>ref|XM_467483.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1230

 Score =  190 bits (96), Expect = 2e-45
 Identities = 219/260 (84%)
 Strand = Plus / Minus

                                                                        
Query: 158  cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 217
            ||||||||||||||  | || || || ||||| || || || || ||||| || || |||
Sbjct: 1122 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 1063

                                                                        
Query: 218  taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 277
            ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| |||
Sbjct: 1062 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 1003

                                                                        
Query: 278  gcaatgtgcgagaatagtgttgatgagatcctccacaagcttcggttctgctctttagct 337
            |||||||| |  || || |||||||| | ||||||||||||||  || |||||| | |||
Sbjct: 1002 gcaatgtgtgcaaacagggttgatgaaaccctccacaagcttctattttgctctcttgct 943

                                                                        
Query: 338  agttctattgcctttaatgttctcttggtcaccactacttcatgcattccagctaaacat 397
            | | ||||||||| || |||||||||||| |||||||| |||||||||||||||||||| 
Sbjct: 942  aatgctattgcctctagtgttctcttggttaccactacctcatgcattccagctaaacac 883

                                
Query: 398  tcaccaccggtaagccattc 417
            || ||||| |||||||||||
Sbjct: 882  tccccaccagtaagccattc 863

>ref|XM_506940.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.18 mRNA
          Length = 1650

 Score =  190 bits (96), Expect = 2e-45
 Identities = 219/260 (84%)
 Strand = Plus / Minus

                                                                        
Query: 158  cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 217
            ||||||||||||||  | || || || ||||| || || || || ||||| || || |||
Sbjct: 1248 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 1189

                                                                        
Query: 218  taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 277
            ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| |||
Sbjct: 1188 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 1129

                                                                        
Query: 278  gcaatgtgcgagaatagtgttgatgagatcctccacaagcttcggttctgctctttagct 337
            |||||||| |  || || |||||||| | ||||||||||||||  || |||||| | |||
Sbjct: 1128 gcaatgtgtgcaaacagggttgatgaaaccctccacaagcttctattttgctctcttgct 1069

                                                                        
Query: 338  agttctattgcctttaatgttctcttggtcaccactacttcatgcattccagctaaacat 397
            | | ||||||||| || |||||||||||| |||||||| |||||||||||||||||||| 
Sbjct: 1068 aatgctattgcctctagtgttctcttggttaccactacctcatgcattccagctaaacac 1009

                                
Query: 398  tcaccaccggtaagccattc 417
            || ||||| |||||||||||
Sbjct: 1008 tccccaccagtaagccattc 989

>dbj|AK121801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097G14, full
            insert sequence
          Length = 1632

 Score =  190 bits (96), Expect = 2e-45
 Identities = 219/260 (84%)
 Strand = Plus / Minus

                                                                        
Query: 158  cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 217
            ||||||||||||||  | || || || ||||| || || || || ||||| || || |||
Sbjct: 1122 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 1063

                                                                        
Query: 218  taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 277
            ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| |||
Sbjct: 1062 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 1003

                                                                        
Query: 278  gcaatgtgcgagaatagtgttgatgagatcctccacaagcttcggttctgctctttagct 337
            |||||||| |  || || |||||||| | ||||||||||||||  || |||||| | |||
Sbjct: 1002 gcaatgtgtgcaaacagggttgatgaaaccctccacaagcttctattttgctctcttgct 943

                                                                        
Query: 338  agttctattgcctttaatgttctcttggtcaccactacttcatgcattccagctaaacat 397
            | | ||||||||| || |||||||||||| |||||||| |||||||||||||||||||| 
Sbjct: 942  aatgctattgcctctagtgttctcttggttaccactacctcatgcattccagctaaacac 883

                                
Query: 398  tcaccaccggtaagccattc 417
            || ||||| |||||||||||
Sbjct: 882  tccccaccagtaagccattc 863

>dbj|AK067050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A12, full
            insert sequence
          Length = 1650

