Clone Information

BLAST Search Result

Clone Name	rbaet41d10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	COL11_ARATH (O23379) Putative zinc finger protein CONSTANS-LIKE 11	62	4e-10
2	COL13_ARATH (O82256) Zinc finger protein CONSTANS-LIKE 13	61	9e-10
3	COL15_ARATH (Q9C7E8) Zinc finger protein CONSTANS-LIKE 15	60	2e-09
4	COL14_ARATH (O22800) Zinc finger protein CONSTANS-LIKE 14	59	6e-09
5	COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5	58	1e-08
6	COL12_ARATH (Q9LJ44) Putative zinc finger protein CONSTANS-LIKE 12	57	2e-08
7	CONS_ARATH (Q39057) Zinc finger protein CONSTANS	55	5e-08
8	COL9_ARATH (Q9SSE5) Zinc finger protein CONSTANS-LIKE 9	55	5e-08
9	COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4	55	6e-08
10	COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3	55	8e-08
11	COL10_ARATH (Q9LUA9) Zinc finger protein CONSTANS-LIKE 10	54	1e-07
12	COL8_ARATH (Q9M9B3) Putative zinc finger protein CONSTANS-LIKE 8	54	1e-07
13	COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6	53	2e-07
14	COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7	53	3e-07
15	COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1	52	4e-07
16	COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16	52	5e-07
17	COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2	51	9e-07
18	PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73...	49	6e-06
19	APRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7...	46	3e-05
20	PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37...	45	5e-05
21	APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5...	44	1e-04
22	PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95...	44	2e-04
23	APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9...	44	2e-04
24	APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1...	40	0.002
25	PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1 (...	40	0.003
26	APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3...	40	0.003
27	GAT27_ARATH (Q8GXL7) GATA transcription factor 27 (ZIM-like 1 pr...	35	0.052
28	GAT25_ARATH (Q8H1G0) GATA transcription factor 25 (ZIM-like 2 pr...	35	0.068
29	GAT26_ARATH (Q9LRH6) GATA transcription factor 26 (ZIM protein)	33	0.34
30	KSGA_PSEPK (Q88QT6) Dimethyladenosine transferase (EC 2.1.1.-) (...	30	2.9
31	FA53C_PONPY (Q5R815) Protein FAM53C	29	3.7
32	FA53C_HUMAN (Q9NYF3) Protein FAM53C	29	3.7
33	FA53C_MOUSE (Q8BXQ8) Protein FAM53C	29	3.7
34	SNPC2_HUMAN (Q13487) snRNA-activating protein complex subunit 2 ...	28	6.4
35	ZF106_HUMAN (Q9H2Y7) Zinc finger protein 106 homolog (Zfp-106) (...	28	6.4
36	TGB1_P1AMV (Q07517) TGB1 helicase (EC 3.6.1.-) (Triple gene bloc...	28	6.4
37	ROCK1_RAT (Q63644) Rho-associated protein kinase 1 (EC 2.7.11.1)...	28	6.4
38	ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11....	28	6.4
39	KSGA_PSESM (Q88A46) Dimethyladenosine transferase (EC 2.1.1.-) (...	28	8.3
40	ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11....	28	8.3
41	ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11....	28	8.3

>COL11_ARATH (O23379) Putative zinc finger protein CONSTANS-LIKE 11|
          Length = 330

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 29/43 (67%), Positives = 33/43 (76%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKS 177
           RD+   RYK+K+  RMFGKQIRY SRKARAD R R+ GRF KS
Sbjct: 276 RDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVKS 318

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>COL13_ARATH (O82256) Zinc finger protein CONSTANS-LIKE 13|
          Length = 332

 Score = 61.2 bits (147), Expect = 9e-10
 Identities = 27/45 (60%), Positives = 36/45 (80%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS 174
           +R+  +SRYKEK+K+R + K IRYESRK RA+ R RI GRFAK++
Sbjct: 286 ERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 330

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>COL15_ARATH (Q9C7E8) Zinc finger protein CONSTANS-LIKE 15|
          Length = 433

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS 174
           +R   + RYKEKRK R + K IRYESRKARAD R+R+ GRF K+S
Sbjct: 384 NRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKAS 428

