ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet47c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475723.1| Oryza sativa (japonica cultivar-group), predic... 117 3e-23
2gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome... 117 3e-23
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
4dbj|AK061147.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
5ref|NM_191210.1| Oryza sativa (japonica cultivar-group), predic... 113 4e-22
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
7dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic D... 113 4e-22
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
9gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
10emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 82 2e-12
11ref|NM_191862.1| Oryza sativa (japonica cultivar-group), predic... 60 6e-06
12dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
13dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
14dbj|AK104682.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
15dbj|AK070946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
16ref|XM_468393.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
17ref|XM_507548.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 4e-04
18ref|XM_507046.2| PREDICTED Oryza sativa (japonica cultivar-group... 54 4e-04
19ref|XM_464400.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
21dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
22dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
23dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
24dbj|AK106084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
25dbj|AK099251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
26dbj|AK060691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
27dbj|AK060243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
28gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence 46 0.087
29gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 46 0.087
30gb|AY106178.1| Zea mays PCO130453 mRNA sequence 46 0.087
31gb|AY107654.1| Zea mays PCO095720 mRNA sequence 44 0.34
32gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
33emb|Y11548.1|SPSNBCDE S.pristinaespiralis snbC gene & snbDE gene 42 1.4
34emb|X98690.1|SPSNBCGEN S.pristinaespiralis snbC and snbDE genes 42 1.4
35gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Ca... 42 1.4
36gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park C... 42 1.4
37dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.4
38dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.4
39dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
40ref|NM_026280.1| Mus musculus RIKEN cDNA 1810057P16 gene (181005... 40 5.4
41gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, co... 40 5.4
42gb|AC123933.4| Mus musculus BAC clone RP23-339F7 from chromosome... 40 5.4
43emb|AL391094.12| Human DNA sequence from clone RP5-903E17 on chr... 40 5.4
44gb|AC091694.9| Mus musculus Strain C57BL6/J chromosome 11 BAC, R... 40 5.4
45gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.4
46gb|AC090495.5| Genomic sequence for Mus musculus, clone RP23-60B... 40 5.4
47gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytans... 40 5.4
48gb|AC093788.3| Homo sapiens BAC clone RP11-218F10 from 4, comple... 40 5.4
49gb|AC156609.8| Mus musculus chromosome 15, clone RP23-56E21, com... 40 5.4
50dbj|AK012601.1| Mus musculus 11 days embryo whole body cDNA, RIK... 40 5.4
51dbj|AK021409.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 5.4
52dbj|AK075801.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 40 5.4
53gb|BC075618.1| Mus musculus RIKEN cDNA 1810057P16 gene, mRNA (cD... 40 5.4
54ref|XM_577150.1| PREDICTED: Rattus norvegicus similar to thymosi... 40 5.4
55emb|Z22577.1|SAGLCTRAA S.antibioticus membrane protein, lipoprot... 40 5.4
56gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, co... 40 5.4
57emb|CT025577.11| Mouse DNA sequence from clone RP24-172I18 on ch... 40 5.4
58emb|AL928991.9| Mouse DNA sequence from clone RP23-455F5 on chro... 40 5.4
59gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, comple... 40 5.4
60emb|AL645542.13| Mouse DNA sequence from clone RP23-468A19 on ch... 40 5.4 
>ref|XM_475723.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1098

 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  cctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaagaggta 323
            ||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  |||
Sbjct: 1032 cctctggccgacgagtacgttggccgcctccgtcgggtggaacgcgtcccagaaggcgta 973

                                                                        
Query: 324  ctcgttgcggttggggcagggcgtctggaacggcaggcaggtgacctgcccgttgttccg 383
            |||||  | ||||| ||| |||||||||||||||||||| || ||||| |||||||||| 
Sbjct: 972  ctcgtgcctgttggcgcacggcgtctggaacggcaggcacgtcacctgaccgttgttcct 913

                           
Query: 384  ccccacgccgcagca 398
            |||||| || |||||
Sbjct: 912  ccccaccccacagca 898
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>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
              complete sequence
          Length = 143073

 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Plus

                                                                          
Query: 264    cctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaagaggta 323
              ||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  |||
Sbjct: 123223 cctctggccgacgagtacgttggccgcctccgtcgggtggaacgcgtcccagaaggcgta 123282

