ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet43e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AT8B3_HUMAN (O60423) Probable phospholipid-transporting ATPase I... 28 5.4
2Y341_CHLMU (Q9PKX0) Probable metal transport system membrane pro... 28 7.1
3INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase... 28 9.2

>AT8B3_HUMAN (O60423) Probable phospholipid-transporting ATPase IK (EC 3.6.3.1)|
            (ATPase class I type 8B member 3)
          Length = 1310

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 99   SLSCTCSINLDVILVVNYGTAM 34
            +LSC  SI ++VIL++ Y TA+
Sbjct: 1131 ALSCLLSITMEVILIIKYWTAL 1152



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>Y341_CHLMU (Q9PKX0) Probable metal transport system membrane protein TC0341|
          Length = 447

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 13  VICPFTHHSCPIIYNQNHIKIYGTCARKGF 102
           ++  +   SCP++YN+ +  +YG  A  G+
Sbjct: 115 ILVSYVKDSCPLLYNKINAYLYGQAATLGY 144



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>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)|
           (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase)
           (Phosphatidylinositol polyphosphate 5-phosphatase type
           IV)
          Length = 644

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 16  ICPFTHHSCPIIYNQNHIKIYG 81
           ICP ++ SCP I   +H  +YG
Sbjct: 568 ICPVSYSSCPGIKTSDHRPVYG 589


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,189,946
Number of Sequences: 219361
Number of extensions: 208579
Number of successful extensions: 544
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 80,573,946
effective HSP length: 18
effective length of database: 76,625,448
effective search space used: 1839010752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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