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>COL14_ARATH (O22800) Zinc finger protein CONSTANS-LIKE 14|
          Length = 402

 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 25/45 (55%), Positives = 35/45 (77%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS 174
           +RD  + RYKEK+K R + K IRYE+RKARA+ R+R+ GRF K++
Sbjct: 356 NRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKAT 400

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>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5|
          Length = 355

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 29/51 (56%), Positives = 34/51 (66%)
 Frame = -2

Query: 332 GGYDVVYPDRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           G +     DR+  + RY+EKRKNR F K IRY SRKA A+ R RI GRFAK
Sbjct: 276 GDHQASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAK 326

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>COL12_ARATH (Q9LJ44) Putative zinc finger protein CONSTANS-LIKE 12|
          Length = 337

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKS 177
           R++   RYKEK+  R FGKQIRY SRKARAD R R+ GRF K+
Sbjct: 280 RNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKA 322

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>CONS_ARATH (Q39057) Zinc finger protein CONSTANS|
          Length = 373

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           DR+  + RY+EKRK R F K IRY SRKA A+ R R+NGRFAK
Sbjct: 305 DREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAK 347

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>COL9_ARATH (Q9SSE5) Zinc finger protein CONSTANS-LIKE 9|
          Length = 372

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKS 177
           R+  + RYKEK+K R F K++RY SRKARAD R R+ GRF K+
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKA 357

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>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4|
          Length = 362

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           +R+  + RY+EKRKNR F K IRY SRKA A+ R RI GRFAK
Sbjct: 294 EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 336

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>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3|
          Length = 294

 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           +R+  + RY+EKRKNR F K IRY SRKA A+ R RI GRFAK
Sbjct: 228 EREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAK 270

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>COL10_ARATH (Q9LUA9) Zinc finger protein CONSTANS-LIKE 10|
          Length = 373

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 25/43 (58%), Positives = 31/43 (72%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKS 177
           R+  + RYKEK+K R F K++RY SRK RAD R R+ GRF KS
Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKS 358

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>COL8_ARATH (Q9M9B3) Putative zinc finger protein CONSTANS-LIKE 8|
          Length = 313

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 25/48 (52%), Positives = 34/48 (70%)
 Frame = -2

Query: 317 VYPDRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS 174
           V  +R+  + RY++KRKNR+F K+IRYE RK  AD R R+ GRF + S
Sbjct: 261 VRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 308

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>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6|
          Length = 406

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS 174
           R+  +SRY+EKR+ R+F K+IRYE RK  A+ R R+ GRF K S
Sbjct: 357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 400

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>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7|
          Length = 392

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           +R+  + RYKEKR+ R+F K+IRYE RK  A+ R RI GRF K
Sbjct: 344 EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVK 386

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>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1|
          Length = 355

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 26/43 (60%), Positives = 31/43 (72%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           DR+  + RY+EK+K R F K IRY SRKA A+ R RI GRFAK
Sbjct: 285 DREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAK 327

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>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16|
          Length = 417

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           R+  +SRY+EKR+ R+F K+IRYE RK  A+ R R+ GRF K
Sbjct: 361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 402



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 177 ELVVDFKDRRHFVSVVYRTLYVAWTCEGAATEPPWHTYSPPPRDVSVS 34
           E VV  K+  H   ++ R  Y +         PPW +  PP RD+ +S
Sbjct: 279 ECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDIS 326

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>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2|
          Length = 347

 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 25/43 (58%), Positives = 31/43 (72%)
 Frame = -2

Query: 308 DRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           +R+  + RY+EK+K R F K IRY SRKA A+ R RI GRFAK
Sbjct: 277 EREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAK 319

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>PRR73_ORYSA (Q689G4) Two-component response regulator-like PRR73|
           (Pseudo-response regulator 73) (OsPRR73)
          Length = 767

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 20/44 (45%), Positives = 33/44 (75%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS 174
           R+  ++++++KRK R FGK++RY+SRK  A+ R RI G+F + S
Sbjct: 712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQS 755

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>APRR7_ARATH (Q93WK5) Two-component response regulator-like APRR7|
           (Pseudo-response regulator 7)
          Length = 727

