ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet41b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189533.1| Oryza sativa (japonica cultivar-group), mRNA 248 1e-62
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 248 1e-62
3dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic D... 248 1e-62
4dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 248 1e-62
5gb|BT018886.1| Zea mays clone EL01T0205E01.d mRNA sequence 236 6e-59
6gb|AY106881.1| Zea mays PCO146606 mRNA sequence 232 9e-58
7ref|XM_476061.1| Oryza sativa (japonica cultivar-group), predic... 220 3e-54
8gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 220 3e-54
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 220 3e-54
10dbj|AK100028.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 3e-54
11dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 9e-21
12dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic D... 109 9e-21
13dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic D... 109 9e-21
14dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 9e-21
15ref|NM_189610.2| Oryza sativa (japonica cultivar-group), mRNA 50 0.007
16ref|XM_475572.1| Oryza sativa (japonica cultivar-group), predic... 50 0.007
17dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
18dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
19dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
20dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
21dbj|AK069868.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
22dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
23dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
24dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
25gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
26ref|NM_183606.1| Oryza sativa (japonica cultivar-group), predic... 48 0.027
27dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
28dbj|AK070443.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
29dbj|AK060689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.027
30gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 46 0.11
31gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.7
32gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence 42 1.7
33emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.7
34gb|DQ227316.1| Synthetic construct VAR2CSA mRNA, partial cds 42 1.7
35emb|X64701.1|HMGVPG H.mediterranei genes gvpA, gvpC to gvpO 42 1.7
36gb|AY110165.1| Zea mays CL20454_1 mRNA sequence 42 1.7
37gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 6.6
38gb|AC125010.6| Mus musculus chromosome 10, clone RP24-117L12, co... 40 6.6
39ref|XM_842720.1| Leishmania major strain Friedlin hypothetical p... 40 6.6
40emb|AL713917.6| Mouse DNA sequence from clone RP23-352L3 on chro... 40 6.6
41gb|AE011727.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.6
42dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 6.6
43gb|AC160964.1| Mus musculus BAC clone RP24-316G24 from chromosom... 40 6.6
44dbj|AB185544.1| Uncultured rumen bacterium gene for 16S rRNA, pa... 40 6.6
45dbj|AB084949.2| Mus musculus Stx-7 gene for syntaxin-7, complete... 40 6.6
46gb|AF545580.1|AF545580S1 Micromonospora megalomicea subsp. nigra... 40 6.6
47dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.6
48gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 40 6.6
49emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chro... 40 6.6
50gb|AC090534.10| Mus musculus Strain C57BL6/J chromosome 18 BAC, ... 40 6.6 
>ref|NM_189533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1314

 Score =  248 bits (125), Expect = 1e-62
 Identities = 218/249 (87%)
 Strand = Plus / Minus

                                                                        
Query: 227  tcagttcatgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactg 286
            |||||||| |||||| |  ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1314 tcagttcaggtcgaggaggccctcgtggaaggcggcgacgcggtcgggggtgacgcactg 1255

                                                                        
Query: 287  ggtgatcagccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgat 346
            |||||| ||||| || || |||||||| ||||| ||| | || || |||||||| |||||
Sbjct: 1254 ggtgatgagccgggccccgggcttgtgggcccagggcctgacgaggatgcacgtggcgat 1195

                                                                        
Query: 347  gtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccagccgtagtcgacctc 406
            ||||||||||||||| || ||||||||||| ||||| || ||||| |||||||| |||||
Sbjct: 1194 gtagtccaggttcgtcagtggcacgacgtgggccggtgggccccacccgtagtccacctc 1135

                                                                        
Query: 407  ggcgaacccgagccgcgtccagtccgacaccaacagcgtccggtagtccgacgtgatctg 466
            |||||| || ||||| |||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 1134 ggcgaagcccagccgggtccagtccgacaccagcagcgtccggtagtcggaggtgatctg 1075