                                                                          
Query: 324    ctcgttgcggttggggcagggcgtctggaacggcaggcaggtgacctgcccgttgttccg 383
              |||||  | ||||| ||| |||||||||||||||||||| || ||||| |||||||||| 
Sbjct: 123283 ctcgtgcctgttggcgcacggcgtctggaacggcaggcacgtcacctgaccgttgttcct 123342

                             
Query: 384    ccccacgccgcagca 398
              |||||| || |||||
Sbjct: 123343 ccccaccccacagca 123357
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Plus

                                                                            
Query: 264      cctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaagaggta 323
                ||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  |||
Sbjct: 25482862 cctctggccgacgagtacgttggccgcctccgtcgggtggaacgcgtcccagaaggcgta 25482921

                                                                            
Query: 324      ctcgttgcggttggggcagggcgtctggaacggcaggcaggtgacctgcccgttgttccg 383
                |||||  | ||||| ||| |||||||||||||||||||| || ||||| |||||||||| 
Sbjct: 25482922 ctcgtgcctgttggcgcacggcgtctggaacggcaggcacgtcacctgaccgttgttcct 25482981

                               
Query: 384      ccccacgccgcagca 398
                |||||| || |||||
Sbjct: 25482982 ccccaccccacagca 25482996



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 295      gtggggtggaaggcgtcccaaaaga 319
                |||||||||||||||||||| ||||
Sbjct: 20446162 gtggggtggaaggcgtcccagaaga 20446138
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>dbj|AK061147.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D08, full
            insert sequence
          Length = 1315

 Score =  117 bits (59), Expect = 3e-23
 Identities = 116/135 (85%)
 Strand = Plus / Minus

                                                                        
Query: 264  cctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaagaggta 323
            ||||||||||||||| |||||||| ||||| || |||||||| |||||||| |||  |||
Sbjct: 1096 cctctggccgacgagtacgttggccgcctccgtcgggtggaacgcgtcccagaaggcgta 1037

                                                                        
Query: 324  ctcgttgcggttggggcagggcgtctggaacggcaggcaggtgacctgcccgttgttccg 383
            |||||  | ||||| ||| |||||||||||||||||||| || ||||| |||||||||| 
Sbjct: 1036 ctcgtgcctgttggcgcacggcgtctggaacggcaggcacgtcacctgaccgttgttcct 977

                           
Query: 384  ccccacgccgcagca 398
            |||||| || |||||
Sbjct: 976  ccccaccccacagca 962
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>ref|NM_191210.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1092

 Score =  113 bits (57), Expect = 4e-22
 Identities = 120/141 (85%)
 Strand = Plus / Minus

                                                                        
Query: 258  gtaggccctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaa 317
            |||||||||| |||||||||  |  ||||| ||||| || |||||||| |||||||| ||
Sbjct: 1032 gtaggccctccggccgacgaagatattggcagcctccgtcgggtggaacgcgtcccagaa 973

                                                                        
Query: 318  gaggtactcgttgcggttggggcagggcgtctggaacggcaggcaggtgacctgcccgtt 377
            |||||||||||  ||||||| ||| |||| |||| |||| ||||| || |||||||||||
Sbjct: 972  gaggtactcgtcccggttggcgcacggcgcctggtacgggaggcacgtcacctgcccgtt 913

                                 
Query: 378  gttccgccccacgccgcagca 398
            ||||| |||||| ||||||||
Sbjct: 912  gttcctccccaccccgcagca 892
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  113 bits (57), Expect = 4e-22
 Identities = 120/141 (85%)
 Strand = Plus / Minus

                                                                            
Query: 258      gtaggccctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaa 317
                |||||||||| |||||||||  |  ||||| ||||| || |||||||| |||||||| ||
Sbjct: 31326265 gtaggccctccggccgacgaagatattggcagcctccgtcgggtggaacgcgtcccagaa 31326206

                                                                            
Query: 318      gaggtactcgttgcggttggggcagggcgtctggaacggcaggcaggtgacctgcccgtt 377
                |||||||||||  ||||||| ||| |||| |||| |||| ||||| || |||||||||||
Sbjct: 31326205 gaggtactcgtcccggttggcgcacggcgcctggtacgggaggcacgtcacctgcccgtt 31326146