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 20/53 (37%), Positives = 36/53 (67%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS***ISRTDD 147
           R+  ++++++KRK R F K++RY+SRK  A+ R R+ G+F + +    + TDD
Sbjct: 669 REAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKT---AAATDD 718

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>PRR37_ORYSA (Q689G8) Two-component response regulator-like PRR37|
           (Pseudo-response regulator 37) (OsPRR37)
          Length = 742

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 18/44 (40%), Positives = 31/44 (70%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS 174
           R   + ++++KRK R FGK++RY+SRK  A+ R R+ G+F + +
Sbjct: 682 RVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQA 725

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>APRR5_ARATH (Q6LA42) Two-component response regulator-like APRR5|
           (Pseudo-response regulator 5)
          Length = 558

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 31/42 (73%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           R+  +++++ KRK+R + K++RYESRK  A+ R RI G+F +
Sbjct: 509 REAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVR 550

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>PRR95_ORYSA (Q689G6) Two-component response regulator-like PRR95|
           (Pseudo-response regulator 95) (OsPRR95)
          Length = 623

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 31/42 (73%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           R+  +++++ KRK+R F K++RY+SRK  A+ R R+ G+F +
Sbjct: 574 REAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVR 615

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>APRR9_ARATH (Q8L500) Two-component response regulator-like APRR9|
           (Pseudo-response regulator 9)
          Length = 468

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 17/43 (39%), Positives = 31/43 (72%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKS 177
           R+  + +++ KRK+R F K++RY+SRK  A+ R R+ G+F ++
Sbjct: 417 REAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRT 459

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>APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1|
           (Pseudo-response regulator 1) (Timing of CAB expression
           1) (ABI3-interacting protein 1)
          Length = 618

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 16/42 (38%), Positives = 28/42 (66%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           R++ + +++ KR  R F K+IRY +RK  A+ R R+ G+F +
Sbjct: 533 REEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVR 574

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>PRR1_ORYSA (Q689G9) Two-component response regulator-like PRR1|
           (Pseudo-response regulator 1) (OsPRR1)
          Length = 518

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = -2

Query: 305 RDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKSS 174
           R   +++++ KRK R F K++RY +RK  A+ R R+ G+F + +
Sbjct: 443 RAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQA 486

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>APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3|
           (Pseudo-response regulator 3)
          Length = 495

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -2

Query: 314 YPDRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAK 180
           +  R+  + +++ KRK R F K++RY SRK  A+ R  + G+F +
Sbjct: 439 WAQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIR 483

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>GAT27_ARATH (Q8GXL7) GATA transcription factor 27 (ZIM-like 1 protein)|
          Length = 297

 Score = 35.4 bits (80), Expect = 0.052
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 311 PDRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRF--AKSS 174
           P R   + R++EKRK R F K IRY  RK  A    R  G+F  AKSS
Sbjct: 141 PQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSS 188

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>GAT25_ARATH (Q8H1G0) GATA transcription factor 25 (ZIM-like 2 protein)|
          Length = 302

 Score = 35.0 bits (79), Expect = 0.068
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -2

Query: 311 PDRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKS 177
           P R   + R++EKRK R F K+IRY  RK  A    R  G+F  +
Sbjct: 145 PQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSA 189

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>GAT26_ARATH (Q9LRH6) GATA transcription factor 26 (ZIM protein)|
          Length = 309

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 311 PDRDKVISRYKEKRKNRMFGKQIRYESRKARADGRVRINGRFAKS 177
           P R + + R+++KR  R F K++RY  R+  A    R  G+F  S
Sbjct: 144 PQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSS 188

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>KSGA_PSEPK (Q88QT6) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 267

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 171 LARLGEAAVDPHPAVGAGLARLVPDLLPEHPVFPLLLVARDHLVPVRV 314
           L  +G  A +P P V + + RLVP     H V P    A+DHL+  RV
Sbjct: 170 LFNVGPGAFNPPPKVDSAIVRLVP-----HEVLP--FPAKDHLLLERV 210

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>FA53C_PONPY (Q5R815) Protein FAM53C|
          Length = 392

