ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet44a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X54643.1|HVAMY1G Hordeum vugare Amy1 gene for alpha-amylase ... 64 4e-07
2emb|X15226.1|HVAMY152 Barley Amy gene for alpha amylase (clone g... 54 4e-04
3gb|AC136729.7| Mus musculus chromosome 3, clone RP23-175I24, com... 46 0.092
4gb|AC161237.8| Mus musculus chromosome 3, clone RP23-307M9, comp... 46 0.092
5ref|XM_462890.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.36
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.36
7gb|AC133601.3| Mus musculus BAC clone RP24-179O1 from chromosome... 44 0.36
8gb|AC133337.5| Oryza sativa chromosome 3 BAC OSJNBa0023A13 genom... 44 0.36
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
10gb|AC151409.2| Mus musculus BAC clone RP24-541K8 from 18, comple... 44 0.36
11gb|AC140389.3| Mus musculus BAC clone RP24-202H2 from chromosome... 42 1.4
12gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, comp... 42 1.4
13gb|AC156571.3| Mus musculus BAC clone RP23-264I19 from chromosom... 40 5.7
14ref|XM_473849.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
15gb|AC120148.13| Mus musculus chromosome 9, clone RP24-225E14, co... 40 5.7
16gb|AC122930.4| Mus musculus BAC clone RP23-13L19 from chromosome... 40 5.7
17ref|XM_785593.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.7
18emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261... 40 5.7
19emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 40 5.7
20emb|BX957274.8| Zebrafish DNA sequence from clone DKEY-155F10 in... 40 5.7
21gb|AC148590.12| Amia calva clone uoaca-5d5-1, complete sequence 40 5.7
22emb|AL832557.1|HSM803866 Homo sapiens mRNA; cDNA DKFZp547C1918 (... 40 5.7
23dbj|AK127768.1| Homo sapiens cDNA FLJ45869 fis, clone OCBBF3004908 40 5.7
24dbj|AK095740.1| Homo sapiens cDNA FLJ38421 fis, clone FEBRA2011146 40 5.7
25dbj|AK056267.1| Homo sapiens cDNA FLJ31705 fis, clone NT2RI20061... 40 5.7
26dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 40 5.7
27gb|AC008213.4|AC008213 Drosophila melanogaster, chromosome 3R, r... 40 5.7
28gb|AC005813.13|AC005813 Drosophila melanogaster, chromosome 3R, ... 40 5.7
29dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
30gb|AC066694.7| Homo sapiens BAC clone RP11-655A7 from 2, complet... 40 5.7
31gb|AF270073.1|AF270073 Staphylococcus epidermidis strain SR1 clo... 40 5.7
32emb|AL929219.16| Mouse DNA sequence from clone RP23-53I18 on chr... 40 5.7
33gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 5.7
34emb|AL929090.4| Zebrafish DNA sequence from clone CH211-14A14, c... 40 5.7
35dbj|AK104817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
36dbj|AK066289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
37gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94... 40 5.7
38gb|AC079446.30| Mus musculus strain C57BL/6J chromosome X clone ... 40 5.7
39gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 5.7
40emb|AL672268.18| Mouse DNA sequence from clone RP23-171J18 on ch... 40 5.7 
>emb|X54643.1|HVAMY1G Hordeum vugare Amy1 gene for alpha-amylase (EC 3.2.1.1)
          Length = 950

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                               
Query: 47  gtgttgaaagagattagagggattggtgaaatagtt 82
           ||||||||||||| ||||||||||||||||||||||
Sbjct: 538 gtgttgaaagagaatagagggattggtgaaatagtt 503
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>emb|X15226.1|HVAMY152 Barley Amy gene for alpha amylase (clone gRAmy152) (EC 3.2.1.1)
          Length = 2625

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 52  gaaagagattagagggattggtgaaatagtt 82
           |||||||| ||||||||||||||||||||||
Sbjct: 300 gaaagagaatagagggattggtgaaatagtt 270
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>gb|AC136729.7| Mus musculus chromosome 3, clone RP23-175I24, complete sequence
          Length = 216602

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 42     catcggtgttgaaagagattaga 64
              |||||||||||||||||||||||
Sbjct: 210918 catcggtgttgaaagagattaga 210896
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>gb|AC161237.8| Mus musculus chromosome 3, clone RP23-307M9, complete sequence
          Length = 206004

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 42     catcggtgttgaaagagattaga 64
              |||||||||||||||||||||||
Sbjct: 192768 catcggtgttgaaagagattaga 192790
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>ref|XM_462890.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 902

