ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet47f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478377.1| Oryza sativa (japonica cultivar-group), mRNA 230 3e-57
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 230 3e-57
3dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 230 3e-57
4dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 230 3e-57
5dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 3e-57
6dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 3e-57
7dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 3e-57
8gb|AY108268.1| Zea mays PCO078526 mRNA sequence 198 9e-48
9gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Can... 48 0.020
10gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, comple... 44 0.32
11gb|U88181.1| Caenorhabditis elegans cosmid C55B6, complete sequence 42 1.3
12gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
13gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 42 1.3
14gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosom... 42 1.3
15emb|AL158817.11| Human DNA sequence from clone RP3-429O6 on chro... 42 1.3
16gb|AY267622.1| Bigelowiella natans ATP synthase gamma subunit mR... 42 1.3
17gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Can... 42 1.3
18gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, comple... 42 1.3
19gb|AC107365.2| Danio rerio, clone -241I7, complete sequence 42 1.3
20dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
21gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, c... 42 1.3
22emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in... 42 1.3
23gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete... 42 1.3
24gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.18... 42 1.3
25gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 5.0
26gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome ... 40 5.0
27gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate h... 40 5.0
28emb|Z81119.1|CET10H4 Caenorhabditis elegans Cosmid T10H4, comple... 40 5.0
29gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, compl... 40 5.0
30gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's... 40 5.0
31emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chr... 40 5.0
32gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.0
33gb|AC154570.2| Mus musculus BAC clone RP23-385M5 from chromosome... 40 5.0
34gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete... 40 5.0
35emb|AL929280.6| Mouse DNA sequence from clone RP23-67M20 on chro... 40 5.0
36emb|AL663060.6| Mouse DNA sequence from clone RP23-239H6 on chro... 40 5.0
37gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, com... 40 5.0
38gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, comp... 40 5.0
39gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cance... 40 5.0
40gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Canc... 40 5.0
41dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, ... 40 5.0
42gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequ... 40 5.0
43gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, co... 40 5.0
44dbj|AK051229.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 5.0
45gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-223... 40 5.0
46dbj|AK037782.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 5.0
47dbj|AK043901.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 5.0
48dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
49dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
50gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, comple... 40 5.0
51emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chr... 40 5.0
52dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
53dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
54dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
55dbj|AK121910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
56dbj|AK101846.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
57gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, com... 40 5.0
58emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chrom... 40 5.0
59dbj|AB032374.1| Mus musculus gene for Tbr1, 5' flanking region 40 5.0
60dbj|AB015309.1| Acidovorax sp. TP4 gene for PHB depolymerase, co... 40 5.0 
>ref|XM_478377.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1469

 Score =  230 bits (116), Expect = 3e-57
 Identities = 167/184 (90%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1119 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1060

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1059 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1000

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 999  atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 940

                
Query: 370  tggc 373
            ||||
Sbjct: 939  tggc 936
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  230 bits (116), Expect = 3e-57
 Identities = 167/184 (90%)
 Strand = Plus / Plus

                                                                            
Query: 190      agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
                |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 19602762 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 19602821

                                                                            
Query: 250      cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
                || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 19602822 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 19602881

                                                                            
Query: 310      atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
                ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 19602882 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 19602941

                    
Query: 370      tggc 373
                ||||
Sbjct: 19602942 tggc 19602945
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>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score =  230 bits (116), Expect = 3e-57
 Identities = 167/184 (90%)
 Strand = Plus / Plus

                                                                          
Query: 190    agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
              |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 146106 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 146165

                                                                          
Query: 250    cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
              || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 146166 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 146225

                                                                          
Query: 310    atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
              ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 146226 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 146285

                  
Query: 370    tggc 373
              ||||
Sbjct: 146286 tggc 146289
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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score =  230 bits (116), Expect = 3e-57
 Identities = 167/184 (90%)
 Strand = Plus / Plus

                                                                         
Query: 190   agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
             |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 41412 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 41471

                                                                         
Query: 250   cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
             || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 41472 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 41531

