11gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, c... 42 1.5
12gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.5
13ref|XM_472720.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
14gb|AC131997.23| Mus musculus chromosome 15, clone RP23-381H9, co... 40 5.8
15gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 5.8
16ref|XM_676804.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.8
17gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 5.8
18gb|AC123858.4| Mus musculus BAC clone RP23-345K19 from chromosom... 40 5.8
19emb|AL160058.8| Human DNA sequence from clone RP11-280O1 on chro... 40 5.8
20emb|AL137800.12| Human DNA sequence from clone RP1-127C7 on chro... 40 5.8
21emb|AL133261.8| Human DNA sequence from clone RP1-293E23 on chro... 40 5.8
22emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4,... 40 5.8
23emb|AL954353.14| Mouse DNA sequence from clone RP23-156D8 on chr... 40 5.8
24gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cance... 40 5.8
25dbj|AK141704.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 5.8
26gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 5.8
27gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 5.8
28dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
29gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, co... 40 5.8
30gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome... 40 5.8
31gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 40 5.8
32dbj|AK120652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
33gb|AC155284.7| Mus musculus 6 BAC RP23-241L3 (Roswell Park Cance... 40 5.8
34gb|DQ314879.1| Homo sapiens neutrophil cytosolic factor 2 (65kDa... 40 5.8
35gb|AF000429.1|AF000429 Shuttle cosmid vector pFD666, complete se... 40 5.8
36gb|U23762.1|SPU23762 Streptomyces phaeochromogenes plasmid pJV1,... 40 5.8 
>ref|NM_191929.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2106

 Score =  174 bits (88), Expect = 2e-40
 Identities = 133/148 (89%)
 Strand = Plus / Minus

                                                                       
Query: 156 tccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcaca 215
           ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || 
Sbjct: 754 tccctttcacgattccactgttcgatcttggccctgcgctcctcgctgctctccctgact 695

                                                                       
Query: 216 gggcttcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatgc 275
           || || || |||||||| |||||||| || || | |||||||||||||||||| ||||||
Sbjct: 694 ggactcctcgcacgccttggagggctaccaccgtgcctacgccttcctccatcatcatgc 635

                                       
Query: 276 ctttcatgcctgctgctcccacccctcc 303
           |||||||| |||||||| ||||||||||
Sbjct: 634 ctttcatgtctgctgcttccacccctcc 607



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                       
Query: 337 aatcatcacggccacgatagtcatcacggtcacgacgctctctcctgtggtgtgggcttg 396
           |||| ||||| || |||||||||||||| ||| | ||||| ||||| ||| |||||||||
Sbjct: 588 aatcgtcacgtcctcgatagtcatcacgatcatgtcgctccctcctatggcgtgggcttg 529

               
Query: 397 ggct 400
           ||||
Sbjct: 528 ggct 525



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 389 tgggcttgggctgcggcttcttcctcgttg 418
           |||||||||||||||||| || ||||||||
Sbjct: 530 tgggcttgggctgcggctcctgcctcgttg 501
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  174 bits (88), Expect = 2e-40
 Identities = 133/148 (89%)
 Strand = Plus / Plus

                                                                            
Query: 156      tccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcaca 215
                ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || 
Sbjct: 27310830 tccctttcacgattccactgttcgatcttggccctgcgctcctcgctgctctccctgact 27310889

                                                                            
Query: 216      gggcttcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatgc 275
                || || || |||||||| |||||||| || || | |||||||||||||||||| ||||||
Sbjct: 27310890 ggactcctcgcacgccttggagggctaccaccgtgcctacgccttcctccatcatcatgc 27310949

                                            
Query: 276      ctttcatgcctgctgctcccacccctcc 303
                |||||||| |||||||| ||||||||||
Sbjct: 27310950 ctttcatgtctgctgcttccacccctcc 27310977



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                            
Query: 337      aatcatcacggccacgatagtcatcacggtcacgacgctctctcctgtggtgtgggcttg 396
                |||| ||||| || |||||||||||||| ||| | ||||| ||||| ||| |||||||||
Sbjct: 27310996 aatcgtcacgtcctcgatagtcatcacgatcatgtcgctccctcctatggcgtgggcttg 27311055