                     
Query: 467  atacgggtc 475
             ||||||||
Sbjct: 1074 gtacgggtc 1066
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  248 bits (125), Expect = 1e-62
 Identities = 218/249 (87%)
 Strand = Plus / Plus

                                                                           
Query: 227     tcagttcatgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactg 286
               |||||||| |||||| |  ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 4109690 tcagttcaggtcgaggaggccctcgtggaaggcggcgacgcggtcgggggtgacgcactg 4109749

                                                                           
Query: 287     ggtgatcagccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgat 346
               |||||| ||||| || || |||||||| ||||| ||| | || || |||||||| |||||
Sbjct: 4109750 ggtgatgagccgggccccgggcttgtgggcccagggcctgacgaggatgcacgtggcgat 4109809

                                                                           
Query: 347     gtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccagccgtagtcgacctc 406
               ||||||||||||||| || ||||||||||| ||||| || ||||| |||||||| |||||
Sbjct: 4109810 gtagtccaggttcgtcagtggcacgacgtgggccggtgggccccacccgtagtccacctc 4109869

                                                                           
Query: 407     ggcgaacccgagccgcgtccagtccgacaccaacagcgtccggtagtccgacgtgatctg 466
               |||||| || ||||| |||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 4109870 ggcgaagcccagccgggtccagtccgacaccagcagcgtccggtagtcggaggtgatctg 4109929

                        
Query: 467     atacgggtc 475
                ||||||||
Sbjct: 4109930 gtacgggtc 4109938



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 391     agccgtagtcgacctcggcgaacccgagc 419
               |||||||||| ||||||||||||||||||
Sbjct: 4531436 agccgtagtccacctcggcgaacccgagc 4531408



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 371      gacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccagtc 430
                |||||||| |||||| ||||| ||||||||  ||||   |||||| ||||||||||||||
Sbjct: 10559784 gacgtgcgacggcggcccccacccgtagtccgcctccaggaaccccagccgcgtccagtc 10559843
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>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0509B06
          Length = 104515

 Score =  248 bits (125), Expect = 1e-62
 Identities = 218/249 (87%)
 Strand = Plus / Plus

                                                                         
Query: 227   tcagttcatgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactg 286
             |||||||| |||||| |  ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 76433 tcagttcaggtcgaggaggccctcgtggaaggcggcgacgcggtcgggggtgacgcactg 76492

                                                                         
Query: 287   ggtgatcagccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgat 346
             |||||| ||||| || || |||||||| ||||| ||| | || || |||||||| |||||
Sbjct: 76493 ggtgatgagccgggccccgggcttgtgggcccagggcctgacgaggatgcacgtggcgat 76552

                                                                         
Query: 347   gtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccagccgtagtcgacctc 406
             ||||||||||||||| || ||||||||||| ||||| || ||||| |||||||| |||||
Sbjct: 76553 gtagtccaggttcgtcagtggcacgacgtgggccggtgggccccacccgtagtccacctc 76612

                                                                         
Query: 407   ggcgaacccgagccgcgtccagtccgacaccaacagcgtccggtagtccgacgtgatctg 466
             |||||| || ||||| |||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 76613 ggcgaagcccagccgggtccagtccgacaccagcagcgtccggtagtcggaggtgatctg 76672

                      
Query: 467   atacgggtc 475
              ||||||||
Sbjct: 76673 gtacgggtc 76681
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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score =  248 bits (125), Expect = 1e-62
 Identities = 218/249 (87%)
 Strand = Plus / Plus

                                                                         
Query: 227   tcagttcatgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactg 286
             |||||||| |||||| |  ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 56661 tcagttcaggtcgaggaggccctcgtggaaggcggcgacgcggtcgggggtgacgcactg 56720

                                                                         
Query: 287   ggtgatcagccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgat 346
             |||||| ||||| || || |||||||| ||||| ||| | || || |||||||| |||||
Sbjct: 56721 ggtgatgagccgggccccgggcttgtgggcccagggcctgacgaggatgcacgtggcgat 56780

