ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet46g06 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 102 bits (254), Expect = 2e-22 Identities = 48/53 (90%), Positives = 52/53 (98%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SSTG ITLSVTKSKPETGEVIGVF+S+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 277 SSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 100 bits (249), Expect = 9e-22 Identities = 48/54 (88%), Positives = 52/54 (96%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLES 206 SS G ITLSVT++KPETGEVIGVF+S+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 276 SSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 100 bits (249), Expect = 9e-22 Identities = 47/53 (88%), Positives = 51/53 (96%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SSTG ITLSVT+SKPETGEVIGVF+S+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 280 SSTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 100 bits (248), Expect = 1e-21 Identities = 51/55 (92%), Positives = 53/55 (96%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLESN 203 SSTGNITLSVTKSKPETGEVIGVF+SVQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 273 SSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 98.2 bits (243), Expect = 4e-21 Identities = 46/53 (86%), Positives = 50/53 (94%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 S TG ITLSVT+SKPETGEVIGVF+S+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 277 SLTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 97.4 bits (241), Expect = 7e-21 Identities = 47/53 (88%), Positives = 49/53 (92%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 SS G ITLSVT SKPETGEVIGVFQS+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 278 SSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 95.5 bits (236), Expect = 3e-20 Identities = 44/54 (81%), Positives = 49/54 (90%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLES 206 S TG IT +VTKS P+TGEVIGVF+S+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 280 SLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 95.5 bits (236), Expect = 3e-20 Identities = 45/53 (84%), Positives = 48/53 (90%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +S G ITL VTKSKPETGEVIGVF+S+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 280 ASVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 94.4 bits (233), Expect = 6e-20 Identities = 43/53 (81%), Positives = 48/53 (90%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 +S G ITL +TKSKPETGEVIGVF+S+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 279 ASVGEITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 75.9 bits (185), Expect = 2e-14 Identities = 33/52 (63%), Positives = 39/52 (75%) Frame = -3 Query: 367 SSTGNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQL 212 +S G I V K ETGE+ GVF+S+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 283 ASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 74.7 bits (182), Expect = 5e-14 Identities = 32/50 (64%), Positives = 40/50 (80%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 G+ SV K P TGE+ GVF+S+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 242 GSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 70.9 bits (172), Expect = 7e-13 Identities = 31/49 (63%), Positives = 37/49 (75%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQL 212 G+ SV K TGE+ GVF+S+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 243 GSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 64.7 bits (156), Expect = 5e-11 Identities = 30/49 (61%), Positives = 39/49 (79%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQL 212 G+I+L VTK TGE+ GVF S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 223 GSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 63.5 bits (153), Expect = 1e-10 Identities = 26/52 (50%), Positives = 41/52 (78%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLESN 203 G ++L VT+ TGE+ G+F+S QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 222 GTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 62.4 bits (150), Expect = 3e-10 Identities = 27/50 (54%), Positives = 38/50 (76%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 G I+L + K +GE+ G F+S QPSDTDLGA PK+VKI+G++YA++E Sbjct: 224 GKISLQIAKVDSSSGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 57.0 bits (136), Expect = 1e-08 Identities = 27/50 (54%), Positives = 35/50 (70%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 G I+L+V K TGE+ G F+S Q SD D+GA P +VKIQGV+YA +E Sbjct: 221 GQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 57.0 bits (136), Expect = 1e-08 Identities = 27/50 (54%), Positives = 35/50 (70%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 G