                                     
Query: 378      gttccgccccacgccgcagca 398
                ||||| |||||| ||||||||
Sbjct: 31326145 gttcctccccaccccgcagca 31326125



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 353      acggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
                |||||||||| || |||||||||||||||| ||| |||||||||||
Sbjct: 30356788 acggcaggcacgtcacctgcccgttgttcctcccgacgccgcagca 30356743
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>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0481E12
          Length = 161563

 Score =  113 bits (57), Expect = 4e-22
 Identities = 120/141 (85%)
 Strand = Plus / Minus

                                                                         
Query: 258   gtaggccctctggccgacgagcacgttggcggcctcggtggggtggaaggcgtcccaaaa 317
             |||||||||| |||||||||  |  ||||| ||||| || |||||||| |||||||| ||
Sbjct: 80548 gtaggccctccggccgacgaagatattggcagcctccgtcgggtggaacgcgtcccagaa 80489

                                                                         
Query: 318   gaggtactcgttgcggttggggcagggcgtctggaacggcaggcaggtgacctgcccgtt 377
             |||||||||||  ||||||| ||| |||| |||| |||| ||||| || |||||||||||
Sbjct: 80488 gaggtactcgtcccggttggcgcacggcgcctggtacgggaggcacgtcacctgcccgtt 80429

                                  
Query: 378   gttccgccccacgccgcagca 398
             ||||| |||||| ||||||||
Sbjct: 80428 gttcctccccaccccgcagca 80408
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 98/117 (83%)
 Strand = Plus / Plus

                                                                            
Query: 282      gttggcggcctcggtggggtggaaggcgtcccaaaagaggtactcgttgcggttggggca 341
                |||||| ||||| || ||||||||||||||||| || | ||||| | | |||| |  |||
Sbjct: 10069266 gttggccgcctccgtcgggtggaaggcgtcccagaacacgtacttgctccggtcgccgca 10069325

                                                                         
Query: 342      gggcgtctggaacggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
                 |||  ||| | ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 10069326 cggctgctgcatcggcaggcacgtgatctgcccgttgttccgccccacgccgcagca 10069382
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 98/117 (83%)
 Strand = Plus / Plus

                                                                            
Query: 282      gttggcggcctcggtggggtggaaggcgtcccaaaagaggtactcgttgcggttggggca 341
                |||||| ||||| || ||||||||||||||||| || | ||||| | | |||| |  |||
Sbjct: 10069151 gttggccgcctccgtcgggtggaaggcgtcccagaacacgtacttgctccggtcgccgca 10069210

                                                                         
Query: 342      gggcgtctggaacggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
                 |||  ||| | ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 10069211 cggctgctgcatcggcaggcacgtgatctgcccgttgttccgccccacgccgcagca 10069267
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>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 98/117 (83%)
 Strand = Plus / Minus

                                                                         
Query: 282   gttggcggcctcggtggggtggaaggcgtcccaaaagaggtactcgttgcggttggggca 341
             |||||| ||||| || ||||||||||||||||| || | ||||| | | |||| |  |||
Sbjct: 93355 gttggccgcctccgtcgggtggaaggcgtcccagaacacgtacttgctccggtcgccgca 93296

                                                                      
Query: 342   gggcgtctggaacggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
              |||  ||| | ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 93295 cggctgctgcatcggcaggcacgtgatctgcccgttgttccgccccacgccgcagca 93239
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>ref|NM_191862.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1092

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 353 acggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
           |||||||||| || |||||||||||||||| ||| |||||||||||
Sbjct: 937 acggcaggcacgtcacctgcccgttgttcctcccgacgccgcagca 892
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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0042A10
          Length = 146840

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 353    acggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
              |||||||||| || |||||||||||||||| ||| |||||||||||
Sbjct: 145107 acggcaggcacgtcacctgcccgttgttcctcccgacgccgcagca 145062
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>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0456A01
          Length = 143710

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 353   acggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
             |||||||||| || |||||||||||||||| ||| |||||||||||
Sbjct: 42515 acggcaggcacgtcacctgcccgttgttcctcccgacgccgcagca 42470
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>dbj|AK104682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A06, full
           insert sequence
          Length = 714

