ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet44d09 |
|---|---|
| Clone Library Name | barley_pub |
>Y04K_BPT4 (P07069) Hypothetical 12.6 kDa protein in pin-nrdC intergenic| region Length = 106 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/48 (39%), Positives = 21/48 (43%) Frame = +2 Query: 44 NPKHNPFALTKPSFL*TYASTKYHPICNSPWYYDVPFFSLCETRESVI 187 +PKHN S S YH S WYY VP L E RE V+ Sbjct: 58 SPKHNVHVAVNES-----RSGSYH----SDWYYAVPTVELVELRERVV 96
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 29.6 bits (65), Expect = 3.3 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +2 Query: 152 FFSLCETRESVIDIVTDLLQFSQD 223 F +LCE R++ +D+++ LLQ QD Sbjct: 3162 FANLCENRQNRLDVISSLLQILQD 3185
>RL2_NEIMB (Q9K1I5) 50S ribosomal protein L2| Length = 277 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -2 Query: 214 KLQEISYD----VYYRLSCLAKGKERNIIVPRTVTDGMVL 107 K++ I YD + L C A G+ R II PR + G VL Sbjct: 77 KVERIEYDPNRTAFIALLCYADGERRYIIAPRGIQAGAVL 116
>RL2_NEIMA (Q9JX12) 50S ribosomal protein L2| Length = 277 Score = 29.6 bits (65), Expect = 3.3 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -2 Query: 214 KLQEISYD----VYYRLSCLAKGKERNIIVPRTVTDGMVL 107 K++ I YD + L C A G+ R II PR + G VL Sbjct: 77 KVERIEYDPNRTAFIALLCYADGERRYIIAPRGIQAGAVL 116
>RF1M_MOUSE (Q8K126) Peptide chain release factor 1, mitochondrial precursor| (MRF-1) Length = 446 Score = 29.6 bits (65), Expect = 3.3 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -1 Query: 407 LHHVARHLQAQKIQPLMVYQLGLHRPWSVPDDPVANRRAQTDHHGFQDIQVL 252 LHH A + + + Y+ G+HR +P+ +++ R Q H G + VL Sbjct: 236 LHHAAARISGDSVYKHLKYEGGIHRVQRIPEVGLSS-RMQRIHTGTMSVIVL 286
>RL2_CHRVO (Q7NQF5) 50S ribosomal protein L2| Length = 277 Score = 29.3 bits (64), Expect = 4.3 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -2 Query: 214 KLQEISYD----VYYRLSCLAKGKERNIIVPRTVTDGMVL 107 K++ I YD + L C A G+ R II PR V G VL Sbjct: 77 KVERIEYDPNRTAHIALLCYADGERRYIIAPRGVKVGAVL 116
>RF1M_HUMAN (O75570) Peptide chain release factor 1, mitochondrial precursor| (MRF-1) Length = 445 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -1 Query: 407 LHHVARHLQAQKIQPLMVYQLGLHRPWSVPDDPVANRRAQTDHHGFQDIQVL 252 LHH A + + + Y+ G+HR +P+ +++ R Q H G + VL Sbjct: 235 LHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSS-RMQRIHTGTMSVIVL 285
>POLG_EC11G (P29813) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2194 Score = 28.9 bits (63), Expect = 5.7 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2 Query: 175 SCLAKGKERNIIVPRTVTDGM-VLGRCICSEKTWFSQSKRVVFGVN 41 +C+ + R++++ T G V+ RC CS ++ QSK + VN Sbjct: 890 NCVWEDYNRDLLISTTTAHGCDVIARCRCSTGVYYCQSKGKHYPVN 935
>PLCC_MOUSE (Q9D517) 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma (EC| 2.3.1.51) (1-AGP acyltransferase 3) (1-AGPAT 3) (Lysophosphatidic acid acyltransferase-gamma) (LPAAT-gamma) (1-acylglycerol-3-phosphate O-acyltransferase 3) Length = 376 Score = 28.5 bits (62), Expect = 7.4 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Frame = -1 Query: 434 LCTDDILPTLHHVARHLQAQKIQPLMVYQLGLHRPWSVPDDPVANRRAQTDHHGFQDIQV 255 LCT + P H+ R + + L + L WS + + +A DH G + + V Sbjct: 33 LCTLALWPISKHLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHVVV 92 Query: 254 LLIDYF-YDALC 222 +L F D LC Sbjct: 93 ILNHNFEIDFLC 104
>MCR_RAT (P22199) Mineralocorticoid receptor (MR)| Length = 981 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 152 FFSLCETRESVIDIVTDLLQFSQDTMRRRSSL*VE 256 F+ L + +S+ D+V+DLL+F T R +L VE Sbjct: 918 FYQLTKLLDSMHDLVSDLLEFCFYTFRESQALKVE 952
>MCR_CHICK (Q8QHI2) Mineralocorticoid receptor (MR) (Fragment)| Length = 147 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 152 FFSLCETRESVIDIVTDLLQFSQDTMRRRSSL*VE 256 F+ L + +S+ D+V+DLL+F T R +L VE Sbjct: 110 FYQLTKLLDSMHDLVSDLLEFCFYTFRESQALKVE 144
>MDN1_HUMAN (Q9NU22) Midasin (MIDAS-containing protein)| Length = 5596 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/46 (30%), Positives = 24/46 (52%) Frame = +2 Query: 272 IHDDLSEPSDWRQDHQAHSKDDADPVGTP*EAESFGLVDGEPHDAG 409 + ++ E ++R+ H KD AD + P E+ G DG+ +AG Sbjct: 3564 LSEEEEEEREFRKQFPLHEKDFADILVQPTLEENKGTSDGQEEEAG 3609
>MCR_PIG (P79404) Mineralocorticoid receptor (MR) (Fragment)| Length = 164 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 152 FFSLCETRESVIDIVTDLLQFSQDTMRRRSSL*VE 256 F+ L + +S+ D+V+DLL+F T R +L VE Sbjct: 119 FYQLTKLLDSMHDLVSDLLEFCFYTFRESQALKVE 153
>GUNC_PSEFL (P27033) Endoglucanase C precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (EGC) (Cellodextrinase C) Length = 748 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/79 (29%), Positives = 32/79 (40%) Frame = -3 Query: 402 SCGSPSTSPKDSASHGVPTGXXXXXXXXXXXCRQSEGSDRSSWIPRHTSSTHRLLLRRIV 223 SC SPST A +G+ G R S SS +P +SS+ + Sbjct: 208 SCISPSTCSAQPAPYGIVGGSSSPSSISSSSVRSSSS---SSVVPPSSSSSSSV---PSS 261 Query: 222 SCENCKRSVTMSITDSLVS 166 SC + S +S + S VS Sbjct: 262 SCSSVSSSSVVSSSSSSVS 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,966,078 Number of Sequences: 219361 Number of extensions: 1346313 Number of successful extensions: 3760 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3648 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3758 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