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 348 gttcaccttgccacgtcgcaccatcacgctcccgcagctcgacacg 393
           ||||||||||||||| ||||||   ||||| ||||||| |||||||
Sbjct: 652 gttcaccttgccacggcgcaccgctacgctgccgcagcccgacacg 607
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 348      gttcaccttgccacgtcgcaccatcacgctcccgcagctcgacacg 393
                ||||||||||||||| ||||||   ||||| ||||||| |||||||
Sbjct: 19826500 gttcaccttgccacggcgcaccgctacgctgccgcagcccgacacg 19826545
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>gb|AC133601.3| Mus musculus BAC clone RP24-179O1 from chromosome 18, complete sequence
          Length = 180978

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 256   cttatgatttccatgggcactg 277
             ||||||||||||||||||||||
Sbjct: 71511 cttatgatttccatgggcactg 71490
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>gb|AC133337.5| Oryza sativa chromosome 3 BAC OSJNBa0023A13 genomic sequence, complete
             sequence
          Length = 72745

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 348   gttcaccttgccacgtcgcaccatcacgctcccgcagctcgacacg 393
             ||||||||||||||| ||||||   ||||| ||||||| |||||||
Sbjct: 19499 gttcaccttgccacggcgcaccgctacgctgccgcagcccgacacg 19544
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 348      gttcaccttgccacgtcgcaccatcacgctcccgcagctcgacacg 393
                ||||||||||||||| ||||||   ||||| ||||||| |||||||
Sbjct: 19819527 gttcaccttgccacggcgcaccgctacgctgccgcagcccgacacg 19819572
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>gb|AC151409.2| Mus musculus BAC clone RP24-541K8 from 18, complete sequence
          Length = 179265

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 256    cttatgatttccatgggcactg 277
              ||||||||||||||||||||||
Sbjct: 143147 cttatgatttccatgggcactg 143126
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>gb|AC140389.3| Mus musculus BAC clone RP24-202H2 from chromosome 18, complete sequence
          Length = 169195

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 225   tttcatatttcatcagacagt 245
             |||||||||||||||||||||
Sbjct: 80168 tttcatatttcatcagacagt 80148
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>gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, complete sequence
          Length = 172930

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   ataccacacaaataatatcac 217
             |||||||||||||||||||||
Sbjct: 35799 ataccacacaaataatatcac 35819
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>gb|AC156571.3| Mus musculus BAC clone RP23-264I19 from chromosome 13, complete
             sequence
          Length = 196911

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    ttggtgaaatagttatttat 88
             ||||||||||||||||||||
Sbjct: 16264 ttggtgaaatagttatttat 16283
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>ref|XM_473849.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1002

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  aaagagattagagggattgg 72
           ||||||||||||||||||||
Sbjct: 81  aaagagattagagggattgg 100
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>gb|AC120148.13| Mus musculus chromosome 9, clone RP24-225E14, complete sequence
          Length = 201783

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ccttcctgccaaccctgtag 329
             ||||||||||||||||||||
Sbjct: 14074 ccttcctgccaaccctgtag 14093
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>gb|AC122930.4| Mus musculus BAC clone RP23-13L19 from chromosome 9, complete sequence
          Length = 224108

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ccttcctgccaaccctgtag 329
             ||||||||||||||||||||
Sbjct: 90653 ccttcctgccaaccctgtag 90634
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>ref|XM_785593.1| PREDICTED: Strongylocentrotus purpuratus similar to CG10877-PA
           (LOC585781), mRNA
          Length = 2658

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 338 cctccaccatgttcaccttg 357
           ||||||||||||||||||||
Sbjct: 287 cctccaccatgttcaccttg 268
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>emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261N11 on chromosome 20, complete
              sequence
          Length = 184223

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    tccaccatgttcaccttgcc 359
              ||||||||||||||||||||
Sbjct: 162695 tccaccatgttcaccttgcc 162676
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
             complete sequence
          Length = 150551

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aaagagattagagggattgg 72
             ||||||||||||||||||||
Sbjct: 79062 aaagagattagagggattgg 79043
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>emb|BX957274.8| Zebrafish DNA sequence from clone DKEY-155F10 in linkage group 9,
             complete sequence
          Length = 216817

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   atataccacacaaataatat 214
             ||||||||||||||||||||
Sbjct: 43010 atataccacacaaataatat 43029
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>gb|AC148590.12| Amia calva clone uoaca-5d5-1, complete sequence
          Length = 41968

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   cactggcatatttcatattt 234
             ||||||||||||||||||||
Sbjct: 20303 cactggcatatttcatattt 20322
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>emb|AL832557.1|HSM803866 Homo sapiens mRNA; cDNA DKFZp547C1918 (from clone DKFZp547C1918)
          Length = 2381

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  tccaccatgttcaccttgcc 359
            ||||||||||||||||||||
Sbjct: 1784 tccaccatgttcaccttgcc 1803
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>dbj|AK127768.1| Homo sapiens cDNA FLJ45869 fis, clone OCBBF3004908
          Length = 3439