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 353 acggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
           |||||||||| || |||||||||||||||| ||| |||||||||||
Sbjct: 151 acggcaggcacgtcacctgcccgttgttcctcccgacgccgcagca 106
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>dbj|AK070946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074K21, full
            insert sequence
          Length = 2149

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 353  acggcaggcaggtgacctgcccgttgttccgccccacgccgcagca 398
            |||||||||| || |||||||||||||||| ||| |||||||||||
Sbjct: 1578 acggcaggcacgtcacctgcccgttgttcctcccgacgccgcagca 1533
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>ref|XM_468393.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1517

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 282  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 324
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>ref|XM_507548.1| PREDICTED Oryza sativa (japonica cultivar-group), P0643F09.14 mRNA
          Length = 1525

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 282  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 324
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>ref|XM_507046.2| PREDICTED Oryza sativa (japonica cultivar-group), P0643F09.14 mRNA
          Length = 1558

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 282  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 324
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>ref|XM_464400.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1310

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 295  gtggggtggaaggcgtcccaaaagaggtact 325
            |||||||||||||||||||| ||||||||||
Sbjct: 1099 gtggggtggaaggcgtcccagaagaggtact 1069
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                           
Query: 282      gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 324
                |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 34986565 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 34986607



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                              
Query: 295     gtggggtggaaggcgtcccaaaagaggtact 325
               |||||||||||||||||||| ||||||||||
Sbjct: 4948172 gtggggtggaaggcgtcccagaagaggtact 4948142
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>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0031B09
          Length = 132729

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 295   gtggggtggaaggcgtcccaaaagaggtact 325
             |||||||||||||||||||| ||||||||||
Sbjct: 19298 gtggggtggaaggcgtcccagaagaggtact 19268
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>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1145_F01
          Length = 113755

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 295   gtggggtggaaggcgtcccaaaagaggtact 325
             |||||||||||||||||||| ||||||||||
Sbjct: 92911 gtggggtggaaggcgtcccagaagaggtact 92881
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>dbj|AP005111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643F09
          Length = 161001

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 282   gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 324
             |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 46906 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 46948
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>dbj|AK106084.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B01, full
            insert sequence
          Length = 1525

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 282  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 324
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>dbj|AK099251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154O11, full
            insert sequence
          Length = 1517

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 282  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 324
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>dbj|AK060691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C02, full
            insert sequence
          Length = 1310

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 295  gtggggtggaaggcgtcccaaaagaggtact 325
            |||||||||||||||||||| ||||||||||
Sbjct: 1099 gtggggtggaaggcgtcccagaagaggtact 1069
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>dbj|AK060243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G01, full
            insert sequence
          Length = 1558

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 282  gttggcggcctcggtggggtggaaggcgtcccaaaagaggtac 324
            |||||||  |||||||||||||||||||||||| |||| ||||
Sbjct: 1083 gttggcgcgctcggtggggtggaaggcgtcccagaagacgtac 1041
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>gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence
          Length = 1302

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                       
Query: 298 gggtggaaggcgtcccaaaagaggtactcgttgcggttggggca-gggcgtctggaacgg 356
           ||||||||||||||||| |||| |||   |||||||||| |||| ||||| | |||| ||
Sbjct: 946 gggtggaaggcgtcccagaagatgtaggagttgcggttgaggcacgggcg-caggaaggg 888

                      
Query: 357 caggcaggtga 367
           |||||||||||
Sbjct: 887 caggcaggtga 877
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 365     tgacctgcccgttgttccgccccacgc 391
               ||||||||||||||||| |||||||||
Sbjct: 2156906 tgacctgcccgttgttcggccccacgc 2156880
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>gb|AY106178.1| Zea mays PCO130453 mRNA sequence
          Length = 607

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 61/71 (85%), Gaps = 2/71 (2%)
 Strand = Plus / Minus

                                                                       
Query: 298 gggtggaaggcgtcccaaaagaggtactcgttgcggttggggca-gggcgtctggaacgg 356
           ||||||||||||||||| |||| |||   |||||||||| |||| ||||| | |||| ||
Sbjct: 247 gggtggaaggcgtcccagaagatgtaggagttgcggttgaggcacgggcg-caggaaggg 189

