Clone Information

BLAST Search Result

Clone Name	rbaet41e01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane ...	50	1e-06
2	PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ...	45	5e-05
3	PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic...	44	9e-05
4	PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic...	44	1e-04
5	PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ...	42	5e-04
6	PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic...	41	8e-04
7	PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic...	41	8e-04
8	PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ...	40	0.001
9	PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane ...	40	0.001
10	PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic...	39	0.002
11	PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ...	38	0.007
12	PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ...	37	0.009
13	PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic...	37	0.009
14	PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ...	37	0.011
15	PIP1_ATRCA (P42767) Aquaporin PIP-type	37	0.011
16	PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane ...	37	0.011
17	PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-respons...	35	0.043
18	PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic...	35	0.043
19	PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane ...	35	0.043
20	PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane ...	35	0.043
21	PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane ...	34	0.073
22	PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic...	33	0.12
23	PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic...	32	0.28
24	PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic...	32	0.28
25	PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic...	32	0.28
26	PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsi...	32	0.47
27	PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening...	32	0.47
28	PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane ...	30	1.4
29	MCR_HUMAN (P08235) Mineralocorticoid receptor (MR)	30	1.4
30	MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)	30	1.4
31	NRAM2_MOUSE (P49282) Natural resistance-associated macrophage pr...	30	1.8
32	GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated ...	30	1.8
33	SNPH_HUMAN (O15079) Syntaphilin	29	2.3
34	MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)	29	3.1
35	MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR)	29	3.1
36	MCR_RAT (P22199) Mineralocorticoid receptor (MR)	29	3.1
37	EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Co...	29	3.1
38	CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph...	28	4.0
39	MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)	28	5.2
40	ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing prote...	28	5.2
41	SPEE_BACSU (P70998) Spermidine synthase (EC 2.5.1.16) (Putrescin...	28	5.2
42	Y764_XANAC (Q8PPC2) UPF0102 protein XAC0764	28	5.2
43	SPEE_BACHD (Q9K6B8) Spermidine synthase (EC 2.5.1.16) (Putrescin...	28	6.8
44	DESA_SYNY3 (P20388) Fatty acid desaturase (EC 1.14.19.-) (Delta ...	27	8.9
45	EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-...	27	8.9
46	VIRD2_AGRT5 (P18592) T-DNA border endonuclease virD2 (EC 3.1.-.-)	27	8.9
47	GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated ...	27	8.9
48	FAD6C_SPIOL (P48629) Omega-6 fatty acid desaturase, chloroplast ...	27	8.9
49	FAD6C_SOYBN (P48628) Omega-6 fatty acid desaturase, chloroplast ...	27	8.9
50	FAD6C_BRANA (P48627) Omega-6 fatty acid desaturase, chloroplast ...	27	8.9
51	CSPG2_RAT (Q9ERB4) Versican core protein precursor (Large fibrob...	27	8.9
52	FAD6C_ARATH (P46312) Omega-6 fatty acid desaturase, chloroplast ...	27	8.9

>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic|
           protein 2.3) (OsPIP2.3)
          Length = 290

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSASF 319
           P IGAAIAA YHQYVLRASA K GSS+SF
Sbjct: 260 PLIGAAIAAAYHQYVLRASAAKLGSSSSF 288

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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 22/28 (78%), Positives = 22/28 (78%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSAS 322
           P IGAAIAA YHQYVLRASA K GS  S
Sbjct: 259 PLIGAAIAAAYHQYVLRASAAKLGSYRS 286

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>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)|
           (OsPIP2.5)
          Length = 283

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSAS 322
           PFIGAAIAALYHQ VLRASA  +GS  S
Sbjct: 254 PFIGAAIAALYHQIVLRASARGYGSFRS 281

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>PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4)|
           (OsPIP2.4)
          Length = 286

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSAS 322
           PFIGAAIAALYHQ +LRASA  +GS  S
Sbjct: 257 PFIGAAIAALYHQVILRASARGYGSFRS 284

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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 21/32 (65%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATK-FGSSASFGS 313
           P IGAA AA YHQ++LRA+A K  GS  SFGS
Sbjct: 255 PMIGAAAAAFYHQFILRAAAIKALGSFGSFGS 286

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>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)|
           (PIP2b) (TMP2b)
          Length = 285

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSASFGS 313
           PFIGAAIAA YHQ+VLRAS +K  S  SF S
Sbjct: 253 PFIGAAIAAFYHQFVLRASGSK--SLGSFRS 281

