ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet42g08 |
|---|---|
| Clone Library Name | barley_pub |
>PEP_DROME (P41073) Zinc finger protein on ecdysone puffs| Length = 716 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +2 Query: 182 HSNSAHHCLPAEEGGAKHGQRRRRELPGGEAGEDDRDER 298 H SA H A E K G+R+R+ LP E+ RD R Sbjct: 337 HLLSAEHLKKAAENNTKVGERKRQTLPISTEEEETRDLR 375
>IF2_CORDI (Q6NGN2) Translation initiation factor IF-2| Length = 953 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Frame = +3 Query: 147 PGFEGIGIDRENTQTQRITACRPKKAAQSTASAVAGSF--PAARPARMTGTNAAR 305 PGF + + PK AAQS+ +A GS P A+PA G A R Sbjct: 120 PGFSAAKAESSAPKPAAPKPAAPKPAAQSSTTATPGSMPRPQAKPAPKPGGRAPR 174
>COBB_LISMO (Q8Y7T0) Cobyrinic acid A,C-diamide synthase| Length = 452 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 8/44 (18%) Frame = +3 Query: 153 FEGIGIDRENTQTQRITACRPK--------KAAQSTASAVAGSF 260 F+G+GIDR+N+ T I C KA ++A+A+ F Sbjct: 93 FDGLGIDRDNSSTSFIAKCTKTPVILVVDGKAISTSAAAIVDGF 136
>COBB_LISMF (Q720N8) Cobyrinic acid A,C-diamide synthase| Length = 452 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 8/44 (18%) Frame = +3 Query: 153 FEGIGIDRENTQTQRITACRPK--------KAAQSTASAVAGSF 260 F+G+GIDR+N+ T I C KA ++A+A+ F Sbjct: 93 FDGLGIDRDNSSTSFIAKCTKTPVILVVDGKAISTSAAAIVDGF 136
>CMGA_HORSE (Q9XS63) Chromogranin A precursor (CgA) [Contains: Pancreastatin;| WE-14] Length = 448 Score = 29.6 bits (65), Expect = 1.8 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +2 Query: 125 THSLTHLPRFRG-DWD*SGKHSNSAHHCLPAEEG-GAKHGQRRRRELPGGEAGE--DDRD 292 THS T LP + D G + + + E+G GA+ GQ+ +RE EAGE D + Sbjct: 177 THSPTRLPSQKHPDPQAEGDSDSPSQGLVDREKGLGAERGQQAKREEEEDEAGEKADAEE 236 Query: 293 ERRQGEFESVPS 328 E F PS Sbjct: 237 EGPTAAFNPHPS 248
>SH2P1_HUMAN (Q6PD62) SH2 domain-binding protein 1| Length = 1173 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 215 EEGGAKHGQRRRRELPGGEAGEDDRDERRQG 307 EEGG + ++RRR P GE G DD DE G Sbjct: 950 EEGGERKKKKRRRH-PKGEEGSDD-DETENG 978
>APBB1_MOUSE (Q9QXJ1) Amyloid beta A4 precursor protein-binding family B member| 1 (Fe65 protein) Length = 710 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 230 KHGQRRRRELPGGEAGEDDRDERRQGEFESVPSP 331 + G E GEA EDD DE + E E + SP Sbjct: 143 EQGPDEGEEKAAGEAEEDDEDEEEEEEEEDLSSP 176
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +3 Query: 165 GIDRENTQTQRITACRPKKAAQSTASAVAGSFPAARPARMTGTNAARGNL 314 G+ + +TQ + A K A A A+ +FP P M + ARGN+ Sbjct: 758 GLITKEERTQELIAIWTK-ATNEVAEAMNDNFPKTNPVSMMVNSGARGNM 806
>H13_MOUSE (P43277) Histone H1.3 (H1 VAR.4) (H1d)| Length = 220 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = +3 Query: 165 GIDRENTQTQRITACRPKKAAQSTASAVAGSFPAARP 275 G + + +++ A +PKKAA+S A A A A++P Sbjct: 166 GAKKVSKSPKKVKAAKPKKAAKSPAKAKAPKAKASKP 202
