ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet47e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 48 0.024
2dbj|AP005357.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 48 0.024
3gb|AC019183.3|AC019183 Homo sapiens BAC clone RP11-291G24 from 1... 46 0.095
4gb|AC008109.6|AC008109 Homo sapiens chromosome 18, clone RP11-47... 46 0.095
5emb|BX530071.7| Zebrafish DNA sequence from clone CH211-189P14 i... 44 0.37
6gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cyto... 44 0.37
7emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chr... 44 0.37
8gb|AC161884.5| Mus musculus BAC clone RP23-77K23 from chromosome... 42 1.5
9gb|AC133890.16| Mus musculus chromosome 10, clone RP23-339N24, c... 42 1.5
10gb|AC115741.9| Mus musculus chromosome 14, clone RP23-476L2, com... 42 1.5
11gb|AC125147.4| Mus musculus BAC clone RP24-350A15 from chromosom... 42 1.5
12gb|AC122002.2| Mus musculus BAC clone RP24-335H15 from 7, comple... 42 1.5
13gb|U80439.1| Caenorhabditis elegans cosmid C01G8, complete sequence 42 1.5
14gb|AC012308.12| Homo sapiens chromosome 10 clone RP11-5G18, comp... 42 1.5
15gb|AC100322.8| Mus musculus chromosome 7, clone RP23-124O24, com... 42 1.5
16gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, co... 42 1.5
17gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, comp... 42 1.5
18gb|AC093445.4| Mus musculus strain C57BL/6J chromosome 1 clone r... 42 1.5
19gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome... 40 5.8
20gb|AF039048.2| Caenorhabditis elegans cosmid F16B4, complete seq... 40 5.8
21ref|XM_590924.2| PREDICTED: Bos taurus retinitis pigmentosa GTPa... 40 5.8
22ref|XM_360631.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.8
23ref|XM_718041.1| Candida albicans SC5314 putative peroxisomal sm... 40 5.8
24ref|XM_717894.1| Candida albicans SC5314 putative peroxisomal sm... 40 5.8
25gb|AC139223.8| Mus musculus chromosome 8, clone RP24-322F24, com... 40 5.8
26emb|CR974589.6| Mouse DNA sequence from clone RP23-77B14 on chro... 40 5.8
27gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome... 40 5.8
28gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosom... 40 5.8
29emb|Z35719.1|CEF17C8 Caenorhabditis elegans Cosmid F17C8, comple... 40 5.8
30gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complet... 40 5.8
31ref|XM_721403.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.8
32gb|AF039051.1| Caenorhabditis elegans cosmid C14C6, complete seq... 40 5.8
33emb|CR388365.9| Zebrafish DNA sequence from clone DKEY-24I24 in ... 40 5.8
34emb|AL353801.13| Human DNA sequence from clone RP11-285G1 on chr... 40 5.8
35emb|AL033375.2|HS21F7 Human DNA sequence from clone RP1-21F7 on ... 40 5.8
36emb|BX883046.1| Rattus norvegicus chromosome 20, major histocomp... 40 5.8
37emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chr... 40 5.8
38gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome... 40 5.8
39emb|CR384105.16| Zebrafish DNA sequence from clone CH211-186K13 ... 40 5.8
40emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on ch... 40 5.8
41gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence 40 5.8
42emb|BX530719.4| Zebrafish DNA sequence from clone DKEYP-51D11 in... 40 5.8
43gb|AC093816.3| Homo sapiens BAC clone RP11-364P2 from 4, complet... 40 5.8
44gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosom... 40 5.8
45ref|NM_071055.2| Caenorhabditis elegans Serpentine Receptor, cla... 40 5.8
46ref|NM_212462.1| Rattus norvegicus HLA-B associated transcript 2... 40 5.8
47gb|AC092947.12| Homo sapiens 3 BAC RP11-548O1 (Roswell Park Canc... 40 5.8
48gb|AF286474.1|AF286474 Bos taurus retinitis pigmentosa GTPase re... 40 5.8
49emb|BX293568.7| Zebrafish DNA sequence from clone CH211-215F13 i... 40 5.8
50emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chr... 40 5.8
51emb|CR848749.13| Zebrafish DNA sequence from clone CH211-147F13 ... 40 5.8
52gb|AC171917.14| Mus musculus chromosome 8, clone RP23-390K13, co... 40 5.8
53dbj|D14635.1|CELEMB5 Caenorhabditis elegans gene for EMB-5, comp... 40 5.8
54emb|AL929144.10| Mouse DNA sequence from clone RP23-441D24 on ch... 40 5.8
55emb|AL732330.14| Mouse DNA sequence from clone RP23-130L11 on ch... 40 5.8
56emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chro... 40 5.8
57emb|AL808111.4| Mouse DNA sequence from clone RP23-355J9 on chro... 40 5.8
58emb|AL928797.6| Mouse DNA sequence from clone RP23-178B19 on chr... 40 5.8
59emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chr... 40 5.8
60emb|AJ421481.1| Bos taurus X-inactivation center region, Jpx and... 40 5.8 
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 380    gcccacgccaggatcatgtcatgg 403
              ||||||||||||||||||||||||
Sbjct: 849301 gcccacgccaggatcatgtcatgg 849278
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>dbj|AP005357.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1299A7, complete
             sequence
          Length = 157708