 Score =  182 bits (92), Expect = 6e-43
 Identities = 218/260 (83%)
 Strand = Plus / Minus

                                                                        
Query: 158  cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 217
            ||||||||||||||  | || || || ||||| || || || || ||||| || || |||
Sbjct: 1248 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 1189

                                                                        
Query: 218  taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 277
            ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| |||
Sbjct: 1188 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 1129

                                                                        
Query: 278  gcaatgtgcgagaatagtgttgatgagatcctccacaagcttcggttctgctctttagct 337
            |||||||| |  || || |||||||| | ||||||||||||||  || |||||| | |||
Sbjct: 1128 gcaatgtgtgcaaacagggttgatgaaaccctccacaagcttctattttgctctcttgct 1069

                                                                        
Query: 338  agttctattgcctttaatgttctcttggtcaccactacttcatgcattccagctaaacat 397
            | | ||||||||| || ||||||||| || |||||||| |||||||||||||||||||| 
Sbjct: 1068 aatgctattgcctctagtgttctcttagttaccactacctcatgcattccagctaaacac 1009

                                
Query: 398  tcaccaccggtaagccattc 417
            || ||||| |||||||||||
Sbjct: 1008 tccccaccagtaagccattc 989

>gb|BT018944.1| Zea mays clone Contig92.F mRNA sequence
          Length = 777

 Score =  141 bits (71), Expect = 2e-30
 Identities = 188/227 (82%)
 Strand = Plus / Plus

                                                                       
Query: 191 acatactccccggcacatataggcggataactatgagcattgggtgcttcagcaaagtgg 250
           ||||| ||||| || |||||||| |||||   ||||||||  |||| |||||||||||||
Sbjct: 290 acataatccccagcgcatataggtggataggaatgagcatcaggtgtttcagcaaagtgg 349

                                                                       
Query: 251 cccaatggcttgagcgtcgcatcggaagcaatgtgcgagaatagtgttgatgagatcctc 310
           || |  ||||| ||  | ||||| ||||||||||||| ||| ||||||||||| | ||||
Sbjct: 350 ccgagcggcttaagaattgcatccgaagcaatgtgcgcgaacagtgttgatgaaaccctc 409

                                                                       
Query: 311 cacaagcttcggttctgctctttagctagttctattgcctttaatgttctcttggtcacc 370
           ||||||||||  ||||| ||||| |||||  |||| |||| || ||| ||||| || |||
Sbjct: 410 cacaagcttctattctgttctttcgctagcgctatggcctctagtgtcctcttagttacc 469

                                                          
Query: 371 actacttcatgcattccagctaaacattcaccaccggtaagccattc 417
           ||||| |||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 470 actacctcatgcattccagccaaacaatcgccaccagtaagccattc 516

>gb|BT018705.1| Zea mays clone EL01N0515E01.d mRNA sequence
          Length = 1290

 Score =  141 bits (71), Expect = 2e-30
 Identities = 188/227 (82%)
 Strand = Plus / Minus

                                                                       
Query: 191 acatactccccggcacatataggcggataactatgagcattgggtgcttcagcaaagtgg 250
           ||||| ||||| || |||||||| |||||   ||||||||  |||| |||||||||||||
Sbjct: 969 acataatccccagcgcatataggtggataggaatgagcatcaggtgtttcagcaaagtgg 910

                                                                       
Query: 251 cccaatggcttgagcgtcgcatcggaagcaatgtgcgagaatagtgttgatgagatcctc 310
           || |  ||||| ||  | ||||| ||||||||||||| ||| ||||||||||| | ||||
Sbjct: 909 ccgagcggcttaagaattgcatccgaagcaatgtgcgcgaacagtgttgatgaaaccctc 850

                                                                       
Query: 311 cacaagcttcggttctgctctttagctagttctattgcctttaatgttctcttggtcacc 370
           ||||||||||  ||||| ||||| |||||  |||| |||| || ||| ||||| || |||
Sbjct: 849 cacaagcttctattctgttctttcgctagcgctatggcctctagtgtcctcttagttacc 790