>Y206_ENCCU (Q8SWH6) Hypothetical protein ECU02_0060| Length = 602 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = +2 Query: 215 EEGGAKHGQRRRRELPGGEAGEDDRDERRQGEFE 316 E+G G+++R + GEA E+ ++E R GE E Sbjct: 342 EKGSKGKGRKKRGKKGAGEAKEESKEEDRGGEEE 375
>SSG2_PEA (Q43093) Granule-bound starch synthase 2, chloroplast precursor (EC| 2.4.1.21) (Granule-bound starch synthase II) (GBSS-II) Length = 752 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = +3 Query: 120 KELTHSLIS---PGFEGIGIDRENTQTQRITACRPKKAAQSTASAV 248 K+L S+ S PG EG G+ E+++ P+K + S+ SAV Sbjct: 102 KKLVSSIDSDSIPGLEGNGVSYESSEKSLSRDSNPQKGSSSSGSAV 147
>SH2P1_XENTR (Q6DEU9) SH2 domain-binding protein 1| Length = 1172 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = +2 Query: 215 EEGGAKHGQRRRRELPGGEAGEDDRDE-----RRQGEFESVPSPF 334 E G K +RR+R GG+ +DD D+ +RQ + P+ F Sbjct: 961 EGGEKKKKKRRKRPQKGGDGSDDDEDQAPQPKKRQPKKREKPAKF 1005
>NCKX1_BOVIN (Q28139) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) Length = 1216 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +2 Query: 206 LPAEEGGAKHGQRRRRELPGGEAGEDDRDERRQGEFES 319 + A EGG G E+ GEAGE + DE +GE ++ Sbjct: 869 IQAGEGGEVEGDEDEGEIQAGEAGEVEGDE-DEGEIQA 905 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +2 Query: 206 LPAEEGGAKHGQRRRRELPGGEAGEDDRDERRQGEFES 319 + A EGG G E+ GEAGE + DE +GE ++ Sbjct: 835 IQAGEGGEVEGDEDEGEIQAGEAGEVEGDE-DEGEIQA 871
>NFL_PIG (P02547) Neurofilament triplet L protein (68 kDa neurofilament| protein) (Neurofilament light polypeptide) (NF-L) Length = 548 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/55 (30%), Positives = 24/55 (43%) Frame = +2 Query: 146 PRFRGDWD*SGKHSNSAHHCLPAEEGGAKHGQRRRRELPGGEAGEDDRDERRQGE 310 P G+ + GK A AEE GA+ + + EA E++ E QGE Sbjct: 469 PPSEGEAEEEGKEKEEAEAEAEAEEEGAQEEEEAAEKEESEEAKEEEGGEGEQGE 523
>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2505 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 8/61 (13%) Frame = +2 Query: 176 GKHSNSAHHCLPAEEGGAKHGQRRRRELPG--------GEAGEDDRDERRQGEFESVPSP 331 G+H H P EEG +RR R G GE D ERR+ P+ Sbjct: 954 GEHRRHRAHRRPGEEGPEDKAERRARHREGSRPARGGEGEGEGPDGGERRRRHRHGAPAT 1013 Query: 332 F 334 + Sbjct: 1014 Y 1014
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 165 GIDRENTQTQRITACRPKKAAQSTASAVAGSFPAARPARMTGTNAARGNL 314 G+ ++ +TQ + A K A A A+ +FP P M + ARGN+ Sbjct: 758 GLITKDERTQELIAIWTK-ATNEVAEAMNANFPKTNPIFMMVDSGARGNM 806
>APHA_SALTI (O08430) Class B acid phosphatase precursor (EC 3.1.3.2)| Length = 237 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 358 EMKTETETERRGDRFKFPLAAFVPVILAGLAAGK 257 + KTET ++ D F P A PVI AG G+ Sbjct: 141 QTKTETVSKTLADNFHIPAANMNPVIFAGDKPGQ 174
