ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet47c12 |
|---|---|
| Clone Library Name | barley_pub |
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -1 Query: 398 CCGVGRNNGQVTCLPFQTP-CPNRNEYLFWDAFHPTEAA 285 CC G + C + CPN + YLFWD HPT+ A Sbjct: 478 CCKTGLLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRA 516
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 33.9 bits (76), Expect = 0.095 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = -1 Query: 398 CCGVGRNNGQVTCLPFQTP-CPNRNEYLFWDAFHPTEAA 285 CC +G G V C N + YLFWD HP++ A Sbjct: 395 CCKIGLTKGGVFCKERTLKNMSNASSYLFWDGLHPSQRA 433
>TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily member 6B| precursor (Decoy receptor for Fas ligand) (Decoy receptor 3) (DcR3) (M68) Length = 300 Score = 31.2 bits (69), Expect = 0.62 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = -1 Query: 383 RNNGQVTCLPFQTPCPNRNEYLFWDAFHPTEAANVLVGQRAYAARLASDVH 231 R + TC PCP R+ FW+ NVL G+R AR H Sbjct: 63 RRDSPTTC----GPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATH 109
>MTFA_YERPS (Q667H7) Putative RNA 2'-O-ribose methyltransferase mtfA (EC| 2.1.1.-) Length = 368 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Frame = -1 Query: 401 GCCGVG----RNNGQ----VTCLPFQTPCPNRNEYLFWDAFHPTEAANVLVGQRAYAARL 246 GCC VG NN + L F + P+R+ +AFH V + + RL Sbjct: 157 GCCYVGYSYSNNNSPFYMGIPRLKFPSDAPSRSTLKLEEAFH------VFIPADEWEERL 210 Query: 245 ASDVHPVDI 219 AS +H VD+ Sbjct: 211 ASGMHAVDL 219
>MTFA_YERPE (Q8ZH78) Putative RNA 2'-O-ribose methyltransferase mtfA (EC| 2.1.1.-) Length = 368 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Frame = -1 Query: 401 GCCGVG----RNNGQ----VTCLPFQTPCPNRNEYLFWDAFHPTEAANVLVGQRAYAARL 246 GCC VG NN + L F + P+R+ +AFH V + + RL Sbjct: 157 GCCYVGYSYSNNNSPFYMGIPRLKFPSDAPSRSTLKLEEAFH------VFIPADEWEERL 210 Query: 245 ASDVHPVDI 219 AS +H VD+ Sbjct: 211 ASGMHAVDL 219
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = -1 Query: 119 RLRLDFATVCSHSAHSVLDGQ 57 RL+LDF+T+C + H+++ GQ Sbjct: 817 RLKLDFSTLCDYDDHNLVQGQ 837
>WDR24_BRARE (Q7ZVL2) WD-repeat protein 24| Length = 779 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 8/46 (17%) Frame = -1 Query: 377 NGQVTCLPFQTPCPNRNEYLFWD--------AFHPTEAANVLVGQR 264 NG V PC N+ E LF + FHPTE +L G + Sbjct: 90 NGAVVTWNLSRPCRNKQEQLFTEHKRTVNKVCFHPTEVNMLLSGSQ 135
>GLHA_CERNI (Q8WMR3) Glycoprotein hormones alpha chain precursor (Anterior| pituitary glycoprotein hormones common alpha subunit) (Follitropin alpha chain) (Follicle-stimulating hormone alpha chain) (FSH-alpha) (Lutropin alpha chain) (Luteinizing hormone a Length = 120 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = +2 Query: 17 VQIKFDAAESYYMVAHLKHCELSESIRLQNPDANVSSCMCCTESCIYFT 163 +QI + +M+ C+L E+ PDA + CM C S Y T Sbjct: 19 LQILHSFPDGEFMMQGCPECKLKENKYFSKPDAPIYQCMGCCFSRAYPT 67
>GLHA_CAPHI (Q8WMW8) Glycoprotein hormones alpha chain precursor (Anterior| pituitary glycoprotein hormones common alpha subunit) (Follitropin alpha chain) (Follicle-stimulating hormone alpha chain) (FSH-alpha) (Lutropin alpha chain) (Luteinizing hormone a Length = 120 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = +2 Query: 17 VQIKFDAAESYYMVAHLKHCELSESIRLQNPDANVSSCMCCTESCIYFT 163 +QI + +M+ C+L E+ PDA + CM C S Y T Sbjct: 19 LQILHSFPDGEFMMQGCPECKLKENKYFSKPDAPIYQCMGCCFSRAYPT 67
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +1 Query: 211 RVLMSTG-CTSEASRAA*ALWPTSTLAASVGWKASQKRYSLRLGQGVWNGRQVTCPL 378 R++ + G + S AA L PT + W A+ ++ S+ L G +NG Q +CP+ Sbjct: 2187 RLMQAMGRAQQQGSGAARTLPPTQ-----LEWTATYEKASMALDVGCFNGDQFSCPV 2238
>NAS4_CAEEL (P55112) Zinc metalloproteinase nas-4 precursor (EC 3.4.24.21)| (Nematode astacin 4) Length = 315 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/54 (25%), Positives = 24/54 (44%) Frame = -1 Query: 365 TCLPFQTPCPNRNEYLFWDAFHPTEAANVLVGQRAYAARLASDVHPVDISTLAH 204 TC+ F P+++ W HP E LVG+ ++ D + + T+ H Sbjct: 136 TCVKFVARDPSKHHDYLW--IHPDEGCYSLVGKTGGKQPVSLDSGCIQVGTIVH 187
>KCNA5_RABIT (P50638) Potassium voltage-gated channel subfamily A member 5| (Voltage-gated potassium channel subunit Kv1.5) Length = 598 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -3 Query: 393 RRGAEQRAGHLPAVPDALPQPQRVPL 316 RRGAE LP P LPQ +R PL Sbjct: 52 RRGAEPGERPLPPQPPELPQSRRSPL 77
