ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet43d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN445_HUMAN (P59923) Zinc finger protein 445 30 1.1
2CXX1_HUMAN (O15255) CAAX box protein 1 (Cerebral protein 5) 28 5.3
3AOAH_RABIT (O18823) Acyloxyacyl hydrolase precursor (EC 3.1.1.77... 28 6.9
4Y900_TREPA (O83870) Hypothetical protein TP0900 27 9.0

>ZN445_HUMAN (P59923) Zinc finger protein 445|
          Length = 1031

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
 Frame = +2

Query: 62  NYSHPTGKEIQKKYSRSI*SPHRTCDVLHCGGEKRIM*SSCGVMQQQQRRRNDHQTYA-- 235
           N+SH TGK+ +   S S+   H T   L   G K  +   CG   +      D++ Y   
Sbjct: 379 NFSHRTGKDSEVSGSNSLDLKHVT--YLRVSGRKESLKHGCGKHFRMSSHHYDYKKYGKG 436

Query: 236 ----LGGYLATQSTH 268
               +GG+   Q  H
Sbjct: 437 LRHMIGGFSLHQRIH 451



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>CXX1_HUMAN (O15255) CAAX box protein 1 (Cerebral protein 5)|
          Length = 209

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +3

Query: 168 SCNLRVELCSSSSGGVMIIRRTPWAGTWRRSPPTGCRPPSSPV 296
           SC+L    C  S          PWA  W   PP+    P+ P+
Sbjct: 54  SCSLPRSACLCSRNSAPGSCCRPWASLWSEPPPSPSSQPAPPM 96



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>AOAH_RABIT (O18823) Acyloxyacyl hydrolase precursor (EC 3.1.1.77) [Contains:|
           Acyloxyacyl hydrolase small subunit; Acyloxyacyl
           hydrolase large subunit]
          Length = 575

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -2

Query: 229 RLMIITPPLLL-LHNSTRRLHDS 164
           R+++++P LLL LH+ST R HD+
Sbjct: 6   RILVVSPLLLLPLHSSTSRAHDN 28



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>Y900_TREPA (O83870) Hypothetical protein TP0900|
          Length = 797

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 150 AVGRKESCNLRVELCSSSSGGVMI---IRRTPWAGTWRRSPPTGCRPPSSPV 296
           A GR   CNL +    +  G V +    R  P  G+W+R   + C PP   V
Sbjct: 91  AEGRALFCNL-IPPAYAQDGAVFVQWLARILPQLGSWQRRVESHCMPPKDAV 141


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,316,818
Number of Sequences: 219361
Number of extensions: 946356
Number of successful extensions: 2149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2148
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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