                                                                         
Query: 347   gtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccagccgtagtcgacctc 406
             ||||||||||||||| || ||||||||||| ||||| || ||||| |||||||| |||||
Sbjct: 56781 gtagtccaggttcgtcagtggcacgacgtgggccggtgggccccacccgtagtccacctc 56840

                                                                         
Query: 407   ggcgaacccgagccgcgtccagtccgacaccaacagcgtccggtagtccgacgtgatctg 466
             |||||| || ||||| |||||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 56841 ggcgaagcccagccgggtccagtccgacaccagcagcgtccggtagtcggaggtgatctg 56900

                      
Query: 467   atacgggtc 475
              ||||||||
Sbjct: 56901 gtacgggtc 56909
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>gb|BT018886.1| Zea mays clone EL01T0205E01.d mRNA sequence
          Length = 1617

 Score =  236 bits (119), Expect = 6e-59
 Identities = 218/251 (86%)
 Strand = Plus / Minus

                                                                        
Query: 235  tgtcgagcattccctcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatca 294
            ||||||||||  |||||||||||| |||||||||||| || || |||||||| ||||| |
Sbjct: 1441 tgtcgagcatggcctcgtggaagggggcgacgcggtccggggtgacgcactgcgtgatga 1382

                                                                        
Query: 295  gccgcgctcctggcttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtcca 354
            ||||||| ||||||||||| ||||| |||||||| || |||||||| |||||||||||||
Sbjct: 1381 gccgcgcccctggcttgtgggcccagggcttcacgaggatgcacgtggcgatgtagtcca 1322

                                                                        
Query: 355  ggttcgtgaggggcacgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacc 414
            |||| || || |||||||||||||| ||||| ||||| |||||||| ||||| ||||| |
Sbjct: 1321 ggtttgtcagcggcacgacgtgcgcgggcgggccccatccgtagtccacctccgcgaagc 1262

                                                                        
Query: 415  cgagccgcgtccagtccgacaccaacagcgtccggtagtccgacgtgatctgatacgggt 474
            ||||  |||||||||| ||||||| |||||| |||||||| ||||||||||| || ||||
Sbjct: 1261 cgaggggcgtccagtcggacaccagcagcgtgcggtagtcggacgtgatctggtaggggt 1202

                       
Query: 475  ccacgtcgccg 485
            | ||| |||||
Sbjct: 1201 cgacgccgccg 1191
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>gb|AY106881.1| Zea mays PCO146606 mRNA sequence
          Length = 535

 Score =  232 bits (117), Expect = 9e-58
 Identities = 192/217 (88%)
 Strand = Plus / Minus

                                                                       
Query: 263 gacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggcttgtgcgcccatgg 322
           |||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||||||
Sbjct: 345 gacgcggtcgggcgtcacgcactgcgtgatgagcctcgcccctggcttgtgggcccatgg 286

                                                                       
Query: 323 cttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtgcgccgg 382
           ||| || || |||||||| ||||||||||||| |||||| || ||||| ||||| || ||
Sbjct: 285 cttgacgaggatgcacgtggcgatgtagtccaagttcgtcagcggcaccacgtgggcggg 226

                                                                       
Query: 383 cggtccccagccgtagtcgacctcggcgaacccgagccgcgtccagtccgacaccaacag 442
           ||| |||||||||||||| ||||| ||||| || |||||||||||||||||||||| |||
Sbjct: 225 cgggccccagccgtagtccacctccgcgaagcccagccgcgtccagtccgacaccagcag 166

                                                
Query: 443 cgtccggtagtccgacgtgatctgatacgggtccacg 479
           |||||||||||| || |||||||| || |||||||||
Sbjct: 165 cgtccggtagtcggaggtgatctggtaggggtccacg 129
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>ref|XM_476061.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1320

 Score =  220 bits (111), Expect = 3e-54
 Identities = 198/227 (87%)
 Strand = Plus / Minus