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 225 GPRRRQGEDQRPLRQVELVVDFKDRRHFVSVVYRTLYVAWTCEGAATEPPWH-TYSPPPR 49
           G +RR  ED R LR     +DF D+ +               EG++  PPW    SPPP 
Sbjct: 284 GVKRRHEEDPRRLRPS---LDF-DKMNQKPYSGGLCLQETAREGSSISPPWFMACSPPPL 339

Query: 48  DVSVSPCHCASYIV 7
             S SP   +S ++
Sbjct: 340 SASCSPTGGSSQVL 353

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>FA53C_HUMAN (Q9NYF3) Protein FAM53C|
          Length = 392

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -1

Query: 225 GPRRRQGEDQRPLRQVELVVDFKDRRHFVSVVYRTLYVAWTCEGAATEPPWH-TYSPPPR 49
           G +RR  ED R LR     +DF D+ +               EG++  PPW    SPPP 
Sbjct: 284 GVKRRHEEDPRRLRPS---LDF-DKMNQKPYSGGLCLQETAREGSSISPPWFMACSPPPL 339

Query: 48  DVSVSPCHCASYIV 7
             S SP   +S ++
Sbjct: 340 SASCSPTGGSSQVL 353

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>FA53C_MOUSE (Q8BXQ8) Protein FAM53C|
          Length = 393

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 225 GPRRRQGEDQRPLRQVELVVDFKDRRHFVSVVYRTLYVAWTCEGAATEPPWH-TYSPPPR 49
           G +RR  ED R LR   L  D  +++ +   +   L      EG+   PPW    SPPP 
Sbjct: 284 GVKRRHEEDCRRLRP-SLDFDKMNQKPYSGGL--CLQETAREEGSNVSPPWFMACSPPPL 340

Query: 48  DVSVSPCHCASYIV 7
             S SP   +S ++
Sbjct: 341 SASCSPVEGSSQVL 354

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>SNPC2_HUMAN (Q13487) snRNA-activating protein complex subunit 2 (SNAPc subunit|
           2) (snRNA-activating protein complex 45 kDa subunit)
           (SNAPc 45 kDa subunit) (Small nuclear RNA-activating
           complex polypeptide 2) (Proximal sequence
           element-binding transcripti
          Length = 334

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = -1

Query: 285 LQGEEEKQDVREADPVRVAQGPRRRQGEDQRPLRQVELVVDFKDRRHFVSVVYRTLYVAW 106
           L+G   ++ +++  P  + QGPRRR+ +   P   +E+  D  ++      +   L VA+
Sbjct: 69  LKGRVAREAIQKVHPGGL-QGPRRREAQPPAP---IEVWTDLAEK--ITGPLEEALAVAF 122

Query: 105 T--CEGAATEPPWHTYSPPPR 49
           +     AATEP    +S PP+
Sbjct: 123 SQVLTIAATEPVTLLHSKPPK 143

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>ZF106_HUMAN (Q9H2Y7) Zinc finger protein 106 homolog (Zfp-106) (Zinc finger|
           protein 474)
          Length = 1883

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 19/79 (24%), Positives = 38/79 (48%)
 Frame = -1

Query: 282 QGEEEKQDVREADPVRVAQGPRRRQGEDQRPLRQVELVVDFKDRRHFVSVVYRTLYVAWT 103
           +GEEE++D  + + +++ +  + +  +D+      E+  D  DRR       R   + + 
Sbjct: 58  KGEEEEEDYFDKELIQLIKQRKEQSRQDEPSNSNQEINSD--DRR---PQWRREDRIPYQ 112

Query: 102 CEGAATEPPWHTYSPPPRD 46
              + ++P WH   PP RD
Sbjct: 113 DRESYSQPAWHHRGPPQRD 131

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>TGB1_P1AMV (Q07517) TGB1 helicase (EC 3.6.1.-) (Triple gene block 1 protein)|
           (TGBp1) (25 kDa protein) (ORF 2 protein)
          Length = 230

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 204 HPAVGAGLARLVPDLLPEHP 263
           H   GAG   L+ +LLPEHP
Sbjct: 27  HAVAGAGKTTLIQNLLPEHP 46

