>MEGF6_MOUSE (Q80V70) Multiple epidermal growth factor-like domains 6 (EGF-like|
           domain-containing protein 3) (Multiple EGF-like domain
           protein 3) (Fragment)
          Length = 656

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
 Frame = +1

Query: 220 AQACLCHSSASCR------HCTPRFRDRALACSPTHSTSQFCRTRRHP-PAPGTPWPTHR 378
           AQ C C   ASC       HC P F      C        F +   HP   PG  W  H 
Sbjct: 258 AQRCHCPPGASCHHVSGECHCPPGF--TGPGCEQACQPGTFGKDCEHPCQCPGETWACHP 315

Query: 379 A 381
           A
Sbjct: 316 A 316

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
            (EGF-like domain-containing protein 3) (Multiple EGF-like
            domain protein 3)
          Length = 1574

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
 Frame = +1

Query: 220  AQACLCHSSASCRH------CTPRFRDRALACSPTHSTSQFCRTRRH-PPAPGTPW 366
            AQ CLC ++ASC H      C P F    L+C        F +   H    PG  W
Sbjct: 1176 AQRCLCPTNASCHHVTGECRCPPGF--TGLSCEQACQPGTFGKDCEHLCQCPGETW 1229

>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7|
          Length = 920

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 310 STSQFCRTRRHPPAPGTPWPTHRAP 384
           ST+QF  +   PPAP   +P HR P
Sbjct: 287 STAQFAPSPGQPPAPSPSYPGHRLP 311

>SDHD_SHIFL (Q83MK8) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase)|
           (DSD)
          Length = 442

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 39  YSKILHPQIKQRLAWYIWATNCVGNINMSKASLTSR 146
           YSK+L P+ KQ  + Y  A    GN+ +S   +++R
Sbjct: 146 YSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSAR 181

>SDHD_ECOLI (P00926) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase)|
           (DSD)
          Length = 442

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 39  YSKILHPQIKQRLAWYIWATNCVGNINMSKASLTSR 146
           YSK+L P+ KQ  + Y  A    GN+ +S   +++R
Sbjct: 146 YSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSAR 181

>SDHD_ECOL6 (Q8FFF4) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase)|
           (DSD)
          Length = 442

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 39  YSKILHPQIKQRLAWYIWATNCVGNINMSKASLTSR 146
           YSK+L P+ KQ  + Y  A    GN+ +S   +++R
Sbjct: 146 YSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSAR 181

>SDHD_ECO57 (Q8XCK5) D-serine dehydratase (EC 4.3.1.18) (D-serine deaminase)|
           (DSD)
          Length = 442

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 39  YSKILHPQIKQRLAWYIWATNCVGNINMSKASLTSR 146
           YSK+L P+ KQ  + Y  A    GN+ +S   +++R
Sbjct: 146 YSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSAR 181

>MURG_DECAR (Q47AA4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 352

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
 Frame = +2

Query: 149 GLKDGLLAQLLPRHSFPYYLVKEVLKRVCAIARRLV--VTVLPGF--GIEH*HALRRIVP 316
           G  +G+ A+L+P+H F    +K    R   I R+L+  V +L GF  G++   A+R++ P
Sbjct: 37  GNPEGMEARLVPQHGFEMVWIKFSALRGKGILRKLLLPVNLLRGFWQGLK---AIRQVKP 93

Query: 317 PNFAELGGIL 346
                +GG +
Sbjct: 94  NVVLGMGGYI 103

>SENP3_MOUSE (Q9EP97) Sentrin-specific protease 3 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
           protease 3) (Smt3-specific isopeptidase 1) (Smt3ip1)
          Length = 568

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -3

Query: 348 WRMPPSSAKLGGTMRRRAC*CSIPKPGSTVTTRRRAMAQTRL-----STSLT 208
           WR+PP   +LG + R RA   S  K  S    RRRAM   ++     STSLT
Sbjct: 90  WRLPPRWGQLGASQRSRALRPSHRKTCS--QRRRRAMRAFQMLLYSKSTSLT 139

>TS11_GIALA (Q03185) Major surface trophozoite antigen 11 precursor|
          Length = 667

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 235 CHSSASCRHCTPRFRDRALACSPTHSTSQFC 327
           C+    C+ C   F     ACSP H + + C
Sbjct: 350 CNDQGQCQTCNDGFYKNGDACSPCHESCKTC 380

>SF3B3_HUMAN (Q15393) Splicing factor 3B subunit 3 (Spliceosome-associated|
           protein 130) (SAP 130) (SF3b130) (Pre-mRNA splicing
           factor SF3b 130 kDa subunit) (STAF130)
          Length = 1217