                                                                        
Query: 249  tcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggc 308
            ||||||||||||| |||||||||||| || |||||||||||||| ||||| || ||||| 
Sbjct: 1298 tcgtggaaggcggtgacgcggtcgggtgtgacgcactgggtgatgagccgtgcccctggt 1239

                                                                        
Query: 309  ttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggc 368
            ||||| ||||| ||||| || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 1238 ttgtgggcccagggcttgacgaggatacacgtggcgatgtagtccaggttcgtgagcggc 1179

                                                                        
Query: 369  acgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccag 428
            ||||||||  |||| || ||||| |||||||| ||||||||||| || ||||||||||||
Sbjct: 1178 acgacgtggcccggtgggccccacccgtagtccacctcggcgaagcccagccgcgtccag 1119

                                                           
Query: 429  tccgacaccaacagcgtccggtagtccgacgtgatctgatacgggtc 475
            || || |||| ||||||||||||||| || |||||||| ||||||||
Sbjct: 1118 tcggagaccagcagcgtccggtagtcggaggtgatctggtacgggtc 1072
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
             complete sequence
          Length = 145070

 Score =  220 bits (111), Expect = 3e-54
 Identities = 198/227 (87%)
 Strand = Plus / Plus

                                                                         
Query: 249   tcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggc 308
             ||||||||||||| |||||||||||| || |||||||||||||| ||||| || ||||| 
Sbjct: 45857 tcgtggaaggcggtgacgcggtcgggtgtgacgcactgggtgatgagccgtgcccctggt 45916

                                                                         
Query: 309   ttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggc 368
             ||||| ||||| ||||| || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 45917 ttgtgggcccagggcttgacgaggatacacgtggcgatgtagtccaggttcgtgagcggc 45976

                                                                         
Query: 369   acgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccag 428
             ||||||||  |||| || ||||| |||||||| ||||||||||| || ||||||||||||
Sbjct: 45977 acgacgtggcccggtgggccccacccgtagtccacctcggcgaagcccagccgcgtccag 46036

                                                            
Query: 429   tccgacaccaacagcgtccggtagtccgacgtgatctgatacgggtc 475
             || || |||| ||||||||||||||| || |||||||| ||||||||
Sbjct: 46037 tcggagaccagcagcgtccggtagtcggaggtgatctggtacgggtc 46083
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  220 bits (111), Expect = 3e-54
 Identities = 198/227 (87%)
 Strand = Plus / Plus

                                                                           
Query: 249     tcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggc 308
               ||||||||||||| |||||||||||| || |||||||||||||| ||||| || ||||| 
Sbjct: 4677852 tcgtggaaggcggtgacgcggtcgggtgtgacgcactgggtgatgagccgtgcccctggt 4677911

                                                                           
Query: 309     ttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggc 368
               ||||| ||||| ||||| || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 4677912 ttgtgggcccagggcttgacgaggatacacgtggcgatgtagtccaggttcgtgagcggc 4677971

                                                                           
Query: 369     acgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccag 428
               ||||||||  |||| || ||||| |||||||| ||||||||||| || ||||||||||||
Sbjct: 4677972 acgacgtggcccggtgggccccacccgtagtccacctcggcgaagcccagccgcgtccag 4678031

                                                              
Query: 429     tccgacaccaacagcgtccggtagtccgacgtgatctgatacgggtc 475
               || || |||| ||||||||||||||| || |||||||| ||||||||
Sbjct: 4678032 tcggagaccagcagcgtccggtagtcggaggtgatctggtacgggtc 4678078



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                           
Query: 366     ggcacgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtc 425
               ||||||||||||| |||||  |||||||| |||||| | ||   ||| ||||||||||||
Sbjct: 2089314 ggcacgacgtgcgacggcgtgccccagccatagtcggcgtctaggaagccgagccgcgtc 2089255

