ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet43e02 |
|---|---|
| Clone Library Name | barley_pub |
>PK1L1_HUMAN (Q8TDX9) Polycystic kidney disease 1-like 1 protein (Polycystin-1L1)| Length = 2849 Score = 31.6 bits (70), Expect = 0.47 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Frame = +3 Query: 135 ICRSSIINFSKSMEGTHV*RTLDVEATHTSATGTRPSSRITPAAPRSGSPRPLP---QTG 305 I SS +N + GT D +AT T + R S +T P + +PR P TG Sbjct: 963 ISESSQLNLLPTEPGT-----ADPDATTTPFS--REPSPVTLGQPATSAPRGTPTEPMTG 1015 Query: 306 IFWKSDAGTSSVM 344 ++W AG S+V+ Sbjct: 1016 VYWIPPAGDSAVL 1028
>PKDRE_HUMAN (Q9NTG1) Polycystic kidney disease and receptor for egg| jelly-related protein precursor (PKD and REJ homolog) Length = 2253 Score = 31.6 bits (70), Expect = 0.47 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +3 Query: 237 RPSSRITPAAPRSGSPRPLPQTGIFWKSDA---GTSSVMMPAWNS 362 RP+S +PRS +P P PQ G +++ G + VM+ A NS Sbjct: 154 RPASPAARVSPRSAAPGPRPQQGFVARTECPTDGPARVMLQAVNS 198
>AZI1_HUMAN (Q9UPN4) 5-azacytidine-induced protein 1 (Pre-acrosome localization| protein 1) (Centrosomal protein of 131 kDa) (Cep131 protein) Length = 1083 Score = 30.8 bits (68), Expect = 0.81 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = +3 Query: 237 RPSSRITPAAPRSGSPRPLPQTGIFWKSDAGTSSVMMPAWNSIIPLSRCATMLVM 401 R +S + PRSGSPRP T + S PA S P + AT V+ Sbjct: 75 RSNSTTQVSQPRSGSPRPTEPTDFLMLFEGSPSGKKRPASLSTAPSEKGATWNVL 129
>VG65_ICHV1 (Q00106) Hypothetical gene 65 protein| Length = 1434 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -3 Query: 331 VPASLFQKIPVCGKGLGEPLRGAAGVIRELGL 236 +PA LF I + G G+G P R +G+ ++G+ Sbjct: 255 LPAGLFHDIVIVGLGIGLPPRAVSGLEEKMGI 286
>TRUB_CORGL (Q8NP46) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 297 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/53 (24%), Positives = 24/53 (45%) Frame = +2 Query: 158 LQQKHGRNSCLKNFGRRSHSHLGDGDQAKLPDHPGXXXXXXXXXXXXDGDLLE 316 + QK + S +K G+R+H + DG++ +P P DG+ + Sbjct: 116 IMQKPTKVSAIKIDGKRAHERVRDGEEVDIPARPVTVSVFDVLDYHVDGEFYD 168
>IP23_LYCES (Q43502) Proteinase inhibitor type-2 CEVI57 precursor (Proteinase| inhibitor type II CEVI57) Length = 201 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 34 CNYPHYIAPTFISHGFFSPFLPRMVQIFCQPYIIY 138 CNY +Y TFI G P P + +C P I Y Sbjct: 64 CNY-YYANGTFICEGTSDPKNPNICPSYCDPQIAY 97
>HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthodenticle)| Length = 671 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 219 TSATGTRPSSRITPAAPRSGSPRPLP 296 +S++ T PS ITP +P+S RP+P Sbjct: 435 SSSSITTPSPPITPMSPQSAPQRPMP 460
>IF4G_SCHPO (Q10475) Eukaryotic translation initiation factor 4 gamma| (eIF-4-gamma) (eIF-4G) Length = 1403 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = +3 Query: 207 EATHTSATGTRP--SSRITPAAPRSGSPRPLPQTGIFWKSDAGTSSVMMPAWNS 362 EA+ T+ G RP S+ T +P +G+P P T I +D T + + A NS Sbjct: 222 EASSTATKGPRPTTSASNTNTSPANGAPTNKPSTDIN-TTDPATQTTQVSASNS 274
>P85A_MOUSE (P26450) Phosphatidylinositol 3-kinase regulatory alpha subunit| (PI3-kinase p85-alpha subunit) (PtdIns-3-kinase p85-alpha) (PI3K) Length = 724 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +3 Query: 201 DVEATHTSATGTRPSSRITPAAPRSGSPRPLPQTGIFWKSDAGTSSVMMP 350 D T+ G + RI+P P+ PRPLP K++A T +P Sbjct: 68 DFPGTYVEYIGRK---RISPPTPKPRPPRPLPVAPGSSKTEADTEQQALP 114
>PACC_MAGGR (Q52B93) pH-response transcription factor pacC/RIM101| Length = 559 Score = 28.1 bits (61), Expect = 5.2 Identities = 23/88 (26%), Positives = 34/88 (38%) Frame = +3 Query: 96 TKNGANILPTIYHICRSSIINFSKSMEGTHV*RTLDVEATHTSATGTRPSSRITPAAPRS 275 TKN + I +S++ S S G H + H S G RP P + Sbjct: 321 TKNDLEQIDQILEHMQSTVYENSGSSPGAHYGSGSGYDMRHQSPVGIRP-----PMSDHY 375 Query: 276 GSPRPLPQTGIFWKSDAGTSSVMMPAWN 359 G + P T + S G+ +V P+ N Sbjct: 376 GQQQHSPMTAVS-SSHGGSPAVTPPSSN 402