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 8     aaattgttttgttttatttcaaag 31
             ||||||||||||||||||||||||
Sbjct: 45272 aaattgttttgttttatttcaaag 45295
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>gb|AC019183.3|AC019183 Homo sapiens BAC clone RP11-291G24 from 18, complete sequence
          Length = 183082

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 6     tgaaattgttttgttttatttca 28
             |||||||||||||||||||||||
Sbjct: 48417 tgaaattgttttgttttatttca 48395
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>gb|AC008109.6|AC008109 Homo sapiens chromosome 18, clone RP11-476K15, complete sequence
          Length = 166819

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 6    tgaaattgttttgttttatttca 28
            |||||||||||||||||||||||
Sbjct: 6447 tgaaattgttttgttttatttca 6469
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>emb|BX530071.7| Zebrafish DNA sequence from clone CH211-189P14 in linkage group 10,
              complete sequence
          Length = 148539

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 11     ttgttttgttttatttcaaagc 32
              ||||||||||||||||||||||
Sbjct: 123513 ttgttttgttttatttcaaagc 123492
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>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like
             protein, putative DNA-binding protein homolog,
             TATA-binding protein, hypothetical protein M3E9.200,
             3-glucanase, K-exchanger-like protein, small heat
             shock-like protein, methionine synthase protein, putative
             far-red impaired response protein, and putative vegetative
             storage protein genes, complete cds
          Length = 100773

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 273   tgcgcacctcctctcgcagcacggaggcgtctgccttggcctccac 318
             ||||||||||||| |||||||||| | |||| ||| | ||||||||
Sbjct: 99786 tgcgcacctcctcgcgcagcacggcgccgtccgcccttgcctccac 99831
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>emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chromosome X, complete
             sequence
          Length = 175057

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 5     ctgaaattgttttgttttattt 26
             ||||||||||||||||||||||
Sbjct: 96766 ctgaaattgttttgttttattt 96745
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>gb|AC161884.5| Mus musculus BAC clone RP23-77K23 from chromosome 14, complete sequence
          Length = 243730

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     attgttttgttttatttcaaa 30
              |||||||||||||||||||||
Sbjct: 120152 attgttttgttttatttcaaa 120132
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>gb|AC133890.16| Mus musculus chromosome 10, clone RP23-339N24, complete sequence
          Length = 211758

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      tgaaattgttttgttttattt 26
              |||||||||||||||||||||
Sbjct: 177615 tgaaattgttttgttttattt 177595
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>gb|AC115741.9| Mus musculus chromosome 14, clone RP23-476L2, complete sequence
          Length = 188141

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 10   attgttttgttttatttcaaa 30
            |||||||||||||||||||||
Sbjct: 2505 attgttttgttttatttcaaa 2525
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>gb|AC125147.4| Mus musculus BAC clone RP24-350A15 from chromosome 7, complete sequence
          Length = 184180

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     ttgttttgttttatttcaaag 31
              |||||||||||||||||||||
Sbjct: 100854 ttgttttgttttatttcaaag 100834
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>gb|AC122002.2| Mus musculus BAC clone RP24-335H15 from 7, complete sequence
          Length = 114070

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 6      tgaaattgttttgttttatttcaaa 30
              |||| ||||||||||||||||||||
Sbjct: 110054 tgaagttgttttgttttatttcaaa 110078
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>gb|U80439.1| Caenorhabditis elegans cosmid C01G8, complete sequence
          Length = 38487

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 2    cagctgaaattgttttgttttatttcaaa 30
            |||||||||||||||| ||||| ||||||
Sbjct: 8729 cagctgaaattgtttttttttaattcaaa 8757
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>gb|AC012308.12| Homo sapiens chromosome 10 clone RP11-5G18, complete sequence
          Length = 163816