                    
Query: 426     cagtc 430
               |||||
Sbjct: 2089254 cagtc 2089250
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>dbj|AK100028.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147B02, full
            insert sequence
          Length = 1897

 Score =  220 bits (111), Expect = 3e-54
 Identities = 198/227 (87%)
 Strand = Plus / Minus

                                                                        
Query: 249  tcgtggaaggcggcgacgcggtcgggcgtcacgcactgggtgatcagccgcgctcctggc 308
            ||||||||||||| |||||||||||| || |||||||||||||| ||||| || ||||| 
Sbjct: 1385 tcgtggaaggcggtgacgcggtcgggtgtgacgcactgggtgatgagccgtgcccctggt 1326

                                                                        
Query: 309  ttgtgcgcccatggcttcaccagtatgcacgtcgcgatgtagtccaggttcgtgaggggc 368
            ||||| ||||| ||||| || || || ||||| ||||||||||||||||||||||| |||
Sbjct: 1325 ttgtgggcccagggcttgacgaggatacacgtggcgatgtagtccaggttcgtgagcggc 1266

                                                                        
Query: 369  acgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccag 428
            ||||||||  |||| || ||||| |||||||| ||||||||||| || ||||||||||||
Sbjct: 1265 acgacgtggcccggtgggccccacccgtagtccacctcggcgaagcccagccgcgtccag 1206

                                                           
Query: 429  tccgacaccaacagcgtccggtagtccgacgtgatctgatacgggtc 475
            || || |||| ||||||||||||||| || |||||||| ||||||||
Sbjct: 1205 tcggagaccagcagcgtccggtagtcggaggtgatctggtacgggtc 1159
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 9e-21
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                            
Query: 333      atgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccag 392
                ||||| || ||||||||||| ||||| ||||| |||||||||||  | || |  ||||| 
Sbjct: 23056521 atgcaggtggcgatgtagtcgaggttggtgagcggcacgacgtggacgggggcgccccac 23056462

                                                                            
Query: 393      ccgtagtcgacctcggcgaacccgagccgcgtccagtccgacaccaacagcgtccggtag 452
                |||||||| |||||||||||||| ||||||| |||||| || |||| |||||||||||||
Sbjct: 23056461 ccgtagtccacctcggcgaaccccagccgcgaccagtcggagaccagcagcgtccggtag 23056402

                                       
Query: 453      tccgacgtgatctgatacgggtc 475
                || || |||||| | ||||||||
Sbjct: 23056401 tcggaggtgatccggtacgggtc 23056379
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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0652A05
          Length = 150455

 Score =  109 bits (55), Expect = 9e-21
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                          
Query: 333    atgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccag 392
              ||||| || ||||||||||| ||||| ||||| |||||||||||  | || |  ||||| 
Sbjct: 123065 atgcaggtggcgatgtagtcgaggttggtgagcggcacgacgtggacgggggcgccccac 123006

                                                                          
Query: 393    ccgtagtcgacctcggcgaacccgagccgcgtccagtccgacaccaacagcgtccggtag 452
              |||||||| |||||||||||||| ||||||| |||||| || |||| |||||||||||||
Sbjct: 123005 ccgtagtccacctcggcgaaccccagccgcgaccagtcggagaccagcagcgtccggtag 122946

                                     
Query: 453    tccgacgtgatctgatacgggtc 475
              || || |||||| | ||||||||
Sbjct: 122945 tcggaggtgatccggtacgggtc 122923
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>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0417D05
          Length = 165752

 Score =  109 bits (55), Expect = 9e-21
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                        
Query: 333  atgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccag 392
            ||||| || ||||||||||| ||||| ||||| |||||||||||  | || |  ||||| 
Sbjct: 7169 atgcaggtggcgatgtagtcgaggttggtgagcggcacgacgtggacgggggcgccccac 7110

