| Clone Name | rbaet40g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRNA, complete cds Length = 2397 Score = 214 bits (108), Expect = 9e-53 Identities = 180/199 (90%), Gaps = 5/199 (2%) Strand = Plus / Minus Query: 44 gatatatataagcaacgattacgatacgcagttccgggcactccataaaccagcatcccc 103 |||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||| Sbjct: 2385 gatatatataagcaacgattacgatacgcagttccggggactccacagacca--ctcccc 2328 Query: 104 tagccccatcagtccaggctaggcacagtaaacca-caaagacaaaccgaccacgcgaca 162 ||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2327 tagccccattacagcaggctaggcacagtaaaccataaaagacaaaccgaccacgcgaca 2268 Query: 163 gtaa-ccaaaagatgagctagctctacgacttggatagc-agcaaatgcacacgcctagt 220 |||| ||||||||| |||||||||||||||| ||||||| ||| || ||||||||||||| Sbjct: 2267 gtaacccaaaagataagctagctctacgactcggatagcaagcgaacgcacacgcctagt 2208 Query: 221 cgacctcctccattttgct 239 ||||||||||||| ||||| Sbjct: 2207 cgacctcctccatcttgct 2189
>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence Length = 209365 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 acagtaaaccacaaagacaaa 148 ||||||||||||||||||||| Sbjct: 127015 acagtaaaccacaaagacaaa 127035
>gb|BT018733.1| Zea mays clone EL01N0520C02.d mRNA sequence Length = 2179 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 ctagtcgacctcctccattttgct 239 |||||||||||||||||| ||||| Sbjct: 2034 ctagtcgacctcctccatcttgct 2011
>gb|AC166164.2| Mus musculus BAC clone RP23-394K2 from chromosome 17, complete sequence Length = 197143 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 agatgagctagctctacgac 191 |||||||||||||||||||| Sbjct: 21031 agatgagctagctctacgac 21012
>dbj|AK110745.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F12, full insert sequence Length = 2441 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 acacgcctagtcgacctcctccat 233 |||||| ||||||||||||||||| Sbjct: 2240 acacgcttagtcgacctcctccat 2217
>gb|AY109427.1| Zea mays CL1264_2 mRNA sequence Length = 1267 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 ctagtcgacctcctccattttgct 239 |||||||||||||||||| ||||| Sbjct: 1017 ctagtcgacctcctccatcttgct 994
>gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome 17, complete sequence Length = 206353 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 agatgagctagctctacgac 191 |||||||||||||||||||| Sbjct: 29948 agatgagctagctctacgac 29967 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,737,406 Number of Sequences: 3902068 Number of extensions: 1737406 Number of successful extensions: 30213 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30199 Number of HSP's gapped (non-prelim): 10 length of query: 239 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 217 effective length of database: 17,147,199,772 effective search space: 3720942350524 effective search space used: 3720942350524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)