                    
Query: 397      ggct 400
                ||||
Sbjct: 27311056 ggct 27311059



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 389      tgggcttgggctgcggcttcttcctcgttg 418
                |||||||||||||||||| || ||||||||
Sbjct: 27311054 tgggcttgggctgcggctcctgcctcgttg 27311083
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>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0063G05
          Length = 182681

 Score =  174 bits (88), Expect = 2e-40
 Identities = 133/148 (89%)
 Strand = Plus / Plus

                                                                         
Query: 156   tccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcaca 215
             ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || 
Sbjct: 91347 tccctttcacgattccactgttcgatcttggccctgcgctcctcgctgctctccctgact 91406

                                                                         
Query: 216   gggcttcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatgc 275
             || || || |||||||| |||||||| || || | |||||||||||||||||| ||||||
Sbjct: 91407 ggactcctcgcacgccttggagggctaccaccgtgcctacgccttcctccatcatcatgc 91466

                                         
Query: 276   ctttcatgcctgctgctcccacccctcc 303
             |||||||| |||||||| ||||||||||
Sbjct: 91467 ctttcatgtctgctgcttccacccctcc 91494



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                         
Query: 337   aatcatcacggccacgatagtcatcacggtcacgacgctctctcctgtggtgtgggcttg 396
             |||| ||||| || |||||||||||||| ||| | ||||| ||||| ||| |||||||||
Sbjct: 91513 aatcgtcacgtcctcgatagtcatcacgatcatgtcgctccctcctatggcgtgggcttg 91572

                 
Query: 397   ggct 400
             ||||
Sbjct: 91573 ggct 91576



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 389   tgggcttgggctgcggcttcttcctcgttg 418
             |||||||||||||||||| || ||||||||
Sbjct: 91571 tgggcttgggctgcggctcctgcctcgttg 91600
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>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0053D02, complete sequence
          Length = 157106

 Score =  105 bits (53), Expect = 1e-19
 Identities = 124/147 (84%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                         
Query: 155   ctccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcac 214
             ||||| |||||| ||||||||||| ||||| |||||||| || |||||| | ||||| ||
Sbjct: 92687 ctcccgttcacggttccactgttcaatcttcgccctgcgttcctcgctgctttccctgac 92628

                                                                         
Query: 215   agggcttcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatg 274
              ||||| ||||||||||| || ||||||   |||| ||| |||||||||||||| |||| 
Sbjct: 92627 tgggctccttgcacgccttggggggctg---ccatgcctgcgccttcctccatcatcata 92571

                                        
Query: 275   cctttcatgcctgctgctcccacccct 301
             ||| |||| |||||||| |||||||||
Sbjct: 92570 cctgtcatacctgctgcccccacccct 92544



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 357   tcatcacggtcacgacgctctctcctgtggtgtgggcttgggctgcggcttct 409
             |||||||||||||||    | ||||||||| ||||||||||||||||||||||
Sbjct: 92419 tcatcacggtcacgattgcccctcctgtggcgtgggcttgggctgcggcttct 92367
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>emb|Y18348.1|OSA18348 Oryza sativa mRNA for U2 snRNP auxiliary factor, small subunit 35b
          Length = 1289

 Score =  105 bits (53), Expect = 1e-19
 Identities = 124/147 (84%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 155  ctccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcac 214
            ||||| |||||| ||||||||||| ||||| |||||||| || |||||| | ||||| ||
Sbjct: 1038 ctcccgttcacggttccactgttcaatcttcgccctgcgttcctcgctgctttccctgac 979

                                                                        
Query: 215  agggcttcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatg 274
             ||||| ||||||||||| || ||||||   |||| ||| |||||||||||||| |||| 
Sbjct: 978  tgggctccttgcacgccttggggggctg---ccatgcctgcgccttcctccatcatcata 922

                                       
Query: 275  cctttcatgcctgctgctcccacccct 301
            ||| |||| |||||||| |||||||||
Sbjct: 921  cctgtcatacctgctgcccccacccct 895