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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 22/31 (70%), Positives = 24/31 (77%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSASFGS 313
           PFIGAAIAA YHQ+VLRAS +K  S  SF S
Sbjct: 255 PFIGAAIAAFYHQFVLRASGSK--SLGSFRS 283

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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATK 340
           PF+GAAIAA YHQY+LRA A K
Sbjct: 260 PFVGAAIAAFYHQYILRAGAIK 281

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>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2e) (PIP2e)
          Length = 289

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 20/29 (68%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATK-FGSSAS 322
           PF+GAAIAA YHQ+VLRA A K +GS  S
Sbjct: 254 PFVGAAIAAFYHQFVLRAGAMKAYGSVRS 282

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>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)|
           (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced
           tonoplast intrinsic protein) (WSI-TIP)
          Length = 285

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSASFGS 313
           PFIGA IAA YHQ+VLRAS +K  S  SF S
Sbjct: 253 PFIGATIAAFYHQFVLRASGSK--SLGSFRS 281

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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/22 (77%), Positives = 18/22 (81%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATK 340
           PF GAAIAA YHQ+VLRA A K
Sbjct: 254 PFAGAAIAAFYHQFVLRAGAIK 275

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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSASFGS 313
           PF+GA  AA YHQY+LRA+A K  + ASF S
Sbjct: 246 PFVGALAAAAYHQYILRAAAIK--ALASFRS 274

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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATK 340
           PF+GA  AA YHQY+LRASA K
Sbjct: 248 PFLGALAAAAYHQYILRASAIK 269

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>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATK 340
           PFIGA  AA YHQY+LRA+A K
Sbjct: 250 PFIGALAAAAYHQYILRAAAIK 271

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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATK 340
           PF+GA  AA YHQYVLRA+A K
Sbjct: 250 PFVGALAAAAYHQYVLRAAAIK 271

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>PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 2.8) (OsPIP2.8)
          Length = 280

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSSASFGS 313
           PF GAA A +YH Y+LR +A K  +S+S+ S
Sbjct: 247 PFAGAAAAMIYHHYILRGAAAKAFASSSYRS 277

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>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein|
           7a) (Turgor-responsive protein 31)
          Length = 289

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AALYHQ V+RA
Sbjct: 266 PFIGAALAALYHQVVIRA 283

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>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)|
           (PIP1c) (Transmembrane protein B) (TMP-B)
          Length = 286

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AALYHQ V+RA
Sbjct: 262 PFIGAALAALYHQLVIRA 279

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>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic|
           protein 1d) (PIP1d)
          Length = 287

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AALYHQ V+RA
Sbjct: 263 PFIGAALAALYHQIVIRA 280

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>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic|
           protein 1.4) (Transmembrane protein C) (TMP-C)
          Length = 287

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AALYHQ V+RA
Sbjct: 263 PFIGAALAALYHQIVIRA 280

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>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic|
           protein 1.2) (OsPIP1.2)
          Length = 282

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AA+YHQ V+RA
Sbjct: 258 PFIGAALAAIYHQVVIRA 275

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>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1)
          Length = 289

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 12/18 (66%), Positives = 17/18 (94%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PF+GAA+AA+YHQ ++RA
Sbjct: 265 PFVGAALAAIYHQVIIRA 282

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>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)|
           (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2)
          Length = 286

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AALYH  V+RA
Sbjct: 262 PFIGAALAALYHVIVIRA 279

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>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AALYH  V+RA
Sbjct: 262 PFIGAALAALYHVVVIRA 279

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>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AALYH  V+RA
Sbjct: 262 PFIGAALAALYHVVVIRA 279

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>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)|
           (OsPIP1.3) (Water channel protein RWC3) (RWC-3)
          Length = 288

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           PFIGAA+AA+YH  V+RA
Sbjct: 264 PFIGAALAAIYHVVVIRA 281

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>PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening-associated|
           membrane protein) (RAMP)
          Length = 286

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRA 352
           P IGAA+AA+YHQ ++RA
Sbjct: 263 PMIGAALAAIYHQIIIRA 280

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>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic|
           protein 2.7) (OsPIP2.7)
          Length = 290

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 405 PFIGAAIAALYHQYVLRASATKFGSS 328
           P IGA +AA YH+ VLR  A K  SS
Sbjct: 257 PVIGAFLAAAYHKLVLRGEAAKALSS 282

