ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet42d04 |
|---|---|
| Clone Library Name | barley_pub |
>PNAA_PRUDU (P81898) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase| A (EC 3.5.1.52) (PNGase A) (Glycopeptide N-glycosidase) (N-glycanase) [Contains: Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A light chain (PNGase A small chain) Length = 571 Score = 57.0 bits (136), Expect = 2e-08 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Frame = -2 Query: 429 GSGTSSQRLMRRVEIGFVESRAGGGGAVTSTLRNEQVAEAEVVLRDDQVAGASWRMHQVY 250 G G + L+ V++GF+E ++G G + S+LRN + AE +V++++ V Q+Y Sbjct: 454 GQGNGTYLLITNVDLGFIEKKSGLGFS-NSSLRNLRSAEGNMVVKNNLVVSGLESTQQIY 512 Query: 249 NYGASNGG--CYLRNVTSVGYDVLFDNNVASC 160 Y +GG CY RN++S Y +L+D + C Sbjct: 513 RY---DGGKFCYFRNISSSNYTILYDKVGSKC 541
>DLDH_MYCTU (P66004) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) Length = 464 Score = 31.2 bits (69), Expect = 1.1 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = -2 Query: 378 VESRAGGGGAVTSTLRNEQVAEAEVVLRDDQVAGASWRMHQVYNYGASNGGCYLRNVTSV 199 VES A GG VT T+ + VA+ L+ ++V A V YG G L + ++ Sbjct: 235 VESIADGGSQVTVTVTKDGVAQE---LKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAI 291 Query: 198 GYDVLFDNNV 169 G D NV Sbjct: 292 GVDDYMRTNV 301
>DLDH_MYCBO (P66005) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) Length = 464 Score = 31.2 bits (69), Expect = 1.1 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = -2 Query: 378 VESRAGGGGAVTSTLRNEQVAEAEVVLRDDQVAGASWRMHQVYNYGASNGGCYLRNVTSV 199 VES A GG VT T+ + VA+ L+ ++V A V YG G L + ++ Sbjct: 235 VESIADGGSQVTVTVTKDGVAQE---LKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAI 291 Query: 198 GYDVLFDNNV 169 G D NV Sbjct: 292 GVDDYMRTNV 301
>PRIA_TREPA (O83258) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase| priA) (Replication factor Y) Length = 657 Score = 31.2 bits (69), Expect = 1.1 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 5/111 (4%) Frame = -2 Query: 396 RVEIGFV-----ESRAGGGGAVTSTLRNEQVAEAEVVLRDDQVAGASWRMHQVYNYGASN 232 R IGFV S A GGAV + +V + E + +A A W H Y + Sbjct: 42 RTLIGFVISESHSSPADCGGAVGTFKEIIRVIDREALFDQTHLACARWMAH---FYLCAL 98 Query: 231 GGCYLRNVTSVGYDVLFDNNVASCAGTRRR*RLSAGARQRGALE*LAGITG 79 G V S + ++ ASCAG RR + QR A++ + TG Sbjct: 99 GQALCAVVPSRKRERTL-SSFASCAGVRRTDTYALSGEQRKAIDAITASTG 148
>OBG_BACSU (P20964) Spo0B-associated GTP-binding protein| Length = 428 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +1 Query: 109 ATLASAGRQASTSARPGARRHIIVEKHVVADAGYV 213 AT A+ Q S + PG R+I++E V+AD G V Sbjct: 130 ATPANPAPQLSENGEPGKERYIVLELKVLADVGLV 164
>Y1145_VIBCH (Q9KSW1) Putative transport protein VC1145| Length = 558 Score = 28.5 bits (62), Expect = 7.2 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Frame = -2 Query: 387 IGFVESRA-------GGGGAVTSTLRNEQVAEAEVVLRDDQVAGASWRMHQVYNYGASNG 229 +GF +S A G L + +++E E+V++ D +AG ++ + S Sbjct: 274 VGFPDSHARLDPSFRNGKEVFDRNLLDLRISEEEIVVKSDSIAG-----KRLSDLNLSEY 328 Query: 228 GCYLRNVTSVGYDVLFDNNVASCAG 154 GC+L V ++ D ++ G Sbjct: 329 GCFLNRVVRAQIEMPMDLDIVLAKG 353
>CARA_PSESM (Q87WP3) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase glutamine chain) Length = 378 Score = 28.5 bits (62), Expect = 7.2 Identities = 25/86 (29%), Positives = 38/86 (44%) Frame = -2 Query: 363 GGGGAVTSTLRNEQVAEAEVVLRDDQVAGASWRMHQVYNYGASNGGCYLRNVTSVGYDVL 184 G G +++V A +V+RD + ++W RN S+G D L Sbjct: 61 GNTGTTPEDAESDRVWSAGLVIRDLPLVASNW-----------------RNKMSLG-DYL 102 Query: 183 FDNNVASCAGTRRR*RLSAGARQRGA 106 NNV + AG R RL+ R++GA Sbjct: 103 KANNVVAIAGIDTR-RLTRILREKGA 127
>Y889_VIBF1 (Q5E6G2) Putative transport protein VF0889| Length = 560 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 7/85 (8%) Frame = -2 Query: 387 IGFVESRA-------GGGGAVTSTLRNEQVAEAEVVLRDDQVAGASWRMHQVYNYGASNG 229 +G+ +S A G L + ++AE E+V++ D +AG ++ S Sbjct: 276 VGYPDSHARLDSSFRNGKEVFDRNLLDLRIAEEEIVVKSDNIAG-----KRLSELNLSEY 330 Query: 228 GCYLRNVTSVGYDVLFDNNVASCAG 154 GC+L V ++ ++++ G Sbjct: 331 GCFLNRVVRAQIEMPIEHDIVLAKG 355
>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) (Cast) (Cytomatrix protein p110) Length = 957 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -2 Query: 429 GSGTSSQRLMRRVEIGFVESRAGGGGAVTSTLRNEQV 319 GS + S RL R +G + +GGGG TL E + Sbjct: 13 GSPSRSPRLPRSPRLGHRRTSSGGGGGTGKTLSMENI 49
>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) Length = 957 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -2 Query: 429 GSGTSSQRLMRRVEIGFVESRAGGGGAVTSTLRNEQV 319 GS + S RL R +G + +GGGG TL E + Sbjct: 13 GSPSRSPRLPRSPRLGHRRTSSGGGGGTGKTLSMENI 49
>ERC2_HUMAN (O15083) ERC protein 2| Length = 957 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -2 Query: 429 GSGTSSQRLMRRVEIGFVESRAGGGGAVTSTLRNEQV 319 GS + S RL R +G + +GGGG TL E + Sbjct: 13 GSPSRSPRLPRSPRLGHRRTSSGGGGGTGKTLSMENI 49
>DNAJ_RHITR (Q93S23) Chaperone protein dnaJ (Fragment)| Length = 331 Score = 28.1 bits (61), Expect = 9.4 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = -2 Query: 327 EQVAEAEVVLRDDQVAGASWRM-HQVYNYGA-SNGGCYLRNVTSVGYDVLFDNNVASCAG 154 +++ EA L+D Q A R H + +G GG + G+ +F++ G Sbjct: 26 KEINEAYETLKDPQKRAAYDRYGHAAFEHGGMGGGGGFGAGFGGGGFSDIFEDIFGEMMG 85 Query: 153 TRRR*RLSAGARQRGA 106 R S+G R+RGA Sbjct: 86 GGRARGRSSGGRERGA 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,920,933 Number of Sequences: 219361 Number of extensions: 821144 Number of successful extensions: 2624 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2556 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2622 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