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 357 tcatcacggtcacgacgctctctcctgtggtgtgggcttgggctgcggcttct 409
           |||||||||||||||    | ||||||||| ||||||||||||||||||||||
Sbjct: 770 tcatcacggtcacgattgcccctcctgtggcgtgggcttgggctgcggcttct 718
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  105 bits (53), Expect = 1e-19
 Identities = 124/147 (84%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                            
Query: 155      ctccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcac 214
                ||||| |||||| ||||||||||| ||||| |||||||| || |||||| | ||||| ||
Sbjct: 27862270 ctcccgttcacggttccactgttcaatcttcgccctgcgttcctcgctgctttccctgac 27862211

                                                                            
Query: 215      agggcttcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatg 274
                 ||||| ||||||||||| || ||||||   |||| ||| |||||||||||||| |||| 
Sbjct: 27862210 tgggctccttgcacgccttggggggctg---ccatgcctgcgccttcctccatcatcata 27862154

                                           
Query: 275      cctttcatgcctgctgctcccacccct 301
                ||| |||| |||||||| |||||||||
Sbjct: 27862153 cctgtcatacctgctgcccccacccct 27862127



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 357      tcatcacggtcacgacgctctctcctgtggtgtgggcttgggctgcggcttct 409
                |||||||||||||||    | ||||||||| ||||||||||||||||||||||
Sbjct: 27862002 tcatcacggtcacgattgcccctcctgtggcgtgggcttgggctgcggcttct 27861950
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>dbj|AK104767.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A01, full
            insert sequence
          Length = 1287

 Score =  105 bits (53), Expect = 1e-19
 Identities = 124/147 (84%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 155  ctccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcac 214
            ||||| |||||| ||||||||||| ||||| |||||||| || |||||| | ||||| ||
Sbjct: 1034 ctcccgttcacggttccactgttcaatcttcgccctgcgttcctcgctgctttccctgac 975

                                                                        
Query: 215  agggcttcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatg 274
             ||||| ||||||||||| || ||||||   |||| ||| |||||||||||||| |||| 
Sbjct: 974  tgggctccttgcacgccttggggggctg---ccatgcctgcgccttcctccatcatcata 918

                                       
Query: 275  cctttcatgcctgctgctcccacccct 301
            ||| |||| |||||||| |||||||||
Sbjct: 917  cctgtcatacctgctgcccccacccct 891



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 357 tcatcacggtcacgacgctctctcctgtggtgtgggcttgggctgcggcttct 409
           |||||||||||||||    | ||||||||| ||||||||||||||||||||||
Sbjct: 766 tcatcacggtcacgattgcccctcctgtggcgtgggcttgggctgcggcttct 714
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>dbj|AK070198.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B11, full
            insert sequence
          Length = 1309

 Score =  105 bits (53), Expect = 1e-19
 Identities = 124/147 (84%), Gaps = 3/147 (2%)
 Strand = Plus / Minus

                                                                        
Query: 155  ctccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcac 214
            ||||| |||||| ||||||||||| ||||| |||||||| || |||||| | ||||| ||
Sbjct: 1045 ctcccgttcacggttccactgttcaatcttcgccctgcgttcctcgctgctttccctgac 986

                                                                        
Query: 215  agggcttcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatg 274
             ||||| ||||||||||| || ||||||   |||| ||| |||||||||||||| |||| 
Sbjct: 985  tgggctccttgcacgccttggggggctg---ccatgcctgcgccttcctccatcatcata 929

                                       
Query: 275  cctttcatgcctgctgctcccacccct 301
            ||| |||| |||||||| |||||||||
Sbjct: 928  cctgtcatacctgctgcccccacccct 902



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 357 tcatcacggtcacgacgctctctcctgtggtgtgggcttgggctgcggcttct 409
           |||||||||||||||    | ||||||||| ||||||||||||||||||||||
Sbjct: 777 tcatcacggtcacgattgcccctcctgtggcgtgggcttgggctgcggcttct 725
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>gb|AY104397.1| Zea mays PCO152838 mRNA sequence
          Length = 653

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 106/128 (82%), Gaps = 3/128 (2%)
 Strand = Plus / Minus

