>RL39_PYRKO (Q5JGT6) 50S ribosomal protein L39e|
          Length = 51

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 57  LPLWGIVHVKRKVDRHQPKRNRWKDTR 137
           +P+W IV   RKV  H PKR  W+ T+
Sbjct: 23  VPVWVIVKTNRKVITH-PKRRHWRRTK 48

>PHF12_HUMAN (Q96QT6) PHD finger protein 12 (PHD factor 1) (Pf1)|
          Length = 1004

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
 Frame = +2

Query: 41  HESCAFAPLGHSTCETKSRQTPTKTKQMERHETLFGNMPTTNALTT---------GLAQP 193
           H+S A   +G S+C  KS++TP  T     +  +  N P   +  T         G   P
Sbjct: 512 HQSPALEDIGCSSCAEKSKKTPCGTANGPVNTEVKANGPHLYSSPTDSTDPRRLPGANTP 571

Query: 194 QAGIPAAVGQPHPL 235
             G+    G P PL
Sbjct: 572 LPGLSHRQGWPRPL 585

>YXT2_CAEEL (Q18078) Hypothetical protein C18B2.2|
          Length = 356

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 71  HSTCETKSRQTPTKTKQMERHETLFGNMPTTNALTTGLAQPQ 196
           +S   + +   PTK KQM+   +L+ NM    A  + + QP+
Sbjct: 39  YSISNSNTDDAPTKKKQMKAFFSLYHNMDELKAQNSDVVQPR 80

>Y589_MYCPN (Q50338) Hypothetical protein MPN589 (D02_orf157L)|
          Length = 157

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +2

Query: 107 TKTKQMERHETLFGNMPTTNALTTGLAQPQAGIPAAVGQPHPLLFSHFPNQ 259
           TKT+Q   H+  +G+MPT   LT  L Q   G P A  + H    + F N+
Sbjct: 17  TKTEQRFNHDDFYGSMPT---LTKNLRQ---GQPVAGSKVHTDYSNGFLNE 61

>GRPR_RAT (P52500) Gastrin-releasing peptide receptor (GRP-R) (GRP-preferring|
           bombesin receptor)
          Length = 384

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 6   SVYYSGHARQYVMNHAPLPLWGIVHVKRKVD 98
           SVYY   AR  + +   LP+ G +HVK++++
Sbjct: 228 SVYYYFIARNLIQSAYNLPVEGNIHVKKQIE 258

>GRPR_MOUSE (P21729) Gastrin-releasing peptide receptor (GRP-R) (GRP-preferring|
           bombesin receptor)
          Length = 384

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 6   SVYYSGHARQYVMNHAPLPLWGIVHVKRKVD 98
           SVYY   AR  + +   LP+ G +HVK++++
Sbjct: 228 SVYYYFIARNLIQSAYNLPVEGNIHVKKQIE 258

>RL39_METMA (Q8PYQ5) 50S ribosomal protein L39e|
          Length = 51

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 57  LPLWGIVHVKRKVDRHQPKRNRWK 128
           +P+W IV   RKV  H P+R  W+
Sbjct: 22  VPVWAIVKTNRKVVSH-PRRRHWR 44

>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 146 GNMPTTNALTTGLAQPQAGIPAAVGQP 226
           GN P T+  +TG+A+PQA  P    +P
Sbjct: 215 GNNPFTSGGSTGMARPQAPRPGGAPRP 241

>TLR5_MOUSE (Q9JLF7) Toll-like receptor 5 precursor|
          Length = 859

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 136 LVSFHLFRFGWCLSTFRF 83
           LVS H  + GWCL  FR+
Sbjct: 758 LVSRHFLKDGWCLEAFRY 775


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,255,662
Number of Sequences: 219361
Number of extensions: 938945
Number of successful extensions: 2549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2549
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)