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>MCR_HUMAN (P08235) Mineralocorticoid receptor (MR)|
          Length = 984

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 239 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 361
           N G+P  +PLSS  S++ +PP+   +      PN V L  S
Sbjct: 256 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSS 296

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>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)|
          Length = 984

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 239 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 361
           N G+P  +PLSS  S++ +PP+   +      PN V L  S
Sbjct: 256 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRSS 296

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>NRAM2_MOUSE (P49282) Natural resistance-associated macrophage protein 2 (NRAMP|
           2)
          Length = 568

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
 Frame = +1

Query: 28  KPNRTYTLHFKFPPKLPGCVHDM---------TVHHPHHS*TLHGSKH*LTKTHSIGREN 180
           KP+++  L   F P  PGC              V  PH+   LH +   L K+  + R N
Sbjct: 230 KPSQSQVLRGMFVPSCPGCRTPQVEQAVGIVGAVIMPHNM-YLHSA---LVKSRQVNRAN 285

Query: 181 KQQARAASR 207
           KQ+ R A++
Sbjct: 286 KQEVREANK 294

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>GLI1_MOUSE (P47806) Zinc finger protein GLI1 (Glioma-associated oncogene|
           homolog)
          Length = 1111

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 28/107 (26%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
 Frame = +1

Query: 22  AHKPNRTYTLHFKFPPKLPGCV-----------HDMTVHHPH-HS*TLHGSKH*LTKTHS 165
           A   NRT++    +  KLPGC            H  TVH P  H    H     L +   
Sbjct: 352 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLPRAQP 411

Query: 166 IGRENKQQARAASRGKQRRAQRPAESRDPNGGPSVLCHIYSSYASDH 306
           +     ++ R    G++       ES  P   P       SS +SDH
Sbjct: 412 LSTVEPKREREGGSGREESRLTVPESAMPQQSPGA----QSSCSSDH 454

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>SNPH_HUMAN (O15079) Syntaphilin|
          Length = 538

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 148 LTKTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGPSV 270
           LT+THS+   +   +R  S G +RR   P   RD  G  S+
Sbjct: 38  LTRTHSLMAMSLPGSRRTSAGSRRRTSPPVSVRDAYGTSSL 78

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>MCR_MOUSE (Q8VII8) Mineralocorticoid receptor (MR)|
          Length = 978

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 239 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 361
           N G+P  +PLSS  S + +PP+   +      PN V L  S
Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSS 296

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>MCR_TUPGB (Q29131) Mineralocorticoid receptor (MR)|
          Length = 977

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 239 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVAL 352
           N G+P  +PLSS  S + +PP+   +      PN V L
Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVTL 293

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>MCR_RAT (P22199) Mineralocorticoid receptor (MR)|
          Length = 981

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 239 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLVALALS 361
           N G+P  +PLSS  S + +PP+   +      PN V L  S
Sbjct: 256 NVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSS 296

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>EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Contains:|
           Epidermal growth factor]
          Length = 1133

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 169 GRENKQQARAASRGKQRRAQ--RPAESRDPNGGPSVLCHIYS 288
           G EN+ QA  + R KQRR Q       RDPN   S     Y+
Sbjct: 306 GTENRAQASDSERCKQRRGQCLYSLSERDPNSDSSACAEGYT 347

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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 85  VHDMTVHHPHHS*TLHGSKH*LTKTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGP 264
           VH +  HH HH    H   H    T  + R + +     + G +R    P  +  P+GGP
Sbjct: 491 VHHLVHHHHHH----HHHYHLGNGTLRVPRASPEIQDRDANGSRRLMLPPPSTPTPSGGP 546

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>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)|
          Length = 982

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 239 NPGTPTEAPLSSAISTVHTPPTI*RLPKEADEPNLV 346
           N G+P  +PLSS  S++ +PP+   +      PN V
Sbjct: 255 NVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNV 290

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>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +1

Query: 103 HHPHHS*TLHGSKH*LTKTHSIGR-----ENKQQARAASRGKQRRAQRPAESRDPNGG 261
           HH HH+   H   H L   H++ +     + +QQ +   + +Q++ Q P  + +  GG
Sbjct: 85  HHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGG 142

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>SPEE_BACSU (P70998) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 276

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 355 PQHVLVVQGGDGG 393
           P+HVLVV GGDGG
Sbjct: 77  PEHVLVVGGGDGG 89