                                                                       
Query: 161 ttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcacagggct 220
           |||||| |||||||| || ||||||||||| ||||| |||||| | ||||| || |||||
Sbjct: 208 ttcacggttccactgctcaatcttggcccttcgctcctcgctgctttccctgactgggct 149

                                                                       
Query: 221 tcttgcacgcctcggagggctgcctccatacctacgccttcctccatcgtcatgcctttc 280
            ||||||||||| || |||||    |||| ||| |||||||||||||| |||| ||| ||
Sbjct: 148 ccttgcacgccttggggggct---accatgcctgcgccttcctccatcatcatacctgtc 92

                   
Query: 281 atgcctgc 288
           ||| ||||
Sbjct: 91  atgtctgc 84
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>gb|DQ019634.1| Triticum aestivum U2AF small subunit mRNA, complete cds
          Length = 1199

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 155 ctccctttcacgattccactgttcgatcttggccctgcgctcttcgctgttctccctcac 214
           |||||||||||| |||||||| || ||||| ||||| | ||| ||||||  |||||| ||
Sbjct: 867 ctccctttcacggttccactgctcaatcttcgccctcctctcctcgctgccctccctgac 808

                 
Query: 215 agggct 220
            |||||
Sbjct: 807 ggggct 802
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>gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, complete sequence
          Length = 209109

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 280    catgcctgctgctcccacccc 300
              |||||||||||||||||||||
Sbjct: 162164 catgcctgctgctcccacccc 162184
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 334     ggaaatcatcacggccacgat 354
               |||||||||||||||||||||
Sbjct: 2064332 ggaaatcatcacggccacgat 2064312
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>ref|XM_472720.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 389 tgggcttgggctgcggcttcttcc 412
           ||||||||||| ||||||||||||
Sbjct: 250 tgggcttgggcagcggcttcttcc 227
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>gb|AC131997.23| Mus musculus chromosome 15, clone RP23-381H9, complete sequence
          Length = 194206

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    tcgctgttctccctcacagg 217
              ||||||||||||||||||||
Sbjct: 122633 tcgctgttctccctcacagg 122652
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>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    aaattacatgaacagaacag 57
             ||||||||||||||||||||
Sbjct: 94560 aaattacatgaacagaacag 94579
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>ref|XM_676804.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8627.2), mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 210  ctcacagggcttcttgcacgcctc 233
            ||||||| ||||||||||||||||
Sbjct: 1179 ctcacagagcttcttgcacgcctc 1156
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>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    aaattacatgaacagaacag 57
             ||||||||||||||||||||
Sbjct: 81152 aaattacatgaacagaacag 81171
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>gb|AC123858.4| Mus musculus BAC clone RP23-345K19 from chromosome 15, complete sequence
          Length = 203182

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ttttaaagtctcattctgaa 30
              ||||||||||||||||||||
Sbjct: 134278 ttttaaagtctcattctgaa 134297
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>emb|AL160058.8| Human DNA sequence from clone RP11-280O1 on chromosome 1 Contains the
             5' end of the LMX1A gene for alpha LIM homeobox
             transcription factor 1, the RXRG gene for gamma retinoid X
             receptor, the 3' end of a novel gene (FLJ35813) and two
             CpG islands, complete sequence
          Length = 155369

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   tgcctgctgctcccacccct 301
             ||||||||||||||||||||
Sbjct: 83358 tgcctgctgctcccacccct 83377
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>emb|AL137800.12| Human DNA sequence from clone RP1-127C7 on chromosome 1q25.1-31.1
             Contains the 3' end of the C1orf16 gene for chromosome 1
             open reading frame 16, the NCF2 gene for neutrophil
             cytosolic factor 2 (65kDa, chronic granulomatous disease,
             autosomal 2), a novel gene, the ARPC5 gene for actin
             related protein 2/3 complex subunit 5 (16kDa), the 5' end
             of the RGL1 gene for ral guanine nucleotide dissociation
             stimulator-like 1, a novel gene (MGC26594) and a CpG
             island, complete sequence
          Length = 185832

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   atgcctgctgctcccacccc 300
             ||||||||||||||||||||
Sbjct: 79476 atgcctgctgctcccacccc 79457
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>emb|AL133261.8| Human DNA sequence from clone RP1-293E23 on chromosome 6, complete
            sequence
          Length = 66219