                                                                        
Query: 393  ccgtagtcgacctcggcgaacccgagccgcgtccagtccgacaccaacagcgtccggtag 452
            |||||||| |||||||||||||| ||||||| |||||| || |||| |||||||||||||
Sbjct: 7109 ccgtagtccacctcggcgaaccccagccgcgaccagtcggagaccagcagcgtccggtag 7050

                                   
Query: 453  tccgacgtgatctgatacgggtc 475
            || || |||||| | ||||||||
Sbjct: 7049 tcggaggtgatccggtacgggtc 7027
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>dbj|AK120657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E04, full
            insert sequence
          Length = 1507

 Score =  109 bits (55), Expect = 9e-21
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                        
Query: 333  atgcacgtcgcgatgtagtccaggttcgtgaggggcacgacgtgcgccggcggtccccag 392
            ||||| || ||||||||||| ||||| ||||| |||||||||||  | || |  ||||| 
Sbjct: 1135 atgcaggtggcgatgtagtcgaggttggtgagcggcacgacgtggacgggggcgccccac 1076

                                                                        
Query: 393  ccgtagtcgacctcggcgaacccgagccgcgtccagtccgacaccaacagcgtccggtag 452
            |||||||| |||||||||||||| ||||||| |||||| || |||| |||||||||||||
Sbjct: 1075 ccgtagtccacctcggcgaaccccagccgcgaccagtcggagaccagcagcgtccggtag 1016

                                   
Query: 453  tccgacgtgatctgatacgggtc 475
            || || |||||| | ||||||||
Sbjct: 1015 tcggaggtgatccggtacgggtc 993
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>ref|NM_189610.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1581

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 391  agccgtagtcgacctcggcgaacccgagc 419
            |||||||||| ||||||||||||||||||
Sbjct: 1163 agccgtagtccacctcggcgaacccgagc 1135
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>ref|XM_475572.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1311

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 366  ggcacgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtc 425
            ||||||||||||| |||||  |||||||| |||||| | ||   ||| ||||||||||||
Sbjct: 1163 ggcacgacgtgcgacggcgtgccccagccatagtcggcgtctaggaagccgagccgcgtc 1104

                 
Query: 426  cagtc 430
            |||||
Sbjct: 1103 cagtc 1099
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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F03
          Length = 149699

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 391   agccgtagtcgacctcggcgaacccgagc 419
             |||||||||| ||||||||||||||||||
Sbjct: 66123 agccgtagtccacctcggcgaacccgagc 66095
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>dbj|AK110554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C05, full
           insert sequence
          Length = 1033

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 391 agccgtagtcgacctcggcgaacccgagc 419
           |||||||||| ||||||||||||||||||
Sbjct: 219 agccgtagtccacctcggcgaacccgagc 247
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>dbj|AK104360.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C03, full
           insert sequence
          Length = 1097

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 391 agccgtagtcgacctcggcgaacccgagc 419
           |||||||||| ||||||||||||||||||
Sbjct: 674 agccgtagtccacctcggcgaacccgagc 646
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>dbj|AK098922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O23, full
            insert sequence
          Length = 1581

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 391  agccgtagtcgacctcggcgaacccgagc 419
            |||||||||| ||||||||||||||||||
Sbjct: 1163 agccgtagtccacctcggcgaacccgagc 1135
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>dbj|AK069868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039O14, full
            insert sequence
          Length = 1730

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 366  ggcacgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtc 425
            ||||||||||||| |||||  |||||||| |||||| | ||   ||| ||||||||||||
Sbjct: 1263 ggcacgacgtgcgacggcgtgccccagccatagtcggcgtctaggaagccgagccgcgtc 1204

                 
Query: 426  cagtc 430
            |||||
Sbjct: 1203 cagtc 1199
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>dbj|AK065320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P13, full
            insert sequence
          Length = 2131

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 391  agccgtagtcgacctcggcgaacccgagc 419
            |||||||||| ||||||||||||||||||
Sbjct: 1705 agccgtagtccacctcggcgaacccgagc 1677
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>dbj|AK065131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P14, full
            insert sequence
          Length = 1593

