ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TX60A_PHYSE (P58911) Toxin PsTX-60A precursor 28 4.8
2COLL2_MIMIV (Q5UQ13) Collagen-like protein 2 28 8.3

>TX60A_PHYSE (P58911) Toxin PsTX-60A precursor|
          Length = 501

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 201 CYPSRRASSSFGYCRVVGLSLWFTVPS 121
           CYP++ +  ++  CR+ GL+ W + P+
Sbjct: 439 CYPNKESGFAWHGCRLHGLTCWCSAPN 465



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>COLL2_MIMIV (Q5UQ13) Collagen-like protein 2|
          Length = 1595

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 32 RYYDDIYKQRLRYAVPGTP 88
          R+YD +  QR  Y++PG P
Sbjct: 26 RFYDQLISQRYAYSIPGIP 44


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,250,833
Number of Sequences: 219361
Number of extensions: 562920
Number of successful extensions: 1243
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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