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   aaattacatgaacagaacag 57
            ||||||||||||||||||||
Sbjct: 8145 aaattacatgaacagaacag 8164
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>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15,
              complete sequence
          Length = 143109

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 389    tgggcttgggctgcggcttcttcc 412
              ||||||||||| ||||||||||||
Sbjct: 117508 tgggcttgggcagcggcttcttcc 117531
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>emb|AL954353.14| Mouse DNA sequence from clone RP23-156D8 on chromosome 11 Contains a
             pseudogene similar to part of striatin (calmodulin binding
             protein) (Strn), complete sequence
          Length = 188920

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cagaacagcaaatcaatagt 69
             ||||||||||||||||||||
Sbjct: 18171 cagaacagcaaatcaatagt 18152
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>gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190237

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   tcatgcctttcatgcctgct 289
             ||||||||||||||||||||
Sbjct: 15877 tcatgcctttcatgcctgct 15896
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>dbj|AK141704.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030034I06
            product:unclassifiable, full insert sequence
          Length = 3403

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   aaattacatgaacagaacag 57
            ||||||||||||||||||||
Sbjct: 2394 aaattacatgaacagaacag 2413
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>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    aaattacatgaacagaacag 57
             ||||||||||||||||||||
Sbjct: 82862 aaattacatgaacagaacag 82881
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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 393     cttgggctgcggcttcttcc 412
               ||||||||||||||||||||
Sbjct: 5636573 cttgggctgcggcttcttcc 5636554



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 393     cttgggctgcggcttcttcc 412
               ||||||||||||||||||||
Sbjct: 2929808 cttgggctgcggcttcttcc 2929789
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 389      tgggcttgggctgcggcttcttcc 412
                ||||||||||| ||||||||||||
Sbjct: 22780312 tgggcttgggcagcggcttcttcc 22780335
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>gb|AC133574.15| Mus musculus strain C57BL/6J clone rp23-35b9, complete sequence
          Length = 168432

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    aaattacatgaacagaacag 57
             ||||||||||||||||||||
Sbjct: 13081 aaattacatgaacagaacag 13100
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>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete sequence
          Length = 237233

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 204   ttctccctcacagggcttcttgca 227
             |||||||||||| |||||||||||
Sbjct: 30986 ttctccctcacatggcttcttgca 31009
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>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 204  ttctccctcacagggcttcttgca 227
            |||||||||||| |||||||||||
Sbjct: 6908 ttctccctcacatggcttcttgca 6885
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>dbj|AK120652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157E03, full
           insert sequence
          Length = 1543

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 389 tgggcttgggctgcggcttcttcc 412
           ||||||||||| ||||||||||||
Sbjct: 361 tgggcttgggcagcggcttcttcc 338
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>gb|AC155284.7| Mus musculus 6 BAC RP23-241L3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 205924

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   tcatgcctttcatgcctgct 289
             ||||||||||||||||||||
Sbjct: 49797 tcatgcctttcatgcctgct 49816
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>gb|DQ314879.1| Homo sapiens neutrophil cytosolic factor 2 (65kDa, chronic
             granulomatous disease, autosomal 2) (NCF2) gene, complete
             cds
          Length = 38637

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   atgcctgctgctcccacccc 300
             ||||||||||||||||||||
Sbjct: 13254 atgcctgctgctcccacccc 13273
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>gb|AF000429.1|AF000429 Shuttle cosmid vector pFD666, complete sequence
          Length = 5251

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  gcttcttgcacgcctcggag 237
            ||||||||||||||||||||
Sbjct: 3009 gcttcttgcacgcctcggag 2990
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>gb|U23762.1|SPU23762 Streptomyces phaeochromogenes plasmid pJV1, complete sequence
          Length = 11143

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 218  gcttcttgcacgcctcggag 237
            ||||||||||||||||||||
Sbjct: 3314 gcttcttgcacgcctcggag 3295


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,300,523
Number of Sequences: 3902068
Number of extensions: 3300523
Number of successful extensions: 78910
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78724
Number of HSP's gapped (non-prelim): 175
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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