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>Y764_XANAC (Q8PPC2) UPF0102 protein XAC0764|
          Length = 122

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -3

Query: 301 RRRMNCRYGRGQRGLRWGPWILLVFARASAFLGSPPALAA 182
           R R + R+G G   + W     LV A A  FLG+ PALAA
Sbjct: 55  RYRRDDRFGGGAASVDWRKRRKLVLA-AQLFLGAHPALAA 93

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>SPEE_BACHD (Q9K6B8) Spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 275

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 355 PQHVLVVQGGDGG 393
           P+HVLVV GGDGG
Sbjct: 76  PKHVLVVGGGDGG 88

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>DESA_SYNY3 (P20388) Fatty acid desaturase (EC 1.14.19.-) (Delta 12 desaturase)|
          Length = 351

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 19  SAHKPNRTYTLHFKFPPKLPGCVHDMTVHHPHH 117
           SA +     T+H  +P  +    HD+ VH PHH
Sbjct: 259 SAAEAQLNGTVHCDYPRWVEVLCHDINVHIPHH 291

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>EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)|
          Length = 411

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 169 GRENKQQARAASRGKQRRAQRPAESRDPN 255
           GRE  ++A AA+ G +   + P E + PN
Sbjct: 229 GREEAERAAAAADGAEEEDEAPREKKKPN 257

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>VIRD2_AGRT5 (P18592) T-DNA border endonuclease virD2 (EC 3.1.-.-)|
          Length = 447

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 154 KTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGPS 267
           +T  I R   + A   +  +QRRA+RP    D +GGPS
Sbjct: 315 RTPDIPRAATEAATHTTHDRQRRAKRP---HDDDGGPS 349

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>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)|
           (Oncogene GLI)
          Length = 1106

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
 Frame = +1

Query: 22  AHKPNRTYTLHFKFPPKLPGCV-----------HDMTVHHPH-HS*TLHGSKH*LTKTHS 165
           A   NRT++    +  KLPGC            H  TVH P  H    H     L +  S
Sbjct: 349 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHGPDAHVTKRHRGDGPLPRAPS 408

Query: 166 IGR-ENKQQARAASRGKQRRAQRPAESRDPNGGPSVLCHIYSSYASDH 306
           I   E K++       ++ R   P  +  P   P       SS +SDH
Sbjct: 409 ISTVEPKREREGGPIREESRLTVPEGAMKPQPSPGA----QSSCSSDH 452

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>FAD6C_SPIOL (P48629) Omega-6 fatty acid desaturase, chloroplast precursor (EC|
           1.14.19.-)
          Length = 447

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 46  TLHFKFPPKLPGCVHDMTVHHPHH 117
           T+H  +P  +    HD++VH PHH
Sbjct: 348 TVHCDYPRWIEILCHDISVHIPHH 371

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>FAD6C_SOYBN (P48628) Omega-6 fatty acid desaturase, chloroplast precursor (EC|
           1.14.19.-)
          Length = 424

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 46  TLHFKFPPKLPGCVHDMTVHHPHH 117
           T+H  +P  +    HD+ VH PHH
Sbjct: 342 TVHCDYPKWIEILCHDINVHIPHH 365

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>FAD6C_BRANA (P48627) Omega-6 fatty acid desaturase, chloroplast precursor (EC|
           1.14.19.-)
          Length = 443

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 46  TLHFKFPPKLPGCVHDMTVHHPHH 117
           T+H  +P  +    HD+ VH PHH
Sbjct: 343 TVHCDYPSWIEILCHDINVHIPHH 366

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>CSPG2_RAT (Q9ERB4) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP) (Fragments)
          Length = 2738

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 242  PGTPTEAPLSS---AISTVHTPPTI*RLPKEADEPNLVALAL 358
            P + TE  L++    +ST+H P  +     E D+PN+ A++L
Sbjct: 2027 PVSSTETELNTFFPTVSTLHIPSKLTTASPEIDKPNIEAISL 2068

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>FAD6C_ARATH (P46312) Omega-6 fatty acid desaturase, chloroplast precursor (EC|
           1.14.19.-)
          Length = 448

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 46  TLHFKFPPKLPGCVHDMTVHHPHH 117
           T+H  +P  +    HD+ VH PHH
Sbjct: 348 TVHCDYPSWIEILCHDINVHIPHH 371


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,499,235
Number of Sequences: 219361
Number of extensions: 1044371
Number of successful extensions: 3157
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3156
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result