ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet42e07 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 123 bits (309), Expect = 9e-29 Identities = 67/100 (67%), Positives = 69/100 (69%), Gaps = 26/100 (26%) Frame = -3 Query: 407 SVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDA-------- 252 SVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD A Sbjct: 491 SVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLIS 550 Query: 251 ------------------PTVDISVTADADFVRPELRQSA 186 PTVDISV ADADFVRPELRQS+ Sbjct: 551 NFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSS 590
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 120 bits (300), Expect = 1e-27 Identities = 64/99 (64%), Positives = 69/99 (69%), Gaps = 26/99 (26%) Frame = -3 Query: 407 SVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDA-------- 252 +VDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYIL+QQA V VD A Sbjct: 497 AVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLIS 556 Query: 251 ------------------PTVDISVTADADFVRPELRQS 189 P+VDISVTADADFVRPELRQ+ Sbjct: 557 NFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQA 595
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 117 bits (293), Expect = 7e-27 Identities = 64/98 (65%), Positives = 66/98 (67%), Gaps = 26/98 (26%) Frame = -3 Query: 407 SVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDA-------- 252 SVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD A Sbjct: 481 SVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLIS 540 Query: 251 ------------------PTVDISVTADADFVRPELRQ 192 PT+DISV A ADFVRPELRQ Sbjct: 541 NFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQ 578
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 39.3 bits (90), Expect = 0.002 Identities = 17/36 (47%), Positives = 23/36 (63%) Frame = -3 Query: 407 SVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRF 300 + SL P + A G+ +M D CSTTAR G+ W P+F Sbjct: 302 ATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF 337
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 35.4 bits (80), Expect = 0.033 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -3 Query: 407 SVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRF 300 + SL P + G+ +M CSTTAR G+ W PRF Sbjct: 303 ATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRF 338
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 35.0 bits (79), Expect = 0.042 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -3 Query: 407 SVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRF 300 + SL P + G+ +M D CSTTAR G+ W P F Sbjct: 296 ATQSLYPLIGKYGMDYMYDACSTTARRGALDWYPIF 331
>SPTA3_HUMAN (Q8NHX4) Spermatogenesis-associated protein 3 (Testis spermatocyte| apoptosis-related protein 1) (Testis and spermatogenesis cell-related protein 1) Length = 183 Score = 33.5 bits (75), Expect = 0.12 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = +2 Query: 62 PQQGALST*HSSSQVQTASRTHTLQSMNCPPIKKQ---LFRPESRQTAGAPDARSQHRPS 232 PQQ + + S ++T SR Q++ P I++ L P++ A AP +R + Sbjct: 37 PQQPSPESTPQHSSLETTSRQPAFQALPAPEIRRSSCCLLSPDANVKA-APQSR---KAG 92 Query: 233 PRCRRWAHPCPPSQTPAGSGCSR 301 P R H C + P S C R Sbjct: 93 PLIRAGPHSCSCATCPCSSACWR 115
>VEGFB_BOVIN (Q9XS49) Vascular endothelial growth factor B precursor (VEGF-B)| (VEGF-related factor) (VRF) Length = 207 Score = 30.4 bits (67), Expect = 1.0 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +2 Query: 173 RPESRQTAGAPDARS--QHRPSPRCRRWAHPCPPSQTPA 283 RP+ R++A PD S HRP PR P P + +PA Sbjct: 125 RPKKRESAVKPDRASTPHHRPQPRSVPGWDPAPGAPSPA 163