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    attgttttgttttatttcaaa 30
             |||||||||||||||||||||
Sbjct: 13723 attgttttgttttatttcaaa 13743
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>gb|AC100322.8| Mus musculus chromosome 7, clone RP23-124O24, complete sequence
          Length = 219314

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 6      tgaaattgttttgttttatttcaaa 30
              |||| ||||||||||||||||||||
Sbjct: 150094 tgaagttgttttgttttatttcaaa 150070
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>gb|AC108460.5| Homo sapiens chromosome 11, clone CTD-2302A16, complete sequence
          Length = 149148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    ttgttttgttttatttcaaag 31
             |||||||||||||||||||||
Sbjct: 31655 ttgttttgttttatttcaaag 31635
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>gb|AC021436.8| Homo sapiens chromosome , clone RP11-121C18, complete sequence
          Length = 180765

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    ttgttttgttttatttcaaag 31
             |||||||||||||||||||||
Sbjct: 92043 ttgttttgttttatttcaaag 92023
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>gb|AC093445.4| Mus musculus strain C57BL/6J chromosome 1 clone rp23-267j18, complete
             sequence
          Length = 161678

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 303   ctgccttggcctccacctcca 323
             |||||||||||||||||||||
Sbjct: 94970 ctgccttggcctccacctcca 94990
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>gb|AC164620.5| Mus musculus BAC clone RP23-64H20 from chromosome 18, complete sequence
          Length = 182838

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tttgttttatttcaaagcag 34
             ||||||||||||||||||||
Sbjct: 48578 tttgttttatttcaaagcag 48597
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>gb|AF039048.2| Caenorhabditis elegans cosmid F16B4, complete sequence
          Length = 43814

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     gaaattgttttgttttattt 26
             ||||||||||||||||||||
Sbjct: 36996 gaaattgttttgttttattt 36977
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>ref|XM_590924.2| PREDICTED: Bos taurus retinitis pigmentosa GTPase regulator (RPGR),
            partial mRNA
          Length = 2916

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 69   agtgacagaagggagaatatataa 92
            |||||||||||||||| |||||||
Sbjct: 1806 agtgacagaagggagagtatataa 1829
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>ref|XM_360631.1| Magnaporthe grisea 70-15 hypothetical protein (MG03174.4) partial
           mRNA
          Length = 1425

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 gcacgtcgaacttgaccttc 241
           ||||||||||||||||||||
Sbjct: 127 gcacgtcgaacttgaccttc 108
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>ref|XM_718041.1| Candida albicans SC5314 putative peroxisomal small molecule
            transporter (CaO19_5921), mRNA
          Length = 1092

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 14   ttttgttttatttcaaagcagaat 37
            |||||||||||||||||| |||||
Sbjct: 983  ttttgttttatttcaaagaagaat 1006
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>ref|XM_717894.1| Candida albicans SC5314 putative peroxisomal small molecule
            transporter (CaO19_13342), mRNA
          Length = 1092

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 14   ttttgttttatttcaaagcagaat 37
            |||||||||||||||||| |||||
Sbjct: 983  ttttgttttatttcaaagaagaat 1006
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>gb|AC139223.8| Mus musculus chromosome 8, clone RP24-322F24, complete sequence
          Length = 180051

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 13     gttttgttttatttcaaagcagaa 36
              ||||||||||||||| ||||||||
Sbjct: 140430 gttttgttttatttccaagcagaa 140453
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>emb|CR974589.6| Mouse DNA sequence from clone RP23-77B14 on chromosome 12, complete
              sequence
          Length = 198849

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     tgttttgttttatttcaaag 31
              ||||||||||||||||||||
Sbjct: 142196 tgttttgttttatttcaaag 142177
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>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence
          Length = 193610

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ttgttttgttttatttcaaa 30
              ||||||||||||||||||||
Sbjct: 114420 ttgttttgttttatttcaaa 114439
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>gb|AC116597.3| Mus musculus BAC clone RP24-409C23 from chromosome 18, complete sequence
          Length = 198519

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     tttgttttatttcaaagcag 34
              ||||||||||||||||||||
Sbjct: 197606 tttgttttatttcaaagcag 197625
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>emb|Z35719.1|CEF17C8 Caenorhabditis elegans Cosmid F17C8, complete sequence
          Length = 32445

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    aattgttttgttttatttca 28
            ||||||||||||||||||||
Sbjct: 1234 aattgttttgttttatttca 1215
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>gb|AC114009.4| Mus musculus BAC clone RP23-385K2 from 8, complete sequence
          Length = 202089

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 21     ttatttcaaagcagaatata 40
              ||||||||||||||||||||
Sbjct: 137793 ttatttcaaagcagaatata 137812
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>ref|XM_721403.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00732)
           partial mRNA
          Length = 1713