                                                                         
Query: 310   atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
             ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 41532 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 41591

                 
Query: 370   tggc 373
             ||||
Sbjct: 41592 tggc 41595
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>dbj|AK105071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C11, full
            insert sequence
          Length = 2822

 Score =  230 bits (116), Expect = 3e-57
 Identities = 167/184 (90%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 2584 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 2525

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 2524 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 2465

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 2464 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 2405

                
Query: 370  tggc 373
            ||||
Sbjct: 2404 tggc 2401
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>dbj|AK072104.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116B21, full
            insert sequence
          Length = 1470

 Score =  230 bits (116), Expect = 3e-57
 Identities = 167/184 (90%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1119 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1060

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1059 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1000

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 999  atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 940

                
Query: 370  tggc 373
            ||||
Sbjct: 939  tggc 936
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>dbj|AK064835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F20, full
            insert sequence
          Length = 1482

 Score =  230 bits (116), Expect = 3e-57
 Identities = 167/184 (90%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||
Sbjct: 1224 agggcgtcggcgccggcgacgatctcgaggatctcgccggtgatcttggcctggcgctgg 1165

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || ||||||||||||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1164 cggttgtagaccatggagaggttcttccggagctcgatggcgttgtcggtggcgctgctc 1105

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||
Sbjct: 1104 atggcgctcatcctggcggcgagctcgctggcgagcgactcctggagcgcgcggaggatc 1045

                
Query: 370  tggc 373
            ||||
Sbjct: 1044 tggc 1041
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>gb|AY108268.1| Zea mays PCO078526 mRNA sequence
          Length = 1437

 Score =  198 bits (100), Expect = 9e-48
 Identities = 163/184 (88%)
 Strand = Plus / Minus

                                                                        
Query: 190  agggcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcgtcgg 249
            ||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||  | 
Sbjct: 1168 agggcgtcggcaccggcgacgatctcgaggatctccccggtgatcttggcctggcgctgt 1109

                                                                        
Query: 250  cgattgtagaccatggagagattttttcggagatcgatggcattgtctgtggcgctgctc 309
            || |||||| | |||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1108 cggttgtaggcgatggagaggttcttgcggagctcgatggcgttgtcggtggcgctgctc 1049

                                                                        
Query: 310  atggcgctcatcctggctgcgagctcgctagcgagcgactcctggagggcacgcaggatc 369
            ||||||||||||| ||| ||||||||||| |||||||||||||| |||||||| ||||||
Sbjct: 1048 atggcgctcatccgggcggcgagctcgctggcgagcgactcctgcagggcacggaggatc 989

                
Query: 370  tggc 373
            ||||
Sbjct: 988  tggc 985
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>gb|AC087888.12| Homo sapiens 12 BAC RP11-228G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 87788

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 130   aaggaggcaaagagttatatataa 153
             ||||||||||||||||||||||||
Sbjct: 75558 aaggaggcaaagagttatatataa 75535
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>gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, complete sequence
          Length = 118022

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 80   tacaaacacagacacagaccaa 101
            ||||||||||||||||||||||
Sbjct: 7121 tacaaacacagacacagaccaa 7142
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>gb|U88181.1| Caenorhabditis elegans cosmid C55B6, complete sequence
          Length = 25003

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    tgagaaattattacaaacaca 89
             |||||||||||||||||||||
Sbjct: 19896 tgagaaattattacaaacaca 19876
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>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05,
              complete sequence
          Length = 153368

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 116    agaagagaggagaaaaggagg 136
              |||||||||||||||||||||
Sbjct: 140157 agaagagaggagaaaaggagg 140177
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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   agaagagaggagaaaaggagg 136
             |||||||||||||||||||||
Sbjct: 15174 agaagagaggagaaaaggagg 15194
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>gb|AC125536.3| Mus musculus BAC clone RP24-142N21 from chromosome 8, complete
            sequence
          Length = 199356