>GDF15_RAT (Q9Z0J6) Growth/differentiation factor 15 precursor (GDF-15)| Length = 303 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/74 (27%), Positives = 38/74 (51%) Frame = +3 Query: 84 PDTAAHRFKQLVARIHYSP*IVHPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGRILV 263 PD RF+ L++R+H + ++++S+P + + EV +G H GR+L+ Sbjct: 54 PDELRGRFQDLLSRLHAN----QSREDSNSEPTPDPAVRILSPEVRLGSH-----GRLLL 104 Query: 264 HRHKRLLGQDVVEA 305 ++ L Q + EA Sbjct: 105 RVNRASLTQGLPEA 118
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)| Length = 2441 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/75 (29%), Positives = 32/75 (42%) Frame = +2 Query: 56 IQPQQGALST*HSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARSQHRPSP 235 + PQQ LS +S + +L + P Q RP+S+ +P R Q +PSP Sbjct: 2313 MSPQQHMLSGQPQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSP 2372 Query: 236 RCRRWAHPCPPSQTP 280 H P + TP Sbjct: 2373 H-----HVSPQTGTP 2382
>MYST3_HUMAN (Q92794) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)| (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein 3) (Runt-related transcription factor-binding protein 2) (Monocytic leukemia zinc finger protein) (Zinc finger protei Length = 2004 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Frame = +2 Query: 53 SIQPQQGALST*HSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDA-----RS 217 S+QP A + S Q R + Q PP Q +P Q AP + Sbjct: 1623 SVQP---AANCSIKSPQSCVVERPPSNQQQQPPPPPPQQPQPPPPQPQPAPQPPPPQQQP 1679 Query: 218 QHRPSPRCRRWAHPCPPSQTPAGSGCS 298 Q +P P+ ++ P PP Q P S CS Sbjct: 1680 QQQPQPQPQQPPPPPPPQQQPPLSQCS 1706
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 29.6 bits (65), Expect = 1.8 Identities = 21/64 (32%), Positives = 31/64 (48%) Frame = +2 Query: 95 SSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARSQHRPSPRCRRWAHPCPPSQ 274 +S + ASRT T S PP + L +S Q A + A P+P C+ + P+Q Sbjct: 3302 ASSISLASRTKT--SAQVPPEGEPLQSTQSAQPAPSTQATQPIPPAPPCQP-SQLSQPAQ 3358 Query: 275 TPAG 286 P+G Sbjct: 3359 PPSG 3362
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 28.9 bits (63), Expect = 3.0 Identities = 21/88 (23%), Positives = 38/88 (43%) Frame = +1 Query: 16 NFYYSRRNGDDSLDPTPTGGSLYLTQQLTGSNS*SHAYITVHELSTHQKTTLQTRI*ADC 195 N Y + S++P P L+ QQ+T + S + A S+ +Q + Sbjct: 472 NLYQHSTSAGSSVNPPPPPPPLF-QQQMTTTTSSAAASFVEQPWSSSSSRAIQPATTSAS 530 Query: 196 RSSGRTKSASAVTEMSTVGASLSTVTNA 279 SS + S+ A +S +G++ S +A Sbjct: 531 SSSSSSASSPAAAVVSAIGSASSPAASA 558
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/75 (28%), Positives = 32/75 (42%) Frame = +2 Query: 56 IQPQQGALST*HSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARSQHRPSP 235 + PQQ LS +S + +L + P Q RP+S+ +P R Q +PSP Sbjct: 2314 MSPQQHMLSGQPQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSP 2373 Query: 236 RCRRWAHPCPPSQTP 280 H P + +P Sbjct: 2374 H-----HVSPQTGSP 2383
>DUSC_AZOVI (P96192) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 309 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +2 Query: 173 RPE-SRQTA-GAPDARSQHRPSPRCRRWAHPCPPSQTPAGSGCSR 301 RP+ +RQ A APDARS R R RW C S GSG R Sbjct: 226 RPDLARQIAMRAPDARSSRRAGVRYSRW---CASSGGAPGSGSRR 267
>UBP2_HUMAN (O75604) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific protease) Length = 605 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = +1 Query: 106 SNS*SHAYITVHELSTHQKTTLQTRI*ADCRSSG----RTKSASAVTEMST 246 S + +HA ++ +S H TT+ A CRS G T + S+VT MS+ Sbjct: 533 SENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSS 583
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 14/74 (18%) Frame = +2 Query: 110 TASRTHTLQSMNCPPIKKQL----------FRPESRQTAGAPDARS----QHRPSPRCRR 247 TA+ T +++ PP ++Q P+ + T A A S Q +P P R Sbjct: 526 TAAAAPTTTTLSPPPTQQQPPQSAAPAPSPLLPQQQPTPSAAPAPSPLLPQQQPPPSAAR 585 Query: 248 WAHPCPPSQTPAGS 289 P PP Q P S Sbjct: 586 APSPLPPQQQPLPS 599