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   tgaaattgttttgttttatt 25
           ||||||||||||||||||||
Sbjct: 730 tgaaattgttttgttttatt 711
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>gb|AF039051.1| Caenorhabditis elegans cosmid C14C6, complete sequence
          Length = 39986

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    agctgaaattgttttgtttt 22
            ||||||||||||||||||||
Sbjct: 8798 agctgaaattgttttgtttt 8779
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>emb|CR388365.9| Zebrafish DNA sequence from clone DKEY-24I24 in linkage group 16,
              complete sequence
          Length = 150795

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     tttgttttatttcaaagcag 34
              ||||||||||||||||||||
Sbjct: 120526 tttgttttatttcaaagcag 120545
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>emb|AL353801.13| Human DNA sequence from clone RP11-285G1 on chromosome 10 Contains two
              novel genes, the gene for AD037 protein (AD037), the gene
              for a decidual protein induced by progesterone (DEPP), a
              novel gene (FLJ30567), the ZNF22 gene for zinc finger
              protein 22 (KOX 15), a novel gene and two CpG islands,
              complete sequence
          Length = 222490

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    tctgccttggcctccacctc 321
              ||||||||||||||||||||
Sbjct: 170723 tctgccttggcctccacctc 170704
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>emb|AL033375.2|HS21F7 Human DNA sequence from clone RP1-21F7 on chromosome 6q16.1-21 Contains
             the 5' end of the gene for a novel protein (KIAA1900) and
             a CpG island, complete sequence
          Length = 150789

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    tttatttcaaagcagaatat 39
             ||||||||||||||||||||
Sbjct: 98046 tttatttcaaagcagaatat 98065
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>emb|BX883046.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
            assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
            RT1n haplotype; segment 5/11
          Length = 349047

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 305  gccttggcctccacctccaa 324
            ||||||||||||||||||||
Sbjct: 7722 gccttggcctccacctccaa 7741
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>emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chromosome 11 Contains the
              5' end of a novel gene, three novel genes, the Slc6a4 gene
              for solute carrier family 6 (neurotransmitter transporter,
              serotonin) member 4, the Blmh gene for bleomycin hydrolase
              and three CpG islands, complete sequence
          Length = 229289

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     tgttttgttttatttcaaag 31
              ||||||||||||||||||||
Sbjct: 100575 tgttttgttttatttcaaag 100594
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>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete
            sequence
          Length = 201524

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   ttgttttgttttatttcaaa 30
            ||||||||||||||||||||
Sbjct: 9614 ttgttttgttttatttcaaa 9633
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>emb|CR384105.16| Zebrafish DNA sequence from clone CH211-186K13 in linkage group 14,
             complete sequence
          Length = 144285

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tttgttttatttcaaagcag 34
             ||||||||||||||||||||
Sbjct: 69683 tttgttttatttcaaagcag 69702
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>emb|AL645589.24| Mouse DNA sequence from clone RP23-289H16 on chromosome 11 Contains the
             3' end of the Vdac1 gene for voltage-dependent anion
             channel 1, a novel gene (9530068E07Rik), a
             ubiquinol-cytochrome c reductase subunit (Uqcr)
             pseudogene, a novel pseudogene, a ribosomal protein S28
             (Rps28) pseudogene and a CpG island, complete sequence
          Length = 165536

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aattgttttgttttatttca 28
             ||||||||||||||||||||
Sbjct: 35431 aattgttttgttttatttca 35450
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>gb|AC124148.15| Pan troglodytes clone rp43-71k6, complete sequence
          Length = 194187

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   tctgccttggcctccacctc 321
             ||||||||||||||||||||
Sbjct: 40686 tctgccttggcctccacctc 40667
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>emb|BX530719.4| Zebrafish DNA sequence from clone DKEYP-51D11 in linkage group 14,
             complete sequence
          Length = 197865

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    tttgttttatttcaaagcag 34
             ||||||||||||||||||||
Sbjct: 59417 tttgttttatttcaaagcag 59436
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>gb|AC093816.3| Homo sapiens BAC clone RP11-364P2 from 4, complete sequence
          Length = 170227

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      gaaattgttttgttttattt 26
              ||||||||||||||||||||
Sbjct: 122584 gaaattgttttgttttattt 122565
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>gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosome 9, complete sequence
          Length = 195151