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 391  agccgtagtcgacctcggcgaacccgagc 419
            |||||||||| ||||||||||||||||||
Sbjct: 1167 agccgtagtccacctcggcgaacccgagc 1139
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>dbj|AK061343.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E05, full
           insert sequence
          Length = 1097

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 391 agccgtagtcgacctcggcgaacccgagc 419
           |||||||||| ||||||||||||||||||
Sbjct: 674 agccgtagtccacctcggcgaacccgagc 646
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>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 366   ggcacgacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtc 425
             ||||||||||||| |||||  |||||||| |||||| | ||   ||| ||||||||||||
Sbjct: 56155 ggcacgacgtgcgacggcgtgccccagccatagtcggcgtctaggaagccgagccgcgtc 56096

                  
Query: 426   cagtc 430
             |||||
Sbjct: 56095 cagtc 56091
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>ref|NM_183606.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 462

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 371 gacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccagtc 430
           |||||||| |||||| ||||| ||||||||  ||||   |||||| ||||||||||||||
Sbjct: 315 gacgtgcgacggcggcccccacccgtagtccgcctccaggaaccccagccgcgtccagtc 256
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>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0706B05
          Length = 187835

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 371   gacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccagtc 430
             |||||||| |||||| ||||| ||||||||  ||||   |||||| ||||||||||||||
Sbjct: 54407 gacgtgcgacggcggcccccacccgtagtccgcctccaggaaccccagccgcgtccagtc 54466
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>dbj|AK070443.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054D03, full
            insert sequence
          Length = 1655

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 371  gacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccagtc 430
            |||||||| |||||| ||||| ||||||||  ||||   |||||| ||||||||||||||
Sbjct: 1280 gacgtgcgacggcggcccccacccgtagtccgcctccaggaaccccagccgcgtccagtc 1221
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>dbj|AK060689.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A09, full
            insert sequence
          Length = 1553

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 371  gacgtgcgccggcggtccccagccgtagtcgacctcggcgaacccgagccgcgtccagtc 430
            |||||||| |||||| ||||| ||||||||  ||||   |||||| ||||||||||||||
Sbjct: 1175 gacgtgcgacggcggcccccacccgtagtccgcctccaggaaccccagccgcgtccagtc 1116
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 400    cgacctcggcgaacccgagccgc 422
              |||||||||||||||||||||||
Sbjct: 776429 cgacctcggcgaacccgagccgc 776451
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 364    ggggcacgacgtgcgccggcg 384
              |||||||||||||||||||||
Sbjct: 319210 ggggcacgacgtgcgccggcg 319230
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>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 391    agccgtagtcgacctcggcgaacccgagc 419
              |||||||||||||||||| ||| ||||||
Sbjct: 109705 agccgtagtcgacctcggagaagccgagc 109733
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 364     ggggcacgacgtgcgccggcg 384
               |||||||||||||||||||||
Sbjct: 1645057 ggggcacgacgtgcgccggcg 1645077
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>gb|DQ227316.1| Synthetic construct VAR2CSA mRNA, partial cds
          Length = 8000

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 244  ttccctcgtggaaggcggcga 264
            |||||||||||||||||||||
Sbjct: 1873 ttccctcgtggaaggcggcga 1853
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>emb|X64701.1|HMGVPG H.mediterranei genes gvpA, gvpC to gvpO
          Length = 12690

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 232  tcatgtcgagcattccctcgt 252
            |||||||||||||||||||||
Sbjct: 6358 tcatgtcgagcattccctcgt 6338
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>gb|AY110165.1| Zea mays CL20454_1 mRNA sequence
          Length = 1000

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 391 agccgtagtcgacctcggcgaacccgagc 419
           |||||||||||||||||| ||| ||||||
Sbjct: 572 agccgtagtcgacctcggagaagccgagc 544
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 253    ggaaggcggcgacgcggtcgggcg 276
              |||||||||| |||||||||||||
Sbjct: 680792 ggaaggcggcaacgcggtcgggcg 680815
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>gb|AC125010.6| Mus musculus chromosome 10, clone RP24-117L12, complete sequence
          Length = 223541