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>ROCK1_RAT (Q63644) Rho-associated protein kinase 1 (EC 2.7.11.1)|
            (Rho-associated, coiled-coil-containing protein kinase 1)
            (p160 ROCK-1) (p160ROCK) (p150 RhoA-binding kinase ROK
            beta) (Liver regeneration-related protein LRRG199)
          Length = 1369

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = -1

Query: 270  EKQDVREADPVRVAQGPRRRQGEDQRPLRQVELVVDFKDRRH-FVSVVYRTLYVAWTCEG 94
            E +++ +   +  A     R+  +  P++Q E       + H F+  +Y   +    CE 
Sbjct: 1203 ETEEIPKIFQILYANEGECRKDIEVEPVQQGEKTNFQNHKGHEFIPTLY---HFPANCEA 1259

Query: 93   AATEPPWHTYSPPPRDVSVSPCHCASY 13
             A +P WH + PPP  +    CH  S+
Sbjct: 1260 CA-KPLWHVFKPPPA-LECRRCHVKSH 1284

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>ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11.1)|
            (Rho-associated, coiled-coil-containing protein kinase 1)
            (p160 ROCK-1) (p160ROCK) (cAMP-dependent protein kinase
            ROCK-I) (CePKA) (Corneal epithelial
            Rho-associated-Ser/Thr kinase 1) (HEB
          Length = 1354

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -1

Query: 270  EKQDVREADPVRVAQGPRRRQGEDQRPLRQVELVVDFKDRRH-FVSVVYRTLYVAWTCEG 94
            E +++ +   +  A     R+  +  P++Q E       + H F+  +Y   +    CE 
Sbjct: 1188 ETEEIPKIFQILYANEGECRKDVEVEPVQQAEKTNFQNHKGHEFIPTLY---HFPANCEA 1244

Query: 93   AATEPPWHTYSPPPRDVSVSPCH 25
             A +P WH + PPP  +    CH
Sbjct: 1245 CA-KPLWHVFKPPPA-LECRRCH 1265

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>KSGA_PSESM (Q88A46) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 268

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 171 LARLGEAAVDPHPAVGAGLARLVPDLLPEHPVFPLLLVARDHLVPVRV 314
           L  +G  A +P P V + + RLVP     HP       A+DH V  RV
Sbjct: 170 LFNVGPGAFNPPPKVDSAIVRLVPYETLPHP-------AKDHRVLERV 210

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>ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11.1)|
            (Rho-associated, coiled-coil-containing protein kinase 1)
            (p160 ROCK-1) (p160ROCK) (Fragment)
          Length = 1003

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -1

Query: 270  EKQDVREADPVRVAQGPRRRQGEDQRPLRQVELVVDFKDRRH-FVSVVYRTLYVAWTCEG 94
            E +++ +   +  A     R+  +  P++Q E       + H F+  +Y   +    C+ 
Sbjct: 837  ETEEIPKIFQILYANEGECRKDVEMEPVQQAEKTNFQNHKGHEFIPTLY---HFPANCDA 893

Query: 93   AATEPPWHTYSPPPRDVSVSPCH 25
             A +P WH + PPP  +    CH
Sbjct: 894  CA-KPLWHVFKPPPA-LECRRCH 914

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>ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11.1)|
            (Rho-associated, coiled-coil-containing protein kinase 1)
            (p160 ROCK-1) (p160ROCK) (NY-REN-35 antigen)
          Length = 1354

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -1

Query: 270  EKQDVREADPVRVAQGPRRRQGEDQRPLRQVELVVDFKDRRH-FVSVVYRTLYVAWTCEG 94
            E +++ +   +  A     R+  +  P++Q E       + H F+  +Y   +    C+ 
Sbjct: 1188 ETEEIPKIFQILYANEGECRKDVEMEPVQQAEKTNFQNHKGHEFIPTLY---HFPANCDA 1244

Query: 93   AATEPPWHTYSPPPRDVSVSPCH 25
             A +P WH + PPP  +    CH
Sbjct: 1245 CA-KPLWHVFKPPPA-LECRRCH 1265


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,697,416
Number of Sequences: 219361
Number of extensions: 686142
Number of successful extensions: 2874
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2873
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result