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     gaaattgttttgttttattt 26
             ||||||||||||||||||||
Sbjct: 42048 gaaattgttttgttttattt 42067
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>ref|NM_071055.2| Caenorhabditis elegans Serpentine Receptor, class BC (class B-like)
           family member (srbc-41) (srbc-41) mRNA, complete cds
          Length = 891

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   gaaattgttttgttttattt 26
           ||||||||||||||||||||
Sbjct: 106 gaaattgttttgttttattt 125
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>ref|NM_212462.1| Rattus norvegicus HLA-B associated transcript 2 (Bat2), mRNA
          Length = 6486

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 305  gccttggcctccacctccaa 324
            ||||||||||||||||||||
Sbjct: 2748 gccttggcctccacctccaa 2729
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>gb|AC092947.12| Homo sapiens 3 BAC RP11-548O1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 72207

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   aggcgtctgccttggcctcc 316
             ||||||||||||||||||||
Sbjct: 17135 aggcgtctgccttggcctcc 17154
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>gb|AF286474.1|AF286474 Bos taurus retinitis pigmentosa GTPase regulator (RPGR) gene,
           partial cds
          Length = 2805

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 69  agtgacagaagggagaatatataa 92
           |||||||||||||||| |||||||
Sbjct: 93  agtgacagaagggagagtatataa 116
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>emb|BX293568.7| Zebrafish DNA sequence from clone CH211-215F13 in linkage group 20,
             complete sequence
          Length = 221849

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttgttttgttttatttcaaa 30
             ||||||||||||||||||||
Sbjct: 96063 ttgttttgttttatttcaaa 96082
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>emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chromosome X, complete
              sequence
          Length = 206856

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     tgttttgttttatttcaaag 31
              ||||||||||||||||||||
Sbjct: 127165 tgttttgttttatttcaaag 127146
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>emb|CR848749.13| Zebrafish DNA sequence from clone CH211-147F13 in linkage group 15,
              complete sequence
          Length = 161648

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      aaattgttttgttttatttc 27
              ||||||||||||||||||||
Sbjct: 156949 aaattgttttgttttatttc 156968
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>gb|AC171917.14| Mus musculus chromosome 8, clone RP23-390K13, complete sequence
          Length = 217234

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    ttgttttgttttatttcaaagcag 34
             |||||||||||| |||||||||||
Sbjct: 12819 ttgttttgttttgtttcaaagcag 12796
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>dbj|D14635.1|CELEMB5 Caenorhabditis elegans gene for EMB-5, complete cds
          Length = 6551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 9    aattgttttgttttatttca 28
            ||||||||||||||||||||
Sbjct: 3417 aattgttttgttttatttca 3436
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>emb|AL929144.10| Mouse DNA sequence from clone RP23-441D24 on chromosome 2, complete
             sequence
          Length = 82369

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttgttttgttttatttcaaa 30
             ||||||||||||||||||||
Sbjct: 69767 ttgttttgttttatttcaaa 69786
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>emb|AL732330.14| Mouse DNA sequence from clone RP23-130L11 on chromosome 2, complete
             sequence
          Length = 241418

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 14    ttttgttttatttcaaagcagaat 37
             ||||||||| ||||||||||||||
Sbjct: 12556 ttttgttttttttcaaagcagaat 12533
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>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete
              sequence
          Length = 188772

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    gcacaggctcttgggcacat 155
              ||||||||||||||||||||
Sbjct: 115184 gcacaggctcttgggcacat 115203
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>emb|AL808111.4| Mouse DNA sequence from clone RP23-355J9 on chromosome X, complete
              sequence
          Length = 199724

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ttacaaaagtaaatgcaatc 67
              ||||||||||||||||||||
Sbjct: 124294 ttacaaaagtaaatgcaatc 124313
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>emb|AL928797.6| Mouse DNA sequence from clone RP23-178B19 on chromosome 2, complete
             sequence
          Length = 166185

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    ttatttcaaagcagaatata 40
             ||||||||||||||||||||
Sbjct: 85440 ttatttcaaagcagaatata 85421
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>emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chromosome 4, complete
              sequence
          Length = 218429

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     ttgttttgttttatttcaaa 30
              ||||||||||||||||||||
Sbjct: 132643 ttgttttgttttatttcaaa 132624
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>emb|AJ421481.1| Bos taurus X-inactivation center region, Jpx and Xist genes
          Length = 233345

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 136    gcacaggctcttgggcacatgcgc 159
              ||||||||||| ||||||||||||
Sbjct: 158015 gcacaggctctagggcacatgcgc 158038


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,313,757
Number of Sequences: 3902068
Number of extensions: 5313757
Number of successful extensions: 207338
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 207155
Number of HSP's gapped (non-prelim): 183
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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