>VL2_HPV39 (P24839) Minor capsid protein L2| Length = 470 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Frame = +3 Query: 144 SSIINFSKSMEGTHV*RTLDVEATHTSATGTRP-SSRITPAAPRSGSPR 287 S I S GTH + +E T TGT P SS TP R PR Sbjct: 177 SGNIFVSTPTSGTHGYEEIPMEVFATHGTGTEPISSTPTPGISRVAGPR 225
>DLG4_RAT (P31016) Discs large homolog 4 (Postsynaptic density protein 95)| (PSD-95) (Synapse-associated protein 90) (SAP90) Length = 724 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 198 LDVEATHTSATGTRPSSRITPAAPRSGSP 284 LD E +H+S GT + +TP +PR SP Sbjct: 268 LDNEISHSSYLGTDYPTAMTPTSPRRYSP 296
>DLG4_MOUSE (Q62108) Discs large homolog 4 (Postsynaptic density protein 95)| (PSD-95) (Synapse-associated protein 90) (SAP90) Length = 724 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 198 LDVEATHTSATGTRPSSRITPAAPRSGSP 284 LD E +H+S GT + +TP +PR SP Sbjct: 268 LDNEISHSSYLGTDYPTAMTPTSPRRYSP 296
>DLG4_HUMAN (P78352) Discs large homolog 4 (Postsynaptic density protein 95)| (PSD-95) (Synapse-associated protein 90) (SAP90) Length = 724 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 198 LDVEATHTSATGTRPSSRITPAAPRSGSP 284 LD E +H+S GT + +TP +PR SP Sbjct: 268 LDNEISHSSYLGTDYPTAMTPTSPRRYSP 296
>SYFA_PYRHO (O58391) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 499 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -3 Query: 382 HLERGMIEFH-AGIITEDVPASLFQKIPVCGKGLG 281 H E G +EF AGI E++ +L K+PV G+G Sbjct: 433 HPELGWVEFGGAGIFREEMTEALGIKVPVIAWGIG 467
>TRUB_COREF (Q8FPB3) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA| pseudouridine 55 synthase) (Psi55 synthase) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) Length = 297 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = +2 Query: 155 KLQQKHGRNSCLKNFGRRSHSHLGDGDQAKLPDHPGXXXXXXXXXXXXDGDLLEERR 325 ++ QK S +K G+R+H + DG+ +P P D+LE+RR Sbjct: 115 EIMQKPASVSAIKIDGKRAHERVRDGEVVDIPARPVTVSVF---------DVLEQRR 162
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/53 (30%), Positives = 22/53 (41%) Frame = +3 Query: 234 TRPSSRITPAAPRSGSPRPLPQTGIFWKSDAGTSSVMMPAWNSIIPLSRCATM 392 +RP S + P A G+PRP P F P NS+ P+ C + Sbjct: 1885 SRPPSPVDPYAKMVGTPRPPPGGHSF------------PRRNSVTPVENCVPL 1925
>CTND2_HUMAN (Q9UQB3) Catenin delta-2 (Delta-catenin) (Neural| plakophilin-related ARM-repeat protein) (NPRAP) (Neurojungin) (GT24) Length = 1225 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 243 SSRITPAAPRSGSPRPLPQTGIFWKSDAGTSS 338 SS PA PR GSP PQ G K G S+ Sbjct: 255 SSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSA 286
>FAS2_PENPA (P15368) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1857 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%) Frame = +3 Query: 201 DVEATHTSATGTRPSSRITP----AAPRSGSPRPLPQTG 305 DV+ T P+ TP AAP +G+P P P G Sbjct: 91 DVDPVEEEPEATEPAPSATPAAPAAAPAAGAPPPPPSAG 129
>SYFA_PYRAB (Q9UYX3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 500 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = -3 Query: 382 HLERGMIEFH-AGIITEDVPASLFQKIPVCGKGLG 281 H E G +EF AG+ E++ +L K+PV G+G Sbjct: 434 HPELGWVEFGGAGVFREEMTEALGIKVPVIAWGIG 468 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,183,647 Number of Sequences: 219361 Number of extensions: 1050382 Number of successful extensions: 3689 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3477 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3686 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
