ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet43c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 35 0.058
2GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX) ... 34 0.075
3EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 33 0.22
4FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 32 0.29
5LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III) 29 3.2
6TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP... 28 5.4
7TRPE_AERPE (Q9Y8T0) Anthranilate synthase component 1 (EC 4.1.3.... 28 5.4
8LGB1_PEA (P02233) Leghemoglobin-1 (Leghemoglobin I) 28 5.4
9LGB2_MEDTR (P27993) Leghemoglobin 2 28 5.4
10CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al... 28 7.0
11CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel ... 28 7.0
12CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel ... 28 7.0

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 34.7 bits (78), Expect = 0.058
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 369 SGASACGNPSSSLSWDGIHLTEAAYKKI 286
           S +  C N SS L WDG+H T+ AYK I
Sbjct: 493 STSKICPNTSSYLFWDGVHPTQRAYKTI 520



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>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)|
           (Endo-1,4-beta-glucanase) (Cellulase) (Fragment)
          Length = 224

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -1

Query: 342 SSSLSWDGIHLTEAAYKKIADGW 274
           ++ +SWDG+HL+E  Y KIA+ W
Sbjct: 111 NTDISWDGLHLSEIGYTKIANIW 133



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 357 ACGNPSSSLSWDGIHLTEAAYKKIADGWVNGPYCHPAI 244
           +C  PS  ++WDG H TEAA +   D    G +  P +
Sbjct: 336 SCACPSVRVNWDGAHYTEAANEYFFDQISTGAFSDPPV 373



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 354 CGNPSSSLSWDGIHLTEAAYKKIAD 280
           C  P  ++ WDG+H T+AA K I D
Sbjct: 335 CDEPDKAVVWDGVHFTQAANKFIFD 359



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>LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III)|
          Length = 146

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 253 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 146
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDSAGVQDSP 56



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>TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP-12)|
          Length = 534

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 268 RAVLPPGHSVLVLVLVLERAPASGCSSVSFLEAG 167
           +A LPPG SVL      E   AS  SS S+L +G
Sbjct: 374 QAQLPPGSSVLCFTENSEHPAASPMSSPSYLNSG 407



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>TRPE_AERPE (Q9Y8T0) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 438

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 147 GDPPLPSPASRKET 188
           GD PLP+PASRKE+
Sbjct: 145 GDTPLPAPASRKES 158



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>LGB1_PEA (P02233) Leghemoglobin-1 (Leghemoglobin I)|
          Length = 147

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 253 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 146
           PG+S+L   +VLE+APA+     SFL+   G   SP
Sbjct: 21  PGYSILFYTIVLEKAPAAK-GLFSFLKDTAGVEDSP 55



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>LGB2_MEDTR (P27993) Leghemoglobin 2|
          Length = 146

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 253 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 146
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDTAGVQDSP 56



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>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 132  VNKNNGDPPLPSPASRKETEEQPDAG 209
            VNKN    PLP     K+ EE+ D G
Sbjct: 1137 VNKNANPDPLPKKEEEKKEEEEADPG 1162



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>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 132  VNKNNGDPPLPSPASRKETEEQPDAG 209
            VNKN    PLP     K+ EE+ D G
Sbjct: 1089 VNKNANPDPLPKKEEEKKEEEEADPG 1114



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>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 132  VNKNNGDPPLPSPASRKETEEQPDAG 209
            VNKN    PLP     K+ EE+ D G
Sbjct: 1186 VNKNANPDPLPKKEEEKKEEEEDDRG 1211


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,241,013
Number of Sequences: 219361
Number of extensions: 818513
Number of successful extensions: 2469
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2468
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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