                      
Query: 357 caggcaggtga 367
           |||||||||||
Sbjct: 188 caggcaggtga 178
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>gb|AY107654.1| Zea mays PCO095720 mRNA sequence
          Length = 972

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 282 gttggcggcctcggtggggtggaaggcgtcccaaaaga 319
           ||||||||| || |||||||||||| ||||||| ||||
Sbjct: 644 gttggcggcgtccgtggggtggaagccgtcccagaaga 607
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>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
              complete sequence
          Length = 173074

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 295    gtggggtggaaggcgtcccaaaaga 319
              |||||||||||||||||||| ||||
Sbjct: 117907 gtggggtggaaggcgtcccagaaga 117883
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>emb|Y11548.1|SPSNBCDE S.pristinaespiralis snbC gene & snbDE gene
          Length = 22449

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 243  ggcgagccgggcggcgtaggc 263
            |||||||||||||||||||||
Sbjct: 3693 ggcgagccgggcggcgtaggc 3673
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>emb|X98690.1|SPSNBCGEN S.pristinaespiralis snbC and snbDE genes
          Length = 22449

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 243  ggcgagccgggcggcgtaggc 263
            |||||||||||||||||||||
Sbjct: 3693 ggcgagccgggcggcgtaggc 3673
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>gb|AC092867.7| Homo sapiens 12p BAC RP11-100C20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 195583

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 156    atttcactgacatataaatgt 176
              |||||||||||||||||||||
Sbjct: 131025 atttcactgacatataaatgt 131005
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>gb|AC023796.22| Homo sapiens 12p BAC RP11-625L16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173342

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 156    atttcactgacatataaatgt 176
              |||||||||||||||||||||
Sbjct: 154854 atttcactgacatataaatgt 154834
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 210     gagggtgctgatgtcgacggggtgcacgtcggaggcgagccgggcggcg 258
               ||||| |||| |||||||||||||  |||||| || ||||| |||||||
Sbjct: 1816511 gagggcgctggtgtcgacggggtgggcgtcggcggtgagccaggcggcg 1816559



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 239     cggaggcgagccgggcggcg 258
               ||||||||||||||||||||
Sbjct: 6513967 cggaggcgagccgggcggcg 6513986
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 284     tggcggcctcggtggggtggaaggcgtcc 312
               |||||| ||||||||||| ||||||||||
Sbjct: 4670315 tggcgggctcggtggggtcgaaggcgtcc 4670287
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>dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full
            insert sequence
          Length = 1556

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 295  gtggggtggaaggcgtcccaaaaga 319
            |||||||||||||||||||| ||||
Sbjct: 1113 gtggggtggaaggcgtcccagaaga 1089
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>ref|NM_026280.1| Mus musculus RIKEN cDNA 1810057P16 gene (1810057P16Rik), mRNA
          Length = 1721

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccccacgccgcagcagc 400
           ||||||||||||||||||||
Sbjct: 143 ccgccccacgccgcagcagc 124
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>gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, complete sequence
          Length = 172228

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   gacatataaatgtatatcat 183
             ||||||||||||||||||||
Sbjct: 42812 gacatataaatgtatatcat 42831
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>gb|AC123933.4| Mus musculus BAC clone RP23-339F7 from chromosome 2, complete sequence
          Length = 201267

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    attaaattcgatgctgctgaatca 46
             |||||||| |||||||||||||||
Sbjct: 81558 attaaatttgatgctgctgaatca 81581
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>emb|AL391094.12| Human DNA sequence from clone RP5-903E17 on chromosome 1 Contains the
             3' end of a novel gene (FLJ10199) and the 5' end of the
             gene for a novel protein (FLJ25234), complete sequence
          Length = 45670

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 52    catggttgcccatctaaaacactgtgag 79
             ||||||||||||| | ||||||||||||
Sbjct: 10313 catggttgcccatattaaacactgtgag 10286
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>gb|AC091694.9| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-316F3, Complete
              Sequence, complete sequence
          Length = 213119

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    ccgccccacgccgcagcagc 400
              ||||||||||||||||||||
Sbjct: 119651 ccgccccacgccgcagcagc 119632
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 274     acgagcacgttggcggcctc 293
               ||||||||||||||||||||
Sbjct: 1119850 acgagcacgttggcggcctc 1119831
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>gb|AC090495.5| Genomic sequence for Mus musculus, clone RP23-60B7, complete sequence
          Length = 82400