                                                          
Query: 371 actacttcatgcattccagctaaacattcaccaccggtaagccattc 417
           ||||| |||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 789 actacctcatgcattccagccaaacaatcgccaccagtaagccattc 743

>gb|AY108869.1| Zea mays PCO130984 mRNA sequence
          Length = 1058

 Score =  141 bits (71), Expect = 2e-30
 Identities = 188/227 (82%)
 Strand = Plus / Minus

                                                                       
Query: 191 acatactccccggcacatataggcggataactatgagcattgggtgcttcagcaaagtgg 250
           ||||| ||||| || |||||||| |||||   ||||||||  |||| |||||||||||||
Sbjct: 724 acataatccccagcgcatataggtggataggaatgagcatcaggtgtttcagcaaagtgg 665

                                                                       
Query: 251 cccaatggcttgagcgtcgcatcggaagcaatgtgcgagaatagtgttgatgagatcctc 310
           || |  ||||| ||  | ||||| ||||||||||||| ||| ||||||||||| | ||||
Sbjct: 664 ccgagcggcttaagaattgcatccgaagcaatgtgcgcgaacagtgttgatgaaaccctc 605

                                                                       
Query: 311 cacaagcttcggttctgctctttagctagttctattgcctttaatgttctcttggtcacc 370
           ||||||||||  ||||| ||||| |||||  |||| |||| || ||| ||||| || |||
Sbjct: 604 cacaagcttctattctgttctttcgctagcgctatggcctctagtgtcctcttagttacc 545

                                                          
Query: 371 actacttcatgcattccagctaaacattcaccaccggtaagccattc 417
           ||||| |||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 544 actacctcatgcattccagccaaacaatcgccaccagtaagccattc 498

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  115 bits (58), Expect = 1e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                            
Query: 296      gttgatgagatcctccacaagcttcggttctgctctttagctagttctattgcctttaat 355
                |||||||| | ||||||||||||||  || |||||| | |||| | ||||||||| || |
Sbjct: 29803878 gttgatgaaaccctccacaagcttctattttgctctcttgctaatgctattgcctctagt 29803819

                                                                            
Query: 356      gttctcttggtcaccactacttcatgcattccagctaaacattcaccaccggtaagccat 415
                ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||||||
Sbjct: 29803818 gttctcttggttaccactacctcatgcattccagctaaacactccccaccagtaagccat 29803759

                  
Query: 416      tc 417
                ||
Sbjct: 29803758 tc 29803757



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                            
Query: 158      cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 217
                ||||||||||||||  | || || || ||||| || || || || ||||| || || |||
Sbjct: 29804132 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 29804073

                                                                            
Query: 218      taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 277
                ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| |||
Sbjct: 29804072 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 29804013

                        
Query: 278      gcaatgtg 285
                ||||||||
Sbjct: 29804012 gcaatgtg 29804005

>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score =  115 bits (58), Expect = 1e-22
 Identities = 106/122 (86%)
 Strand = Plus / Minus

                                                                         
Query: 296   gttgatgagatcctccacaagcttcggttctgctctttagctagttctattgcctttaat 355
             |||||||| | ||||||||||||||  || |||||| | |||| | ||||||||| || |
Sbjct: 60223 gttgatgaaaccctccacaagcttctattttgctctcttgctaatgctattgcctctagt 60164

                                                                         
Query: 356   gttctcttggtcaccactacttcatgcattccagctaaacattcaccaccggtaagccat 415
             ||||||||||| |||||||| |||||||||||||||||||| || ||||| |||||||||
Sbjct: 60163 gttctcttggttaccactacctcatgcattccagctaaacactccccaccagtaagccat 60104

               
Query: 416   tc 417
             ||
Sbjct: 60103 tc 60102



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 108/128 (84%)
 Strand = Plus / Minus

                                                                         
Query: 158   cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 217
             ||||||||||||||  | || || || ||||| || || || || ||||| || || |||
Sbjct: 60477 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 60418