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = -2

Query: 346 EDAAEFGKIGRYYASESM-------LVLDPETGEYSDDKTPSYGTDTLEHFFDKVIREGM 188
           ++  E G IG  Y +  +        VLDP TG+ SD +T   G+  +     K+ R  M
Sbjct: 652 DELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPV-----KLFRVRM 706

Query: 187 AGQE 176
            GQE
Sbjct: 707 QGQE 710

>SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
           protease 3)
          Length = 574

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = -3

Query: 348 WRMPPSSAKLGGTMRRRAC*CSIPKPGSTVTTRRRAMAQTRL-----STSLT 208
           WR+PP  ++LG + R RA   S  K  S    RRRAM   ++     STSLT
Sbjct: 96  WRLPPRWSQLGTSQRPRALRPSHRKTCS--QRRRRAMRAFQMLLYSKSTSLT 145

>TSA4_GIALA (P21849) Major surface-labeled trophozoite antigen 417 precursor|
          Length = 713

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +1

Query: 217 SAQACLCHSSASCRHCTPRFRDRALACSPTHSTSQFC 327
           +A    C     C+ C   F     ACSP H + + C
Sbjct: 396 AANCKTCDDQGQCQACNDGFYKNGDACSPCHESCKTC 432

>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)|
           (Zinc finger protein Cezanne 2) (OTU domain-containing
           protein 7)
          Length = 926

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 271 RFRDRALACSPTHSTSQFCRTRRHPPAPGTPWPTHRAP 384
           R RD A A +   +T+   R  R P A G P P   +P
Sbjct: 675 RRRDAAAAAAAATATATVKRPARRPEAEGAPGPERASP 712

>ARGR_CORDI (Q6NHG5) Arginine repressor|
          Length = 163

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 301 ESMLVLDPETGEYSDDKTPSYGTDTLEHFFDKVIREGMAGQELGEQTIF 155
           + +LV    +G  +  +TP  G   L  F D+V  + + G   G+ T+F
Sbjct: 92  DDLLVSVDHSGNIAVLRTPPAGAPFLASFIDRVGMDEVVGTIAGDDTVF 140

>SNPC4_MOUSE (Q8BP86) snRNA-activating protein complex subunit 4 (SNAPc subunit|
           4) (snRNA-activating protein complex 190 kDa subunit)
           (SNAPc 190 kDa subunit)
          Length = 1333

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 318 PILPNSAASSSPGNTLANPSSTQ 386
           P+LP+S + S PGN  A P   Q
Sbjct: 670 PLLPSSRSGSDPGNNTAGPHLRQ 692

>MTNK_BACSU (O31663) Methylthioribose kinase (EC 2.7.1.100) (MTR kinase)|
          Length = 397

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -2

Query: 241 YGTDTLEHFFDKVIREGMAGQELGEQTI 158
           Y TDTL H F++ I  G AG EL  +TI
Sbjct: 318 YLTDTLSHIFEEAI--GFAGCELIRRTI 343

>MOCC_RHIME (P49304) Rhizopine catabolism protein mocC|
          Length = 325

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 337 AEFGKIGRYYASESMLVLDPETGEYSDDKTPSYGTDT-LEHFFDKVIREGMAGQELG 170
           AE    GR       + ++P T  +++D  P  G DT LE    ++ + G AG ELG
Sbjct: 3   AEDPPFGRNSLMSIKIAINPIT--WTNDDVPELGGDTPLEQCLSEMRQAGYAGTELG 57

>CHST7_MOUSE (Q9EP78) Carbohydrate sulfotransferase 7 (EC 2.8.2.17) (EC 2.8.2.-)|
           (Chondroitin 6-sulfotransferase 2) (C6ST-2) (mC6ST-2)
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-4)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfot
          Length = 484

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 117 NMSKASLTSRKA*KMVCSPSSCPAIP 194
           N++ A L   +  K++CSP  CPA P
Sbjct: 184 NLTTAMLFRWRTNKVICSPPLCPAAP 209

>CHST7_RAT (Q6XQG8) Carbohydrate sulfotransferase 7 (EC 2.8.2.17) (EC 2.8.2.-)|
           (Chondroitin 6-sulfotransferase 2) (C6ST-2)
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-4)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfotransferase 5
          Length = 485

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 117 NMSKASLTSRKA*KMVCSPSSCPAIP 194
           N++ A L   +  K++CSP  CPA P
Sbjct: 185 NLTTAMLFRWRTNKVICSPPLCPAAP 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,384,923
Number of Sequences: 219361
Number of extensions: 1199592
Number of successful extensions: 4305
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4305
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)