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cctgcccgttgttccgcccc 387
             ||||||||||||||||||||
Sbjct: 18301 cctgcccgttgttccgcccc 18282
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>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent
             ansamitocin biosynthetic gene cluster I, partial sequence
          Length = 82746

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 234   cacgtcggaggcgagccgggcggc 257
             |||||||| |||||||||||||||
Sbjct: 80680 cacgtcggcggcgagccgggcggc 80703
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>gb|AC093788.3| Homo sapiens BAC clone RP11-218F10 from 4, complete sequence
          Length = 160853

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   agaatcctgcatatatttca 161
             ||||||||||||||||||||
Sbjct: 30086 agaatcctgcatatatttca 30105
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>gb|AC156609.8| Mus musculus chromosome 15, clone RP23-56E21, complete sequence
          Length = 118659

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   cactgacatataaatgtata 179
             ||||||||||||||||||||
Sbjct: 22343 cactgacatataaatgtata 22324
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>dbj|AK012601.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2700092O18 product:hypothetical
           protein, full insert sequence
          Length = 1234

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccccacgccgcagcagc 400
           ||||||||||||||||||||
Sbjct: 114 ccgccccacgccgcagcagc 95
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>dbj|AK021409.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130302J09 product:hypothetical protein,
           full insert sequence
          Length = 600

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccccacgccgcagcagc 400
           ||||||||||||||||||||
Sbjct: 111 ccgccccacgccgcagcagc 92
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>dbj|AK075801.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810057P16 product:hypothetical
           protein, full insert sequence
          Length = 1721

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccccacgccgcagcagc 400
           ||||||||||||||||||||
Sbjct: 143 ccgccccacgccgcagcagc 124
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>gb|BC075618.1| Mus musculus RIKEN cDNA 1810057P16 gene, mRNA (cDNA clone
           IMAGE:5718362)
          Length = 1958

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 381 ccgccccacgccgcagcagc 400
           ||||||||||||||||||||
Sbjct: 109 ccgccccacgccgcagcagc 90
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>ref|XM_577150.1| PREDICTED: Rattus norvegicus similar to thymosin beta10,Arg
           (LOC501749), mRNA
          Length = 834

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 381 ccgccccacgccgcagcagc 400
           ||||||||||||||||||||
Sbjct: 590 ccgccccacgccgcagcagc 609
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>emb|Z22577.1|SAGLCTRAA S.antibioticus membrane protein, lipoprotein, and glycosyltransferase
            genes
          Length = 3389

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  gtcggaggcgagccgggcgg 256
            ||||||||||||||||||||
Sbjct: 1048 gtcggaggcgagccgggcgg 1029
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>gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, complete sequence
          Length = 189515

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   tatttcactgacatataaat 174
             ||||||||||||||||||||
Sbjct: 44644 tatttcactgacatataaat 44625
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>emb|CT025577.11| Mouse DNA sequence from clone RP24-172I18 on chromosome 12, complete
             sequence
          Length = 143997

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   gcatatatttcactgacata 169
             ||||||||||||||||||||
Sbjct: 72567 gcatatatttcactgacata 72548
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>emb|AL928991.9| Mouse DNA sequence from clone RP23-455F5 on chromosome 2, complete
             sequence
          Length = 149871

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    attaaattcgatgctgctgaatca 46
             |||||||| |||||||||||||||
Sbjct: 89779 attaaatttgatgctgctgaatca 89756
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>gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, complete sequence
          Length = 220046

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   cctgcccgttgttccgcccc 387
             ||||||||||||||||||||
Sbjct: 31526 cctgcccgttgttccgcccc 31545
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>emb|AL645542.13| Mouse DNA sequence from clone RP23-468A19 on chromosome 11, complete
              sequence
          Length = 166100

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    ccgccccacgccgcagcagc 400
              ||||||||||||||||||||
Sbjct: 110102 ccgccccacgccgcagcagc 110121


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,798,631
Number of Sequences: 3902068
Number of extensions: 2798631
Number of successful extensions: 55576
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55087
Number of HSP's gapped (non-prelim): 487
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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