ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet41f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBL_MLVCN (P23092) Transforming protein cbl 29 6.6
2CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) ... 29 6.6
3NADE_HALSA (Q9HNM7) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5) 29 6.6
4DUT_HHV6Z (P52541) Deoxyuridine 5'-triphosphate nucleotidohydrol... 28 8.6
5CLPH_ONCVO (P37801) Calponin homolog OV9M 28 8.6

>CBL_MLVCN (P23092) Transforming protein cbl|
          Length = 390

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 274 IKSTFQPSHRHHHQPASLPC 333
           +K  FQP H HHH     PC
Sbjct: 60  MKDAFQPHHHHHHLSPHPPC 79



to top

>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal|
           transduction protein CBL) (Proto-oncogene c-CBL)
           (Casitas B-lineage lymphoma proto-oncogene)
          Length = 913

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 274 IKSTFQPSHRHHHQPASLPC 333
           +K  FQP H HHH     PC
Sbjct: 28  MKDAFQPHHHHHHLSPHPPC 47



to top

>NADE_HALSA (Q9HNM7) NH(3)-dependent NAD(+) synthetase (EC 6.3.1.5)|
          Length = 268

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 110 GSSTKYGVGDRIVDRHPYEGLH*LTKREIGRSSASPDDALTR 235
           G  TKYG  D+ VD +P   L+ +  R++ R    P+D +T+
Sbjct: 158 GYYTKYG--DQAVDCNPIGNLYKMQVRQLARDLGVPEDLVTK 197



to top

>DUT_HHV6Z (P52541) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 376

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +1

Query: 163 RRITLINKT*NRSVFS*SR*CTNEDDKETTTAPVIT--GIKSTFQPSHRHHHQPASLPCF 336
           R I+L+    N +V   S+ C  E  +ET     +   G   TF P HR      +  C 
Sbjct: 72  RPISLLGIPQNGTV---SKTCKREKQRETDCVNYVRKHGNPVTFYPRHRAKRNANTDTCI 128

Query: 337 TTHPSTYAQHNR 372
           +  PS    H+R
Sbjct: 129 SEEPSILVSHHR 140



to top

>CLPH_ONCVO (P37801) Calponin homolog OV9M|
          Length = 378

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 334 SMEGKLAGGGDDERVGRWT 278
           +ME ++AG G  +RVGRWT
Sbjct: 21  TMETRVAGQGQPKRVGRWT 39


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,048,748
Number of Sequences: 219361
Number of extensions: 1240922
Number of successful extensions: 3008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top