                                                                         
Query: 218   taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 277
             ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| |||
Sbjct: 60417 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 60358

                     
Query: 278   gcaatgtg 285
             ||||||||
Sbjct: 60357 gcaatgtg 60350

>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                          
Query: 342    ctattgcctttaatgttctcttggtcaccactacttcatgcattccagctaaacattcac 401
              ||||||||| || |||||||||||| |||||||| |||||||||||||||||||| || |
Sbjct: 172811 ctattgcctctagtgttctcttggttaccactacctcatgcattccagctaaacactccc 172752

                              
Query: 402    caccggtaagccattc 417
              |||| |||||||||||
Sbjct: 172751 caccagtaagccattc 172736

>gb|AF463836.1| Oryza sativa (japonica cultivar-group) transgenic plant p0841
           integrated T-DNA(Ds), flanking sequence
          Length = 601

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 107/128 (83%)
 Strand = Plus / Plus

                                                                       
Query: 158 cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 217
           ||||||||||||||  | || || || ||||| || || || || ||||| || || |||
Sbjct: 324 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 383

                                                                       
Query: 218 taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 277
           ||||||||||||| || |||||||||||||||||||||||||||  | || ||||| |||
Sbjct: 384 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaggggttgcatcagaa 443

                   
Query: 278 gcaatgtg 285
           ||||||||
Sbjct: 444 gcaatgtg 451

>gb|AY110936.1| Zea mays CL47347_1 mRNA sequence
          Length = 722

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 269 gcatcggaagcaatgtgcgagaatagtgttgatg 302
           ||||| ||||||||||||| ||| ||||||||||
Sbjct: 43  gcatccgaagcaatgtgcgcgaacagtgttgatg 76

>gb|BC076594.1| Mus musculus contactin 6, mRNA (cDNA clone MGC:100179
            IMAGE:30649661), complete cds
          Length = 3613

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   catagatagaaaggtatgtg 32
            ||||||||||||||||||||
Sbjct: 1311 catagatagaaaggtatgtg 1292

>gb|AC087900.19| Mus musculus strain C57BL/6J clone rp23-171i6 map 19, complete sequence
          Length = 195066

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   tggtctgtgtgtgcctagag 147
             ||||||||||||||||||||
Sbjct: 52177 tggtctgtgtgtgcctagag 52196

>gb|AC111648.6| Rattus norvegicus 2 BAC CH230-103N18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 235343

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    gagtgcaaccttccctttca 164
              ||||||||||||||||||||
Sbjct: 149147 gagtgcaaccttccctttca 149166

>ref|NM_017383.3| Mus musculus contactin 6 (Cntn6), mRNA
          Length = 3613

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   catagatagaaaggtatgtg 32
            ||||||||||||||||||||
Sbjct: 1311 catagatagaaaggtatgtg 1292

>dbj|AK052972.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930005M21 product:contactin 6, full
            insert sequence
          Length = 3468

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   catagatagaaaggtatgtg 32
            ||||||||||||||||||||
Sbjct: 1204 catagatagaaaggtatgtg 1185

>gb|AC153023.2| Mus musculus 6 BAC RP23-253M3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 160526

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    catagatagaaaggtatgtg 32
             ||||||||||||||||||||
Sbjct: 18281 catagatagaaaggtatgtg 18262

>gb|AC153990.2| Mus musculus 6 BAC RP24-293L1 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 172768

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    catagatagaaaggtatgtg 32
             ||||||||||||||||||||
Sbjct: 40459 catagatagaaaggtatgtg 40478

>dbj|AB032602.1| Mus musculus mNB-3 mRNA for neural recognition molecule NB-3,
           complete cds
          Length = 3087

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  catagatagaaaggtatgtg 32
           ||||||||||||||||||||
Sbjct: 997 catagatagaaaggtatgtg 978


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,956,961
Number of Sequences: 3902068
Number of extensions: 2956961
Number of successful extensions: 53891
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53837
Number of HSP's gapped (non-prelim): 44
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)