ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet43b01 |
|---|---|
| Clone Library Name | barley_pub |
>PLSX_THET2 (Q72HV0) Fatty acid/phospholipid synthesis protein plsX| Length = 326 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = -1 Query: 360 EGEGQGGIALKDTSPIFDTMEFGRRYGN*EGRDQTTTLSTMIVLTFFVG 214 E EG+G +++ P+ R YGN EGRD + ++V F G Sbjct: 175 EEEGKGNALVQEAYPLLRAALGERFYGNVEGRDIFLGTTEVVVTDGFTG 223
>OAT4_HUMAN (Q9NSA0) Solute carrier family 22 member 11 (Organic anion| transporter 4) Length = 550 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Frame = -1 Query: 201 SIAGESCFFTPSLVYYKA*RFVNLYGFFSVY*RFGLCCVNW------IVSLVRISCTLPS 40 ++AG S F P+ V Y RFV +G ++ V W V++ + C + Sbjct: 181 AVAGTSTIFAPTFVIYCGLRFVAAFGMAGIFLSSLTLMVEWTTTSRRAVTMTVVGCAFSA 240 Query: 39 G 37 G Sbjct: 241 G 241
>RM10_YEAST (P36520) 60S ribosomal protein L10, mitochondrial precursor| (YmL10/YmL18) Length = 322 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -1 Query: 258 TTTLSTMIVLTFFVGLFLTSIAGESCF----FTPSLVYYKA*RFVNLYG 124 TT + ++ TF + LTS+AG F F ++ +++ R+V++ G Sbjct: 14 TTVIGRKLINTFVPSMMLTSVAGNDIFFRGLFKSPVLAFQSYRYVSILG 62
>PLSX_DESVH (Q72CS5) Fatty acid/phospholipid synthesis protein plsX| Length = 345 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = -1 Query: 360 EGEGQGGIALKDTSPIFDTMEFGRRYGN*EGRDQTTTLSTMIVLTFFVG 214 E EG+G +K+ +F + GN EGRD T ++V FVG Sbjct: 184 EEEGKGNTLVKEAYELFKLAQNINFVGNVEGRDLFTGEVDVVVCDGFVG 232
>FREM1_HUMAN (Q5H8C1) FRAS1-related extracellular matrix protein 1 precursor| (QBRICK protein) Length = 2179 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -3 Query: 289 EIRKLGGPGSDDYPKYHD-RPDLFCGLVFDKHSRGEL 182 EI K GPG YP + + DLF G+++ +H GE+ Sbjct: 569 EIMKKPGPGLIGYPVHGFLQRDLFNGIIYYRHFGGEI 605
>TRI5_GIBZE (Q00909) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSPS (Q8NID7) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSMI (Q8NJA1) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSME (Q8NIC8) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSCU (Q8NIG9) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSCO (Q7LJF8) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSCE (Q8NIC1) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSBO (Q8NIH3) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSAU (Q8NIH0) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSAS (Q8NIH6) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>TRI5_FUSAC (Q7LJR6) Trichodiene synthase (EC 4.2.3.6) (Sesquiterpene cyclase)| (TS) Length = 375 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = -3 Query: 301 GVWQEIRKLGG-PGSDDYPKY 242 G W E GG PGSDDYP++ Sbjct: 160 GCWIEQYNFGGFPGSDDYPQF 180
>GR58B_DROME (Q9W2B1) Putative gustatory receptor 58b| Length = 408 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -1 Query: 225 FFVGLFLTSIAGESCFFTPSLVYYKA*RFVNLYGFFSVY-*RFG 97 FFV LFL +IA SC+ T ++ K + + LY + +Y RFG Sbjct: 83 FFVMLFLRAIAVVSCYGT---LWLKRHKIIQLYKYSLIYWKRFG 123
>S6A12_HUMAN (P48065) Sodium- and chloride-dependent betaine transporter| (Na+/Cl-betaine/GABA transporter) (BGT-1) Length = 614 Score = 27.7 bits (60), Expect = 7.2 Identities = 21/75 (28%), Positives = 34/75 (45%) Frame = -1 Query: 243 TMIVLTFFVGLFLTSIAGESCFFTPSLVYYKA*RFVNLYGFFSVY*RFGLCCVNWIVSLV 64 T+ V+ + +GLFL + G F L Y A + L F S+ F + C++W+ Sbjct: 427 TIAVMCYLIGLFLVTEGGMYIF---QLFDYYASSGICLL-FLSL---FEVVCISWVYGAD 479 Query: 63 RISCTLPSGVLCRPW 19 R + + RPW Sbjct: 480 RFYDNIEDMIGYRPW 494
>ROAA_ASTLO (P58145) Ribosomal operon-associated A protein (RoaA)| Length = 519 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = -1 Query: 231 LTFFVGLF----LTSIAGESCFFTPSLVYYKA*RFVNLYGFFSVY*RFGLCCVNWIVSLV 64 + FF+ F L S CF +Y + + N+Y FF Y F + C+N+++ + Sbjct: 217 ILFFIFNFMFNGLKSFIQRKCFMNNEFIYVSSLK--NIYFFFKSYNEFNI-CINYLIYFL 273 Query: 63 R 61 + Sbjct: 274 K 274
>MSA1_SARMU (Q01416) Merozoite 31 kDa surface antigen precursor| Length = 280 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +1 Query: 136 DETSSFIIHQTGREKAALPCYACQKQAHKKGQDD 237 D+ S F++ T CY C+ KKG +D Sbjct: 212 DKNSYFVLTATKTPSKTTHCYLCEPDPTKKGHND 245
>PAQR4_MOUSE (Q9JJE4) Progestin and adipoQ receptor family member 4 (Progestin| and adipoQ receptor family member IV) Length = 273 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 99 GLCCVNWIVSLVRISCTLPSGVLCRPW 19 G+C VN + +L I CTL CRPW Sbjct: 122 GVCLVNTLGALPIIHCTL----ACRPW 144
>PAQR4_HUMAN (Q8N4S7) Progestin and adipoQ receptor family member 4 (Progestin| and adipoQ receptor family member IV) Length = 273 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 99 GLCCVNWIVSLVRISCTLPSGVLCRPW 19 G+C VN + +L I CTL CRPW Sbjct: 122 GVCLVNTLGALPIIHCTL----ACRPW 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,059,379 Number of Sequences: 219361 Number of extensions: 1052250 Number of successful extensions: 1926 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1912 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1925 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