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gtggctttccaccaaaccca 65
              ||||||||||||||||||||
Sbjct: 117505 gtggctttccaccaaaccca 117486
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>ref|XM_842720.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0790)
            partial mRNA
          Length = 3702

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 253  ggaaggcggcgacgcggtcgggcg 276
            |||||||||| |||||||||||||
Sbjct: 2149 ggaaggcggcaacgcggtcgggcg 2126
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>emb|AL713917.6| Mouse DNA sequence from clone RP23-352L3 on chromosome 11 Contains the
             5' end of the gene for the ortholog of human yippee-like 2
             (Drosophila) YPEL2, four novel genes and the 5' end of the
             Trim37 gene for tripartite motif protein 37, complete
             sequence
          Length = 168363

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    acaatcaactccccaaattc 86
             ||||||||||||||||||||
Sbjct: 96730 acaatcaactccccaaattc 96749
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>gb|AE011727.1| Xanthomonas axonopodis pv. citri str. 306,  section 105 of 469 of the
            complete genome
          Length = 9150

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 249  tcgtggaaggcggcgacgcggtcg 272
            |||||||||||||||||| |||||
Sbjct: 2579 tcgtggaaggcggcgacgtggtcg 2602
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 248    ctcgtggaaggcggcgacgcggtc 271
              ||||||||||||||| ||||||||
Sbjct: 788056 ctcgtggaaggcggccacgcggtc 788079
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>gb|AC160964.1| Mus musculus BAC clone RP24-316G24 from chromosome 9, complete sequence
          Length = 158842

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     atacaatcaactccccaaat 84
              ||||||||||||||||||||
Sbjct: 107024 atacaatcaactccccaaat 107005
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>dbj|AB185544.1| Uncultured rumen bacterium gene for 16S rRNA, partial sequence,
           clone: F23-E02
          Length = 1514

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 aaggcggcgacgcggtcggg 274
           ||||||||||||||||||||
Sbjct: 198 aaggcggcgacgcggtcggg 217
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>dbj|AB084949.2| Mus musculus Stx-7 gene for syntaxin-7, complete cds
          Length = 35661

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gtggctttccaccaaaccca 65
             ||||||||||||||||||||
Sbjct: 34600 gtggctttccaccaaaccca 34619
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>gb|AF545580.1|AF545580S1 Micromonospora megalomicea subsp. nigra UnbL (unbL), PksE (pksE), and
            TebC (tebC) genes, complete cds
          Length = 7297

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 394  cgtagtcgacctcggcgaacccga 417
            |||||||||||||| |||||||||
Sbjct: 4550 cgtagtcgacctcgacgaacccga 4527
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 248     ctcgtggaaggcggcgacgcggtcgggc 275
               ||||||||||||| |||||||| |||||
Sbjct: 2145677 ctcgtggaaggcgacgacgcggacgggc 2145704
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>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     accaacccaatgcaaaccat 165
               ||||||||||||||||||||
Sbjct: 4216426 accaacccaatgcaaaccat 4216407
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>emb|AL591373.8| Mouse DNA sequence from clone RP23-268M6 on chromosome 18, complete
             sequence
          Length = 174264

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    ggaccagttgcttattttca 107
             ||||||||||||||||||||
Sbjct: 40221 ggaccagttgcttattttca 40202
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>gb|AC090534.10| Mus musculus Strain C57BL6/J chromosome 18 BAC, RP23-233F17, complete
              sequence
          Length = 176773

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     ggaccagttgcttattttca 107
              ||||||||||||||||||||
Sbjct: 162840 ggaccagttgcttattttca 162821


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,468,975
Number of Sequences: 3902068
Number of extensions: 3468975
Number of successful extensions: 69906
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69289
Number of HSP's gapped (non-prelim): 609
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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