ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet40g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRN... 214 9e-53
2gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, comp... 42 0.78
3gb|BT018733.1| Zea mays clone EL01N0520C02.d mRNA sequence 40 3.1
4gb|AC166164.2| Mus musculus BAC clone RP23-394K2 from chromosome... 40 3.1
5dbj|AK110745.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.1
6gb|AY109427.1| Zea mays CL1264_2 mRNA sequence 40 3.1
7gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome... 40 3.1

>gb|U55859.1|TAU55859 Triticum aestivum heat shock protein 80 mRNA, complete cds
          Length = 2397

 Score =  214 bits (108), Expect = 9e-53
 Identities = 180/199 (90%), Gaps = 5/199 (2%)
 Strand = Plus / Minus

                                                                        
Query: 44   gatatatataagcaacgattacgatacgcagttccgggcactccataaaccagcatcccc 103
            |||||||||||||||||||||||||||||||||||||| |||||| | ||||   |||||
Sbjct: 2385 gatatatataagcaacgattacgatacgcagttccggggactccacagacca--ctcccc 2328

                                                                        
Query: 104  tagccccatcagtccaggctaggcacagtaaacca-caaagacaaaccgaccacgcgaca 162
            ||||||||| |   |||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 2327 tagccccattacagcaggctaggcacagtaaaccataaaagacaaaccgaccacgcgaca 2268

                                                                        
Query: 163  gtaa-ccaaaagatgagctagctctacgacttggatagc-agcaaatgcacacgcctagt 220
            |||| ||||||||| |||||||||||||||| ||||||| ||| || |||||||||||||
Sbjct: 2267 gtaacccaaaagataagctagctctacgactcggatagcaagcgaacgcacacgcctagt 2208

                               
Query: 221  cgacctcctccattttgct 239
            ||||||||||||| |||||
Sbjct: 2207 cgacctcctccatcttgct 2189



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>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence
          Length = 209365

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 128    acagtaaaccacaaagacaaa 148
              |||||||||||||||||||||
Sbjct: 127015 acagtaaaccacaaagacaaa 127035



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>gb|BT018733.1| Zea mays clone EL01N0520C02.d mRNA sequence
          Length = 2179

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  ctagtcgacctcctccattttgct 239
            |||||||||||||||||| |||||
Sbjct: 2034 ctagtcgacctcctccatcttgct 2011



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>gb|AC166164.2| Mus musculus BAC clone RP23-394K2 from chromosome 17, complete sequence
          Length = 197143

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   agatgagctagctctacgac 191
             ||||||||||||||||||||
Sbjct: 21031 agatgagctagctctacgac 21012



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>dbj|AK110745.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F12, full
            insert sequence
          Length = 2441

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 210  acacgcctagtcgacctcctccat 233
            |||||| |||||||||||||||||
Sbjct: 2240 acacgcttagtcgacctcctccat 2217



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>gb|AY109427.1| Zea mays CL1264_2 mRNA sequence
          Length = 1267

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  ctagtcgacctcctccattttgct 239
            |||||||||||||||||| |||||
Sbjct: 1017 ctagtcgacctcctccatcttgct 994



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>gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome 17, complete sequence
          Length = 206353

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   agatgagctagctctacgac 191
             ||||||||||||||||||||
Sbjct: 29948 agatgagctagctctacgac 29967


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,737,406
Number of Sequences: 3902068
Number of extensions: 1737406
Number of successful extensions: 30213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30199
Number of HSP's gapped (non-prelim): 10
length of query: 239
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 217
effective length of database: 17,147,199,772
effective search space: 3720942350524
effective search space used: 3720942350524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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