ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet43c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PER55_ARATH (Q96509) Peroxidase 55 precursor (EC 1.11.1.7) (Atpe... 32 0.29
2PER41_ARATH (O23609) Peroxidase 41 precursor (EC 1.11.1.7) (Atpe... 32 0.50
3PER39_ARATH (Q9SUT2) Peroxidase 39 precursor (EC 1.11.1.7) (Atpe... 32 0.50
4PER43_ARATH (Q9SZH2) Peroxidase 43 precursor (EC 1.11.1.7) (Atpe... 30 1.1
5PER65_ARATH (Q9FJR1) Peroxidase 65 precursor (EC 1.11.1.7) (Atpe... 30 1.5
6DRI_DROME (Q24573) Protein dead ringer (Protein retained) 28 4.2
7TILS_GLOVI (Q7NNL0) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 28 5.5
8FTSK_YERPE (Q8ZGC7) DNA translocase ftsK 28 7.2
9SSR4_RAT (P30937) Somatostatin receptor type 4 (SS4R) 28 7.2
10SSR4_MOUSE (P49660) Somatostatin receptor type 4 (SS4R) 28 7.2
11SLYX_PSEHT (Q3IJT8) Protein slyX homolog 28 7.2
12PER73_ARATH (Q43873) Peroxidase 73 precursor (EC 1.11.1.7) (Atpe... 27 9.4

>PER55_ARATH (Q96509) Peroxidase 55 precursor (EC 1.11.1.7) (Atperox P55)|
           (ATP20a)
          Length = 330

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -1

Query: 359 NSTETIAQVRENANRAGAWERKFERAMENMGKIGIKTKGDQQGAEIRKVCS 207
           N   + A V   AN A  +   F  AM N+G++G+K  G+Q   EIR+ CS
Sbjct: 280 NDLSSQATVVRFANNAEEFYSAFSSAMRNLGRVGVKV-GNQ--GEIRRDCS 327



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>PER41_ARATH (O23609) Peroxidase 41 precursor (EC 1.11.1.7) (Atperox P41)|
          Length = 326

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 323 ANRAGAWERKFERAMENMGKIGIKTKGDQQGAEIRKVC 210
           AN   A+   F RAME +G++G+  KG++ G E+R+ C
Sbjct: 284 ANNQTAFFEDFARAMEKLGRVGV--KGEKDG-EVRRRC 318



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>PER39_ARATH (Q9SUT2) Peroxidase 39 precursor (EC 1.11.1.7) (Atperox P39)|
           (ATP19a)
          Length = 326

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 296 KFERAMENMGKIGIKTKGDQQGAEIRKVCS 207
           +F  +ME MG+IG+KT  D    EIR+ C+
Sbjct: 297 EFSNSMEKMGRIGVKTGSD---GEIRRTCA 323



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>PER43_ARATH (Q9SZH2) Peroxidase 43 precursor (EC 1.11.1.7) (Atperox P43)|
          Length = 326

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -1

Query: 305 WERKFERAMENMGKIGIKT--KGDQQGAEIRKVCS 207
           +E  F +A+  MGKIG+KT  KG     EIR+VCS
Sbjct: 294 FESDFVKAIVKMGKIGVKTGFKG-----EIRRVCS 323



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>PER65_ARATH (Q9FJR1) Peroxidase 65 precursor (EC 1.11.1.7) (Atperox P65)|
           (ATP43)
          Length = 334

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 359 NSTETIAQVRENANRAGAWERKFERAMENMGKIGIKTKGDQQGAEIRKVC 210
           NST+    +   A    A+   F RAME +G +G+  KGD+ G E+R+ C
Sbjct: 282 NSTKPFVDLY--ATNETAFFEDFARAMEKLGTVGV--KGDKDG-EVRRRC 326



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>DRI_DROME (Q24573) Protein dead ringer (Protein retained)|
          Length = 911

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 48  PARGHTQSFSSMKKPTMAVARRSYISSSGDSAMHGASQP---NTPHHY 182
           P+ GH Q  +S  +P    A   + ++   S+MH  S+P   N  HH+
Sbjct: 662 PSMGHQQDAASEGEPEDDYAHGEHNTTGNSSSMHDDSEPQQMNGHHHH 709



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>TILS_GLOVI (Q7NNL0) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 325

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 116 LHLIVGRFGHAWSQPAKHPASLLADVSC*LWSIP 217
           LHL VG   H W   ++  A  +A V C +W +P
Sbjct: 56  LHLHVGHLDHRWRPGSERDAQRVA-VLCNVWGVP 88



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>FTSK_YERPE (Q8ZGC7) DNA translocase ftsK|
          Length = 1305

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = +3

Query: 78  SMKKPTMAVARRSYISSSGDSAMHGASQPNTPHHY*PTLVVDSGAYLPDLCALLVAFGLD 257
           S +   ++V    Y++   D+ + G S  +  +   P L   + A      A + AF   
Sbjct: 424 SAQSSHISVGNTPYMNPGLDAQIDGLSTTSLTNK--PVLASGTVAAATAAAAFMPAFTAT 481

Query: 258 PDFSHILHCSLELPLPRPGPVRV 326
            D S  +   +   LPRP PVR+
Sbjct: 482 SDSSSQIKQGIGPELPRPNPVRI 504



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>SSR4_RAT (P30937) Somatostatin receptor type 4 (SS4R)|
          Length = 384

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +1

Query: 235 CWSPLVLIPIFPIFSIALSNFLSHAPALFAFSLTCA 342
           CW P  ++ +  +F  +L   ++H   + +++ +CA
Sbjct: 267 CWMPFYVVQLLNLFVTSLDATVNHVSLILSYANSCA 302



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>SSR4_MOUSE (P49660) Somatostatin receptor type 4 (SS4R)|
          Length = 384

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +1

Query: 235 CWSPLVLIPIFPIFSIALSNFLSHAPALFAFSLTCA 342
           CW P  ++ +  +F  +L   ++H   + +++ +CA
Sbjct: 267 CWMPFYVVQLLNLFVTSLDATVNHVSLILSYANSCA 302



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>SLYX_PSEHT (Q3IJT8) Protein slyX homolog|
          Length = 71

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 60  HTQSFSSMKKPTMAVARRSYISSSGDSAMHGASQPNTPHH 179
           H Q  + MK+ T  +A +   S S  S M    +P  PH+
Sbjct: 32  HQQLLAKMKRQTELLAEKIKESQSSSSMMSNEPEPPPPHY 71



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>PER73_ARATH (Q43873) Peroxidase 73 precursor (EC 1.11.1.7) (Atperox P73)|
           (PRXR11) (ATP10a)
          Length = 329

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 335 VRENANRAGAWERKFERAMENMGKIGIKTKGDQQGAEIRKVC 210
           V + A  + A+ + F  AM  +G++G+KT+   +   IR+ C
Sbjct: 287 VNDWAKNSVAFNKAFVTAMTKLGRVGVKTR---RNGNIRRDC 325


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,168,286
Number of Sequences: 219361
Number of extensions: 937895
Number of successful extensions: 2166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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