>SYIM_HUMAN (Q9NSE4) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.5) (Isoleucine--tRNA ligase) (IleRS) Length = 1012 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = +1 Query: 217 LMSTGCTSEASRAA*ALWPTSTLAASVGWKASQKRYSLRLGQGVWN 354 L G + A A +LW T L S GW+ + KR +R G N Sbjct: 5 LRPRGPGAAALATARSLWGTPRLPCSPGWQGATKRLLVRSVSGASN 50
>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)| Length = 645 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/68 (32%), Positives = 31/68 (45%) Frame = -1 Query: 395 CGVGRNNGQVTCLPFQTPCPNRNEYLFWDAFHPTEAANVLVGQRAYAARLASDVHPVDIS 216 C G N G +C T +LF D FHPT A+ +V Q Y + + + V + Sbjct: 301 CAQGVNAG--SCRSKDTGFDASKPFLFADDFHPTPEAHHIVSQ--YTVSVLNAPYRVMLL 356 Query: 215 TLAHL*PV 192 T A+ PV Sbjct: 357 TNANNVPV 364
>MBTP1_RAT (Q9WTZ3) Membrane-bound transcription factor site 1 protease| precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1 protease) (Subtilisin/kexin isozyme 1) (SKI-1) Length = 1052 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = +1 Query: 271 PTSTLAASVGWKASQ--KRYSLRLGQGVWN--GRQVTCPLFRPTPQQ 399 P + S W++S+ KR SL LG G W+ GR + L R P+Q Sbjct: 146 PCNETRWSQKWQSSRPLKRASLSLGSGFWHATGRHSSRRLLRAIPRQ 192
>MBTP1_MOUSE (Q9WTZ2) Membrane-bound transcription factor site 1 protease| precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1 protease) (Subtilisin/kexin isozyme 1) (SKI-1) (Sterol-regulated luminal protease) Length = 1052 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%) Frame = +1 Query: 271 PTSTLAASVGWKASQ--KRYSLRLGQGVWN--GRQVTCPLFRPTPQQ 399 P + S W++S+ KR SL LG G W+ GR + L R P+Q Sbjct: 146 PCNETRWSQKWQSSRPLKRASLSLGSGFWHATGRHSSRRLLRAIPRQ 192
>OAT6_MOUSE (Q80UJ1) Solute carrier family 22 member 20 (Organic anion| transporter 6) Length = 556 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = -1 Query: 323 YLFWDAFHPTEAANVLVGQRAYAARLASDVHPVDISTLAHL*PVV 189 YLF +PTE + +G + ARL V P+ I+TL + PV+ Sbjct: 444 YLFTGELYPTEIRQMGMGFASVNARLGGLVAPL-ITTLGEISPVL 487
>DXS_NITEU (Q82VD3) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 614 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 353 FQTPCPNRNEYLFWDAFHPTEAANVLVGQRAYAARL 246 F TP + L WD H T A +L G+R ARL Sbjct: 61 FDTPF----DRLIWDVGHQTYAHKILTGRRTGMARL 92
>METE_STAAW (Q8NY94) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 742 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 314 WDAFHPTEAANVLVGQRAYAARLASDVHPVDISTL 210 WD P + NVL+ + YA L + HPV + + Sbjct: 125 WDNVEPKVSRNVLLDRFKYAQSLNVNAHPVIVGPI 159
>METE_STAAS (Q6GCB6) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 742 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 314 WDAFHPTEAANVLVGQRAYAARLASDVHPVDISTL 210 WD P + NVL+ + YA L + HPV + + Sbjct: 125 WDNVEPKVSRNVLLDRFKYAQSLNVNAHPVIVGPI 159
>METE_STAAR (Q6GJW2) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 742 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 314 WDAFHPTEAANVLVGQRAYAARLASDVHPVDISTL 210 WD P + NVL+ + YA L + HPV + + Sbjct: 125 WDNVEPKVSRNVLLDRFKYAQSLNVNAHPVIVGPI 159
>METE_STAAN (P65343) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 742 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 314 WDAFHPTEAANVLVGQRAYAARLASDVHPVDISTL 210 WD P + NVL+ + YA L + HPV + + Sbjct: 125 WDNVEPKVSRNVLLDRFKYAQSLNVNAHPVIVGPI 159
>METE_STAAM (P65342) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 742 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 314 WDAFHPTEAANVLVGQRAYAARLASDVHPVDISTL 210 WD P + NVL+ + YA L + HPV + + Sbjct: 125 WDNVEPKVSRNVLLDRFKYAQSLNVNAHPVIVGPI 159
>METE_STAAC (Q5HIT8) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 742 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -1 Query: 314 WDAFHPTEAANVLVGQRAYAARLASDVHPVDISTL 210 WD P + NVL+ + YA L + HPV + + Sbjct: 125 WDNVEPKVSRNVLLDRFKYAQSLNVNAHPVIVGPI 159 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,949,915 Number of Sequences: 219361 Number of extensions: 814179 Number of successful extensions: 2445 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2397 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2445 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