I+L+V K TGE+ G F+S Q SD D+GA P +VKIQGV+YA +E Sbjct: 221 GQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 56.6 bits (135), Expect = 1e-08 Identities = 26/50 (52%), Positives = 36/50 (72%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKIQGVWYAQLE 209 G I+L+V+K TGEV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 224 GEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = -3 Query: 358 GNITLSVTKSKPETGEVIGVFQSVQPSDTDLGAKAPKDVKI 236 G + SV K KP+TGEVI V + + G K P +VKI Sbjct: 23 GIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIRGLVGGEERIEATMC 113 QP + KD+K++G W +Q + N S E K IL C IR + R+ A C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLCNLIR-----QGRLTAPSC 345 Query: 112 SCVYL 98 S V L Sbjct: 346 SEVPL 350
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -3 Query: 286 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 155 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein| (Polycystin-1L1) (Fragment) Length = 531 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = +3 Query: 90 FYTKYTHE----HIVASILSSPPTNPRMHAQKMSI 182 FY+K+T HI S+ S PP+ +H Q++++ Sbjct: 199 FYSKFTEYLEDFHIWLSLYSQPPSRSYLHTQRLAV 233
>YQK1_CAEEL (Q09285) Hypothetical protein C56G2.1 in chromosome III| Length = 867 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -2 Query: 356 QHHPQRDQEQAGDRRGDRRLPERTAVRHRPRR 261 QH Q+ +EQ ++G RRL + +V P + Sbjct: 422 QHQQQKKEEQGQIKKGQRRLTKEKSVEETPEK 453
>VCAP_SHV21 (Q00999) Major capsid protein (MCP)| Length = 1371 Score = 28.1 bits (61), Expect = 5.5 Identities = 21/84 (25%), Positives = 35/84 (41%) Frame = +3 Query: 102 YTHEHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 281 YT + ++ S + + H S F L S Y + +GA+ +V Sbjct: 198 YTERGLKKNVKSDLISMFKTHLVNNSFFLDKSEHLPHSRQYVLGILTEMIGAVCKETVFK 257 Query: 282 GCTLWKTPITSPVSGLLLVTLRVM 353 G + + T P+SG+L T +VM Sbjct: 258 GISTYSTANGQPISGVLETTDKVM 281
>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 134 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 253 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138
>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)| Length = 984 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +2 Query: 104 HTRTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 244 H + +D +S Y DEY FC+ +L ++P T D D Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248
>FILA_HUMAN (P20930) Filaggrin| Length = 4061 Score = 27.7 bits (60), Expect = 7.1 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 11/72 (15%) Frame = -2 Query: 362 HGQ--HHPQRDQEQAGDRRGDRRLPERT---AVRHRPRRQGAQGCQDPGCVVR------A 216 HGQ HH Q QE A DR G+R + V + + + G P VR Sbjct: 765 HGQAGHHQQSHQESARDRSGERSRRSGSFLYQVSTHKQSESSHGWTGPSTGVRQGSHHEQ 824 Query: 215 ARV*LEHSRSED 180 AR HS S+D Sbjct: 825 ARDNSRHSASQD 836
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 113 THCCLDSFLSTDQPTYACTKDEYL 184 T C D L QP Y+C +D+Y+ Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203
>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = -3 Query: 349 TLSVTKSKPETGEVIGVFQSVQPSD 275 +LSV+K+K E EV+GV + VQ SD Sbjct: 52 SLSVSKAKKEGFEVLGVKELVQQSD 76
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/59 (27%), Positives = 27/59 (45%) Frame = +3 Query: 102 YTHEHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVS 278 Y H S ++ PP P + Q+M+ TS+ ++ PW +S A+ P + S Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS 528
>KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 134 FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 253 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHVCVSPQELETLIQHALDADNAG 138
>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25| Length = 561 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -2 Query: 344 QRDQEQAGDRRGDRRLPERTAVRHRPR 264 +RD E+ G+RR RR ERT R R R Sbjct: 196 RRDMEREGERRRRRRDGERTRRRERNR 222
>IF2_CARHZ (Q3AB98) Translation initiation factor IF-2| Length = 827 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -2 Query: 356 QHHPQRDQEQAGDRRGDRRLPERTAVRHRPRRQGAQGCQDP 234 Q HPQR +EQ ++G + P R RP+ Q G Q P Sbjct: 77 QSHPQRPKEQQQSKQGGQSRP-REQRSDRPQGQRYAGNQRP 116
>EBNA6_EBV (P03204) Epstein-Barr nuclear antigen 6 (EBV nuclear antigen 6)| (EBNA-6) (EBNA-3C) (EBNA-4B) Length = 992 Score = 27.3 bits (59), Expect = 9.3 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +1 Query: 220 RTTHPGS*HPWAPW 261 R+ HP HPWAPW Sbjct: 799 RSQHPCYRHPWAPW 812 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,604,277 Number of Sequences: 219361 Number of extensions: 999248 Number of successful extensions: 2977 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2885 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2976 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