>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1302 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Frame = +2 Query: 95 SSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARSQHR-PSPRCRRWAHPCPPS 271 S++VQ ++ + P Q+ R ES A A SQH P P+ +HP PP+ Sbjct: 217 SAEVQAPPPVVNVRVHHPPEASVQVHRIESSNAESA--APSQHLLPHPKP---SHPRPPT 271 Query: 272 QTPAG 286 Q P G Sbjct: 272 QKPLG 276
>STP2_BOVIN (P26377) Nuclear transition protein 2 (TP-2) (TP2)| Length = 131 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%) Frame = +2 Query: 59 QPQQGALST*HSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARSQHRPSPR 238 +PQ A S Q+ SR+ + +S + RP S ++ R++ +PS Sbjct: 20 RPQSHACHHCSCSQHCQSRSRSRSCRS------RSSSRRPRSHRSPTGHQGRARPQPSSE 73 Query: 239 CRRWAHPCPP-SQTPAGSGCS 298 + H PP S P CS Sbjct: 74 APQTHHALPPVSSRPVTHSCS 94
>KLHL1_MOUSE (Q9JI74) Kelch-like protein 1| Length = 751 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +2 Query: 194 AGAPDARSQHRPSPRCRRWAHPCPPSQTPAGSGC 295 +G D +H R + ++HP P S +PAG C Sbjct: 4 SGRKDFDVKHILRLRWKLFSHPSPASSSPAGGSC 37
>HSLU_COXBU (Q83A94) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 447 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = -3 Query: 368 VAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPTVDISVTADADFVRPELRQS 189 +A+ V++ S +G+R+ + +L + +F DK S+T DAD+V +L++ Sbjct: 383 IAYQVNDRSEN--IGARRLHTIMERLLEEVSFEATDKQGE----SITIDADYVNKQLKKL 436 Query: 188 A 186 A Sbjct: 437 A 437
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/36 (41%), Positives = 16/36 (44%) Frame = +2 Query: 173 RPESRQTAGAPDARSQHRPSPRCRRWAHPCPPSQTP 280 RP SR P +R Q P HPCPP Q P Sbjct: 747 RPPSR-----PPSRPQSVSRPPSEPPLHPCPPPQAP 777
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = +2 Query: 95 SSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARSQHRPSPRCRRWAHPCPPSQ 274 SSQVQ ++ T + K P + T D+++ RP+ + +HP P S+ Sbjct: 693 SSQVQAQAQVTTAPPLKTDSAKTSQSFPPTGDTITPLDSKAMPRPASDSKIVSHPGPTSE 752 Query: 275 T 277 + Sbjct: 753 S 753
>AKA10_HUMAN (O43572) A kinase anchor protein 10, mitochondrial precursor| (Protein kinase A-anchoring protein 10) (PRKA10) (Dual specificity A kinase-anchoring protein 2) (D-AKAP-2) Length = 662 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = +2 Query: 23 IIREETETTHSIQPQQGALST*HSSSQVQTASRTHTLQSMNCP--PIKK 163 ++ +E ++ HS++ + T S + Q +S T T+ S N P P+K+ Sbjct: 237 LLSQECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKE 285
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/75 (26%), Positives = 31/75 (41%) Frame = +2 Query: 56 IQPQQGALST*HSSSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARSQHRPSP 235 + PQQ L S +Q ++L + P RP+S+ +P R Q +PSP Sbjct: 2278 MSPQQHMLPNQAQSPHLQGQQIPNSLSNQVRSPQPVPSPRPQSQPPHSSPSPRMQPQPSP 2337 Query: 236 RCRRWAHPCPPSQTP 280 H P + +P Sbjct: 2338 H-----HVSPQTSSP 2347
>VIE2_HCMVT (P06435) 45 kDa immediate-early protein 2 (IE2)| Length = 410 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +2 Query: 95 SSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARS 217 S + S TH L MN PP+ L RP+ ++ + S Sbjct: 58 SGTPRVTSPTHPLSQMNHPPLPDPLGRPDEDSSSSSSSCSS 98
>VIE3_HCMVT (P06434) 30 kDa immediate-early protein 2 (IE2)| Length = 280 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +2 Query: 95 SSQVQTASRTHTLQSMNCPPIKKQLFRPESRQTAGAPDARS 217 S + S TH L MN PP+ L RP+ ++ + S Sbjct: 58 SGTPRVTSPTHPLSQMNHPPLPDPLGRPDEDSSSSSSSCSS 98 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,249,426 Number of Sequences: 219361 Number of extensions: 1126495 Number of successful extensions: 3524 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3370 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3509 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