>PEX3_RAT (Q9JJK4) Peroxisomal biogenesis factor 3 (Peroxin-3) (Peroxisomal| assembly protein PEX3) Length = 372 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 230 KHGQRRRRELPGGEAGEDDRDERRQGEFES 319 K+GQ++ RE+ EA E RRQ FES Sbjct: 31 KYGQKKLREIQEREAAEYIAQARRQYHFES 60
>ATPI_CYACA (Q9TM31) Chloroplast ATP synthase a chain precursor (EC 3.6.3.14)| (ATPase subunit IV) Length = 239 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -3 Query: 310 FPLAAFVPVILAGLAAGKLPATALAVLCAAFFG 212 FPL +PV++ GL A + A A L A++ G Sbjct: 200 FPLFLPLPVMVLGLFASSIQALIFATLSASYIG 232
>COBB_LISIN (Q92CL7) Cobyrinic acid A,C-diamide synthase| Length = 452 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 8/44 (18%) Frame = +3 Query: 153 FEGIGIDRENTQTQRITACRPK--------KAAQSTASAVAGSF 260 F+G+G DR+N T I C KA ++A+A+ F Sbjct: 93 FDGLGTDRDNASTSFIAKCTKTPVILVVDGKAISTSAAAIVDGF 136
>LIFO_PSEME (Q8RKT5) Lipase chaperone (Lipase foldase) (Lipase helper protein)| (Lipase activator protein) (Lipase modulator) Length = 335 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +3 Query: 225 AQSTASAVAGSFPAARPARMTGTNAA 302 A++ AS+ A + AARPA+ T T AA Sbjct: 31 AEAPASSPAANLTAARPAQRTATGAA 56
>APHA_SALTY (P58683) Class B acid phosphatase precursor (EC 3.1.3.2)| Length = 237 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 358 EMKTETETERRGDRFKFPLAAFVPVILAG 272 + KTET ++ D F P A PVI AG Sbjct: 141 QTKTETVSKTLADNFHIPAANMNPVIFAG 169
>PEX3_MOUSE (Q9QXY9) Peroxisomal biogenesis factor 3 (Peroxin-3) (Peroxisomal| assembly protein PEX3) Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 230 KHGQRRRRELPGGEAGEDDRDERRQGEFES 319 K+GQ++ RE+ EA E RRQ FES Sbjct: 31 KYGQKKIREIQEREAAEYIAQARRQYHFES 60
>PEX3_MACFA (Q60HE1) Peroxisomal biogenesis factor 3 (Peroxin-3) (Peroxisomal| assembly protein PEX3) Length = 373 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 230 KHGQRRRRELPGGEAGEDDRDERRQGEFES 319 K+GQ++ RE+ EA E RRQ FES Sbjct: 31 KYGQKKIREIQEREAAEYIAQARRQYHFES 60
>PEX3_HUMAN (P56589) Peroxisomal biogenesis factor 3 (Peroxin-3) (Peroxisomal| assembly protein PEX3) Length = 373 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 230 KHGQRRRRELPGGEAGEDDRDERRQGEFES 319 K+GQ++ RE+ EA E RRQ FES Sbjct: 31 KYGQKKIREIQEREAAEYIAQARRQYHFES 60
>PEX3_CRILO (Q9JJK3) Peroxisomal biogenesis factor 3 (Peroxin-3) (Peroxisomal| assembly protein PEX3) Length = 373 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 230 KHGQRRRRELPGGEAGEDDRDERRQGEFES 319 K+GQ++ RE+ EA E RRQ FES Sbjct: 31 KYGQKKIREIQEREAAEYIAQARRQYHFES 60 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,791,250 Number of Sequences: 219361 Number of extensions: 668514 Number of successful extensions: 2434 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2356 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2431 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