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 116  agaagagaggagaaaaggagg 136
            |||||||||||||||||||||
Sbjct: 3705 agaagagaggagaaaaggagg 3685
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>emb|AL158817.11| Human DNA sequence from clone RP3-429O6 on chromosome 6 Contains part
             of a novel gene and a CpG island, complete sequence
          Length = 120529

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 119   agagaggagaaaaggaggcaaagag 143
             |||||||||||||||||| ||||||
Sbjct: 57721 agagaggagaaaaggaggaaaagag 57697
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>gb|AY267622.1| Bigelowiella natans ATP synthase gamma subunit mRNA, complete cds;
            nuclear gene for plastid product
          Length = 1351

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 193  gcgtcggcgccagcgacgatctcaaggatctctccggtgatcttggcctggcg 245
            ||||| || ||||||||||||||||| || ||   ||||||||| ||||||||
Sbjct: 1174 gcgtctgcaccagcgacgatctcaagaatttcattggtgatcttagcctggcg 1122
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>gb|AC068298.16| Homo sapiens 3 BAC RP11-496B10 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 120  gagaggagaaaaggaggcaaa 140
            |||||||||||||||||||||
Sbjct: 8264 gagaggagaaaaggaggcaaa 8244
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>gb|AC118139.3| Homo sapiens BAC clone RP11-461K12 from 4, complete sequence
          Length = 54171

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 agaagagaggagaaaaggagg 136
           |||||||||||||||||||||
Sbjct: 459 agaagagaggagaaaaggagg 479
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>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
          Length = 128411

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 116    agaagagaggagaaaaggagg 136
              |||||||||||||||||||||
Sbjct: 127553 agaagagaggagaaaaggagg 127533
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 116      agaagagaggagaaaaggagg 136
                |||||||||||||||||||||
Sbjct: 18346945 agaagagaggagaaaaggagg 18346965
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>gb|AF088219.1|AF088219 Homo sapiens CC chemokine gene cluster, complete sequence
          Length = 180919

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   gataagtactagaagagagga 126
             |||||||||||||||||||||
Sbjct: 90350 gataagtactagaagagagga 90330
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>emb|CR382300.12| Zebrafish DNA sequence from clone DKEY-25E11 in linkage group 19,
             complete sequence
          Length = 202006

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   agaagagaggagaaaaggagg 136
             |||||||||||||||||||||
Sbjct: 35716 agaagagaggagaaaaggagg 35736
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>gb|AC006572.2|AC006572 Homo sapiens, clone hRPK.60_A_1, complete sequence
          Length = 179691

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 116    agaagagaggagaaaaggagg 136
              |||||||||||||||||||||
Sbjct: 178150 agaagagaggagaaaaggagg 178170
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>gb|AC004675.1|AC004675 Homo sapiens chromosome 17, clone hCIT.186_H_2, complete sequence
          Length = 128501

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   gataagtactagaagagagga 126
             |||||||||||||||||||||
Sbjct: 88143 gataagtactagaagagagga 88163
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 302     cgctgctcatggcgctcatc 321
               ||||||||||||||||||||
Sbjct: 2764884 cgctgctcatggcgctcatc 2764903
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>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence
          Length = 169832

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     ttacaaacacagacacagac 98
              ||||||||||||||||||||
Sbjct: 134653 ttacaaacacagacacagac 134672
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>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6
              through 10 and partial cds
          Length = 688489

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     tacaaacacagacacagacc 99
              ||||||||||||||||||||
Sbjct: 401220 tacaaacacagacacagacc 401239
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>emb|Z81119.1|CET10H4 Caenorhabditis elegans Cosmid T10H4, complete sequence
          Length = 33319

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    agaaattattacaaacacag 90
             ||||||||||||||||||||
Sbjct: 12793 agaaattattacaaacacag 12812
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>gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, complete sequence
          Length = 232817

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   aggagaaaaggaggcaaaga 142
             ||||||||||||||||||||
Sbjct: 78802 aggagaaaaggaggcaaaga 78783
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>gb|AC118351.14| Rattus norvegicus 1 BAC CH230-362O18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 143705

