ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet43d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE015927.1| Clostridium tetani E88, complete genome 40 0.17
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 36 2.7
3dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic D... 36 2.7
4dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic D... 36 2.7

>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 0.17
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 6       tataacaggttttaccattgtatg 29
               ||||||||| ||||||||||||||
Sbjct: 2368752 tataacaggctttaccattgtatg 2368729



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 8       taacaggttttaccattgtatg 29
               |||||| |||||||||||||||
Sbjct: 5616429 taacagattttaccattgtatg 5616408



to top

>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664C05
          Length = 165354

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 8      taacaggttttaccattgtatg 29
              |||||| |||||||||||||||
Sbjct: 163337 taacagattttaccattgtatg 163316



to top

>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0021C04
          Length = 162115

 Score = 36.2 bits (18), Expect = 2.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 8    taacaggttttaccattgtatg 29
            |||||| |||||||||||||||
Sbjct: 8576 taacagattttaccattgtatg 8555


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 203,874
Number of Sequences: 3902068
Number of extensions: 203874
Number of successful extensions: 54273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54239
Number of HSP's gapped (non-prelim): 34
length of query: 32
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 12
effective length of database: 17,155,003,908
effective search space: 205860046896
effective search space used: 205860046896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
to top