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  tccaccatgttcaccttgcc 359
            ||||||||||||||||||||
Sbjct: 2817 tccaccatgttcaccttgcc 2836
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>dbj|AK095740.1| Homo sapiens cDNA FLJ38421 fis, clone FEBRA2011146
          Length = 3039

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  tccaccatgttcaccttgcc 359
            ||||||||||||||||||||
Sbjct: 2417 tccaccatgttcaccttgcc 2436
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>dbj|AK056267.1| Homo sapiens cDNA FLJ31705 fis, clone NT2RI2006183, weakly similar to
            Proline-rich protein M14 precursor
          Length = 2169

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  tccaccatgttcaccttgcc 359
            ||||||||||||||||||||
Sbjct: 1547 tccaccatgttcaccttgcc 1566
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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 68     attggtgaaatagttatttatgtt 91
              |||||||||||| |||||||||||
Sbjct: 710742 attggtgaaatacttatttatgtt 710765
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>gb|AC008213.4|AC008213 Drosophila melanogaster, chromosome 3R, region 97B-97B, BAC clone
              BACR15K06, complete sequence
          Length = 183370

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tatttatgttttccaaacaa 101
              ||||||||||||||||||||
Sbjct: 100456 tatttatgttttccaaacaa 100475
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>gb|AC005813.13|AC005813 Drosophila melanogaster, chromosome 3R, region 97B2-97B9, BAC clone
             BACR48G23, complete sequence
          Length = 166543

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tatttatgttttccaaacaa 101
             ||||||||||||||||||||
Sbjct: 57589 tatttatgttttccaaacaa 57608
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 53       aaagagattagagggattgg 72
                ||||||||||||||||||||
Sbjct: 30981689 aaagagattagagggattgg 30981670
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>gb|AC066694.7| Homo sapiens BAC clone RP11-655A7 from 2, complete sequence
          Length = 120381

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    atttatgttttccaaacaat 102
             ||||||||||||||||||||
Sbjct: 85731 atttatgttttccaaacaat 85750
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>gb|AF270073.1|AF270073 Staphylococcus epidermidis strain SR1 clone step.1047b08 genomic
            sequence
          Length = 3047

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   ttagagggattggtgaaata 79
            ||||||||||||||||||||
Sbjct: 1603 ttagagggattggtgaaata 1584
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>emb|AL929219.16| Mouse DNA sequence from clone RP23-53I18 on chromosome 2, complete
             sequence
          Length = 164107

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   ctctgctttctgacacaagg 307
             ||||||||||||||||||||
Sbjct: 64837 ctctgctttctgacacaagg 64856
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      ttagagggattggtgaaata 79
               ||||||||||||||||||||
Sbjct: 2022517 ttagagggattggtgaaata 2022498
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>emb|AL929090.4| Zebrafish DNA sequence from clone CH211-14A14, complete sequence
          Length = 178077

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   atataccacacaaataatat 214
             ||||||||||||||||||||
Sbjct: 45994 atataccacacaaataatat 45975
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>dbj|AK104817.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H12, full
           insert sequence
          Length = 1261

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  aaagagattagagggattgg 72
           ||||||||||||||||||||
Sbjct: 187 aaagagattagagggattgg 206
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>dbj|AK066289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063M01, full
           insert sequence
          Length = 1327

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  aaagagattagagggattgg 72
           ||||||||||||||||||||
Sbjct: 208 aaagagattagagggattgg 227
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>gb|AE003756.3| Drosophila melanogaster chromosome 3R, section 94 of 118 of the complete
              sequence
          Length = 322332

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tatttatgttttccaaacaa 101
              ||||||||||||||||||||
Sbjct: 161349 tatttatgttttccaaacaa 161368
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>gb|AC079446.30| Mus musculus strain C57BL/6J chromosome X clone rp23-9p22, complete
              sequence
          Length = 223309

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    tgcttatgatttccatgggc 273
              ||||||||||||||||||||
Sbjct: 190090 tgcttatgatttccatgggc 190071
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      ttagagggattggtgaaata 79
               ||||||||||||||||||||
Sbjct: 2029070 ttagagggattggtgaaata 2029051
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>emb|AL672268.18| Mouse DNA sequence from clone RP23-171J18 on chromosome X, complete
             sequence
          Length = 187999

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   tgcttatgatttccatgggc 273
             ||||||||||||||||||||
Sbjct: 64374 tgcttatgatttccatgggc 64355


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,912,393
Number of Sequences: 3902068
Number of extensions: 3912393
Number of successful extensions: 83807
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83638
Number of HSP's gapped (non-prelim): 169
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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