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    ggagaaaaggaggcaaagag 143
              ||||||||||||||||||||
Sbjct: 125135 ggagaaaaggaggcaaagag 125116
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>emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chromosome 6 Contains a fem-1
              homolog a (C. elegans) (FEM1A) pseudogene, a keratin 18
              (KRT18) pseudogene, a laminin receptor 1 (67kD, ribosomal
              protein SA) (LAMR1)(RPSA) pseudogene, a hepatocellular
              carcinoma-related putative tumor suppressor (LPTS)
              pseudogene and the 3' end of a novel gene, complete
              sequence
          Length = 210107

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    tactagaagagaggagaaaa 131
              ||||||||||||||||||||
Sbjct: 191747 tactagaagagaggagaaaa 191728
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     cagggcgtcggcgccagcga 208
               ||||||||||||||||||||
Sbjct: 1196169 cagggcgtcggcgccagcga 1196188
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>gb|AC154570.2| Mus musculus BAC clone RP23-385M5 from chromosome 14, complete sequence
          Length = 209218

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     tacaaacacagacacagacc 99
              ||||||||||||||||||||
Sbjct: 108436 tacaaacacagacacagacc 108417
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>gb|AC006454.4| Homo sapiens PAC clone RP5-852P6 from 7, complete sequence
          Length = 153203

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gcagctcagcccagggagga 178
             ||||||||||||||||||||
Sbjct: 13876 gcagctcagcccagggagga 13857
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>emb|AL929280.6| Mouse DNA sequence from clone RP23-67M20 on chromosome 11 Contains a
              novel gene (2810471M01Rik), the 5' end of the gene for a
              novel protein (E030025D05Rik) and a CpG island, complete
              sequence
          Length = 216627

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     acacagacacagaccaagca 104
              ||||||||||||||||||||
Sbjct: 113992 acacagacacagaccaagca 113973
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>emb|AL663060.6| Mouse DNA sequence from clone RP23-239H6 on chromosome 11, complete
             sequence
          Length = 218635

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    acacagaccaagcaagataa 110
             ||||||||||||||||||||
Sbjct: 54294 acacagaccaagcaagataa 54275
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>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence
          Length = 181022

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   gaagagaggagaaaaggagg 136
             ||||||||||||||||||||
Sbjct: 27254 gaagagaggagaaaaggagg 27235
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>gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, complete sequence
          Length = 206801

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 121  agaggagaaaaggaggcaaagagt 144
            ||||||||||||||| ||||||||
Sbjct: 3628 agaggagaaaaggagtcaaagagt 3605
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>gb|AC092745.7| Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152599

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   ctcatggcgctcatcctggc 326
             ||||||||||||||||||||
Sbjct: 39643 ctcatggcgctcatcctggc 39624
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>gb|AC092111.9| Homo sapiens 12 BAC RP11-266K4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 138313

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    ctcatggcgctcatcctggc 326
              ||||||||||||||||||||
Sbjct: 114733 ctcatggcgctcatcctggc 114714
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>dbj|AB232920.1| Oryzias latipes hox gene cluster, complete cds, contains hoxBa, evx
             homologue on hoxBa
          Length = 235883

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   agaagagaggagaaaaggag 135
             ||||||||||||||||||||
Sbjct: 76918 agaagagaggagaaaaggag 76937
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>gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequence
          Length = 183894

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gaagagaggagaaaaggagg 136
             ||||||||||||||||||||
Sbjct: 48112 gaagagaggagaaaaggagg 48131
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>gb|AC122754.13| Mus musculus chromosome 1, clone RP24-510K10, complete sequence
          Length = 227950

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    gaaaaggaggcaaagagtta 146
              ||||||||||||||||||||
Sbjct: 105449 gaaaaggaggcaaagagtta 105468
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>dbj|AK051229.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130019J16
           product:unclassifiable, full insert sequence
          Length = 2020

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  ttacaaacacagacacagac 98
           ||||||||||||||||||||
Sbjct: 511 ttacaaacacagacacagac 492
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>gb|AC012336.9|AC012336 Homo sapiens chromosome 17, clone CTD-2236G12, complete sequence
          Length = 40405

