ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet45g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL53_HCMVA (P16794) Protein UL53 (HFRF2 protein) 30 1.9
2NIMA_EMENI (P11837) G2-specific protein kinase nimA (EC 2.7.11.1... 29 2.5
3PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase ... 28 4.3
4C12A5_DROME (Q9VE01) Probable cytochrome P450 12a5, mitochondria... 28 5.7
5C12A4_DROME (Q9VE00) Probable cytochrome P450 12a4, mitochondria... 28 5.7
6PTPRG_HUMAN (P23470) Receptor-type tyrosine-protein phosphatase ... 28 5.7
7MPIP3_CAEEL (P30634) M-phase inducer phosphatase cdc-25.3 (EC 3.... 28 5.7
8T2C2_PBCV1 (P31117) Type II restriction enzyme CviAII (EC 3.1.21... 28 7.4
9DLX5_RAT (P50575) Homeobox protein DLX-5 (DLX-3) (RDLX) 27 9.7
10DLX5_MOUSE (P70396) Homeobox protein DLX-5 27 9.7
11DLX5_HUMAN (P56178) Homeobox protein DLX-5 27 9.7
12CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph... 27 9.7

>UL53_HCMVA (P16794) Protein UL53 (HFRF2 protein)|
          Length = 376

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 299 GCPPSARSSSHQPHACPPSSALEWNPY 219
           GC PS+ S S  PH  PPS A + + Y
Sbjct: 321 GCGPSSSSQSTPPHLHPPSQATQPHHY 347



to top

>NIMA_EMENI (P11837) G2-specific protein kinase nimA (EC 2.7.11.1) (Never in|
           mitosis)
          Length = 699

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 33  SFSSCAYTSQTKRKAPPGAWSPRAGKVSNPFLQLGSR 143
           S S C+   ++  + PP  W P   ++ +PFL  G +
Sbjct: 657 SRSGCSVPMKSADRDPPAVWDPERDEMPSPFLARGRK 693



to top

>PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase gamma precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma)
           (R-PTP-gamma)
          Length = 1442

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 79  HPVRGRRAPAKFQILFYN*VPDRPDA 156
           H V GRR P + QI FYN  PD  D+
Sbjct: 163 HSVNGRRFPVEMQIFFYN--PDDFDS 186



to top

>C12A5_DROME (Q9VE01) Probable cytochrome P450 12a5, mitochondrial precursor (EC|
           1.14.-.-) (CYPXIIA5)
          Length = 536

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 281 RSSSHQPHACPPSSALEWNPYVFLPMGNG 195
           R++S     CP +     NP+VFLP G G
Sbjct: 450 RNASDSAGKCPANDLKTKNPFVFLPFGFG 478



to top

>C12A4_DROME (Q9VE00) Probable cytochrome P450 12a4, mitochondrial precursor (EC|
           1.14.-.-) (CYPXIIA4)
          Length = 536

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 281 RSSSHQPHACPPSSALEWNPYVFLPMGNG 195
           RS       CP +     NP+VFLP G G
Sbjct: 450 RSPKDSESKCPANELKSTNPFVFLPFGFG 478



to top

>PTPRG_HUMAN (P23470) Receptor-type tyrosine-protein phosphatase gamma precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma)
           (R-PTP-gamma)
          Length = 1445

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 79  HPVRGRRAPAKFQILFYN*VPDRPDA 156
           H + GRR P + QI FYN  PD  D+
Sbjct: 163 HSINGRRFPVEMQIFFYN--PDDFDS 186



to top

>MPIP3_CAEEL (P30634) M-phase inducer phosphatase cdc-25.3 (EC 3.1.3.48) (Cell|
           division cycle-related protein 25.3)
          Length = 316

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 29  HQFFFLRIYKPNKKKSATRCVVAARRQSFKSFFTIRFPIDRMQQH 163
           HQF    + KP KK S+T  V++    S     T+R   D + +H
Sbjct: 269 HQFHKKNVSKPMKKWSSTTSVISILTTSGTRISTLRQTCDPIHEH 313



to top

>T2C2_PBCV1 (P31117) Type II restriction enzyme CviAII (EC 3.1.21.4)|
           (Endonuclease CviAII) (R.CviAII)
          Length = 342

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 41  FLRIYKPNKKKSATRCVVAARRQS 112
           F +IYK + +KS T+CVV+ ++ +
Sbjct: 98  FSKIYKEDSRKSKTQCVVSEKKDN 121



to top

>DLX5_RAT (P50575) Homeobox protein DLX-5 (DLX-3) (RDLX)|
          Length = 289

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 287 SARSSSHQPHACPPSS 240
           S+RS SH PHA PP+S
Sbjct: 229 SSRSLSHHPHAHPPTS 244



to top

>DLX5_MOUSE (P70396) Homeobox protein DLX-5|
          Length = 289

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 287 SARSSSHQPHACPPSS 240
           S+RS SH PHA PP+S
Sbjct: 229 SSRSLSHHPHAHPPTS 244



to top

>DLX5_HUMAN (P56178) Homeobox protein DLX-5|
          Length = 289

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 287 SARSSSHQPHACPPSS 240
           S+RS SH PHA PP+S
Sbjct: 229 SSRSLSHHPHAHPPTS 244



to top

>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 296  CPPSARSSSHQPHACPPS 243
            CPPSARSS H P +   S
Sbjct: 1064 CPPSARSSPHSPWSAASS 1081


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,476,034
Number of Sequences: 219361
Number of extensions: 1033509
Number of successful extensions: 2956
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2953
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top