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gaagagaggagaaaaggagg 136
             ||||||||||||||||||||
Sbjct: 10132 gaagagaggagaaaaggagg 10151
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>dbj|AK037782.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130049I01
           product:unclassifiable, full insert sequence
          Length = 1553

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  ttacaaacacagacacagac 98
           ||||||||||||||||||||
Sbjct: 649 ttacaaacacagacacagac 630
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>dbj|AK043901.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830048L15
           product:unclassifiable, full insert sequence
          Length = 1373

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 118 aagagaggagaaaaggaggcaaag 141
           |||||||||||| |||||||||||
Sbjct: 729 aagagaggagaagaggaggcaaag 706
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 80       tacaaacacagacacagacc 99
                ||||||||||||||||||||
Sbjct: 21304663 tacaaacacagacacagacc 21304682



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 51       acatccttttttgtgctatg 70
                ||||||||||||||||||||
Sbjct: 19087865 acatccttttttgtgctatg 19087846
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 114      ctagaagagaggagaaaagg 133
                ||||||||||||||||||||
Sbjct: 20600956 ctagaagagaggagaaaagg 20600937
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>gb|AC105916.4| Homo sapiens BAC clone RP11-180A12 from 4, complete sequence
          Length = 104269

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   ggcagctcagcccagggagg 177
             ||||||||||||||||||||
Sbjct: 81855 ggcagctcagcccagggagg 81874
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>emb|AL929073.19| Mouse DNA sequence from clone RP23-125D6 on chromosome 4, complete
             sequence
          Length = 129246

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   gaagagaggagaaaaggagg 136
             ||||||||||||||||||||
Sbjct: 16741 gaagagaggagaaaaggagg 16760
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>dbj|AP003714.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0656E03
          Length = 181786

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     tacaaacacagacacagacc 99
              ||||||||||||||||||||
Sbjct: 100039 tacaaacacagacacagacc 100058
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>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    acatccttttttgtgctatg 70
             ||||||||||||||||||||
Sbjct: 85349 acatccttttttgtgctatg 85330
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>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0051E21
          Length = 137959

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   ctagaagagaggagaaaagg 133
             ||||||||||||||||||||
Sbjct: 96514 ctagaagagaggagaaaagg 96495
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>dbj|AK121910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105O17, full
           insert sequence
          Length = 1563

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  acatccttttttgtgctatg 70
           ||||||||||||||||||||
Sbjct: 859 acatccttttttgtgctatg 840
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>dbj|AK101846.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069I17, full
           insert sequence
          Length = 3061

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  acatccttttttgtgctatg 70
           ||||||||||||||||||||
Sbjct: 865 acatccttttttgtgctatg 846
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>gb|AC154142.24| Mus musculus chromosome 1, clone RP23-187M7, complete sequence
          Length = 237824

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    gaaaaggaggcaaagagtta 146
              ||||||||||||||||||||
Sbjct: 188353 gaaaaggaggcaaagagtta 188372
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>emb|AL845291.5| Mouse DNA sequence from clone RP23-1O11 on chromosome 2, complete
              sequence
          Length = 209914

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 118    aagagaggagaaaaggaggcaaag 141
              |||||||||||| |||||||||||
Sbjct: 178379 aagagaggagaagaggaggcaaag 178356
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>dbj|AB032374.1| Mus musculus gene for Tbr1, 5' flanking region
          Length = 4570

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 118  aagagaggagaaaaggaggcaaag 141
            |||||||||||| |||||||||||
Sbjct: 3905 aagagaggagaagaggaggcaaag 3882
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>dbj|AB015309.1| Acidovorax sp. TP4 gene for PHB depolymerase, complete cds
          Length = 3846

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 298  gtggcgctgctcatggcgct 317
            ||||||||||||||||||||
Sbjct: 2294 gtggcgctgctcatggcgct 2313


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,557,825
Number of Sequences: 3902068
Number of extensions: 3557825
Number of successful extensions: 101111
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100806
Number of HSP's gapped (non-prelim): 306
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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